View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9269_low_9 (Length: 378)
Name: NF9269_low_9
Description: NF9269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9269_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 37259559 - 37259913
Alignment:
| Q |
7 |
ggagaagcagagaacaagtcaaattggattaattagtggaatcaattactattatggattataccttttttggtgcattcaaattaaagaaagaaatcat |
106 |
Q |
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| T |
37259559 |
ggagaagtagagaacaagtaaaattggattaattagtggaatcaattactattatggattatacctcttttggtgcattcaaattaaagaaagaaatcat |
37259658 |
T |
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| Q |
107 |
atcgtaaaaataataataataagatatatgagccgtcccacgtaaataaaatatgaaaggccttgtgtgtg-----ttaataaagggtttgacgacaata |
201 |
Q |
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| T |
37259659 |
atcgtaaaaataataataataagatat--gagccgtcccacgtaaataaaatatgaaaggccttgtgtgtgttgtgttaataaagggtttgacgacaata |
37259756 |
T |
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| Q |
202 |
taaaatttcaattgcattccagaatagtgtaccaaaaaacataaatcatctttaactttggattacgttcggattctgaatagatatatatttttgtatt |
301 |
Q |
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| T |
37259757 |
taaaatttcaattgcattccagaatagtgtaccaaaaaacataaatcatctttaactttggattacgttcggattctgaatagatatatatttttgtatt |
37259856 |
T |
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| Q |
302 |
ttatatggaacgttattccgttgtcgtgtagaaaaggataaattgatcacgtgagtga |
359 |
Q |
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| T |
37259857 |
ttatatggaacgttattccgttgtcgtgtag-aaaggataaattgatcacgtgagtga |
37259913 |
T |
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