View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_6 (Length: 398)
Name: NF9269_low_6
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 39059220 - 39059590
Alignment:
| Q |
18 |
ctacctgctcagaaagtacaggagctataactcaaaccaatggcattttttgaccatttatattcttaataaattttttgacgctattccacatttggat |
117 |
Q |
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| T |
39059220 |
ctacctgcttagaaagtacaggagccataactcaaaccaatggcattttttgaccatttatattcttaataaattttttgacgctattccacatttggat |
39059319 |
T |
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| Q |
118 |
tgttcttggcaacatcaacgattacacgtttgtaagcttgaggaaaggtggaagaaagtattgtgtgtagaactaactgattagcctcaacacggtttag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39059320 |
tgttcttggcaacatcaacgattacacgtttgtaagcttgaggaaaggtggaagaaagtattgtgtgtagaactaaccgattagcctcaacacggtttag |
39059419 |
T |
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| Q |
218 |
atgaatcttgcaagttttgtgaatcatgtgacacggtgtatattcatttatatatagttnnnnnnnggtgtatagttgtgtgtattcttttacattatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
39059420 |
atgaatcttgcaagttttgtgaatcatgtgacacagtgtatattcatttatatatagttaaaaaaaggtgtatatttgtgtgtattcttttacattatcc |
39059519 |
T |
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| Q |
318 |
caatggatgatgatagtggagacgtggttcctcactctgtctctattgaagaacatgtgcagatgtctgtg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39059520 |
caatggatgatgatagtggagacgtggttcctcactctgtctctattgaaggacatgtgcagatgtctgtg |
39059590 |
T |
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