View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9270_low_1 (Length: 543)
Name: NF9270_low_1
Description: NF9270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9270_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 135 - 527
Target Start/End: Complemental strand, 207285 - 206893
Alignment:
| Q |
135 |
acattcctcatcattcatgctccaaacgacaccattaacccactaatatatattgtgtacggtttggtacatcttggaagttagatatatacaaaatgaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
207285 |
acattcctcatcattcatgctccaaacgacaccattaacccactaatatatattgtgtacggtttggtacatcttggaagttagatatatacaaaatgaa |
207186 |
T |
|
| Q |
235 |
gctgcagggtattactcttaatattatcaatgcccnnnnnnngatgatattttcctttctcttgctctcacactccatacaagttgaggggacaagacct |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
207185 |
gctgcagggtattactcttaatattatcaatgccctttttttgatgatattttcctttctcttgctctcgcactccatacaagttgaggggacaagacct |
207086 |
T |
|
| Q |
335 |
ctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactgaactgatgctgcat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
207085 |
ctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactgaactgatgctgcat |
206986 |
T |
|
| Q |
435 |
gtacgccaaagaaacttaactaattttatatgtactttcttgtctatagacgtaggagtttatttacttttagggagttggaaagggaatact |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
206985 |
gtacgccaaagaaacttaactaattttatatgttctttcttgtctatagacgtaggagtttatttacttttagggagttggaaagggaatact |
206893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 207415 - 207312
Alignment:
| Q |
17 |
aataaccttccaaccccgccaccagctacaagttaagtcaataaagaacaaaacaagcctttttccaattaatcttcaattcagtcattctccatacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
207415 |
aataaccttccaaccccgccaccagctacaagttaagtcaataaagaacaaaacaagcctttttccaattaatcttcaattcagtcattctccatacaca |
207316 |
T |
|
| Q |
117 |
ttgc |
120 |
Q |
| |
|
|||| |
|
|
| T |
207315 |
ttgc |
207312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 48517863 - 48517955
Alignment:
| Q |
329 |
agacctctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactga |
421 |
Q |
| |
|
|||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||| |
|
|
| T |
48517863 |
agacctctgaaagatcaatctcctccatcattcttaagtttaataatcaaccaggcttattctggaccaagtcgcagaggacgcggtcactga |
48517955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University