View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9270_low_2 (Length: 453)
Name: NF9270_low_2
Description: NF9270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9270_low_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 28830369 - 28829934
Alignment:
| Q |
18 |
caacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaagagccataggaccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28830369 |
caacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaagagccataggaccc |
28830270 |
T |
|
| Q |
118 |
tcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctccaccttcatattcatcaccctagtcttaatcacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28830269 |
tcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctccaccttcatattcatcaccctagtcttaatcacat |
28830170 |
T |
|
| Q |
218 |
ccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacgtgggtcccaagcccatccttcatccaaccatttttcaaaatctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28830169 |
ccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacatgggtcccaagcccatccttcatccaaccatttttcaaaatctt |
28830070 |
T |
|
| Q |
318 |
ttccttaaactcatcataggatgccagctgtgacgcggtaaccaacatggcacggttcactgttagagatgaaccgcgccataggctagtaactccctcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28830069 |
ttccttaaactcatcataggatgccagctgtgatgcggtaaccaacatggcgcggttcactgtcagagatgaaccgcgccataggctagtaactccctcg |
28829970 |
T |
|
| Q |
418 |
tctttcgccatcctggagatggcgttgaccacagat |
453 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
28829969 |
tctttcgccatcctggagatggcgtcgacgacagat |
28829934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 13919128 - 13918855
Alignment:
| Q |
17 |
acaacttacgaacctgttccaatgtaacaaacaacacaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaagagccataggacc |
116 |
Q |
| |
|
||||||| ||||| || ||||| |||||||||| ||||| || || ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13919128 |
acaacttgcgaacttgctccaaagtaacaaacagaacaacagtgaaaggtccctgccttgaaattgtaggaataaatcccttgtaaagagccataggacc |
13919029 |
T |
|
| Q |
117 |
ctcagcacgaatagtcttcaaagcacaatcaatggcaccggagtaaggtggaggcgatccagcctccaccttcatattcatcaccctagtcttaatcaca |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||| | || ||||| | |||||||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
13919028 |
ctcagcacgaactgtcttcaaagcacaatccaaagcaccagcatagggtggttcctttccagcctccaccttcatgttcatcacccttgtcttaataaca |
13918929 |
T |
|
| Q |
217 |
tccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacgtgggtcccaagcccatc |
290 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || || | |||||| ||| ||| ||||||||||| ||||| |
|
|
| T |
13918928 |
tccactggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacatgggtcccaaggccatc |
13918855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 52 - 299
Target Start/End: Complemental strand, 46255184 - 46254934
Alignment:
| Q |
52 |
acaacggtaaacggtccctgccttgtaattgtaggaataaaacccttataaagagccataggaccctcagcacgaatagtcttcaaagcacaatcaatgg |
151 |
Q |
| |
|
||||| ||||| || ||||| |||| |||||||||||||||||||||||||||||||||| || |||||||| | |||||| | ||||||||||| | |
|
|
| T |
46255184 |
acaacagtaaaaggaccctgtcttgaaattgtaggaataaaacccttataaagagccataaccccttcagcacgtacagtcttaacagcacaatcaagtg |
46255085 |
T |
|
| Q |
152 |
caccggagtaaggtggaggcgatccagcct---ccaccttcatattcatcaccctagtcttaatcacatccactggattcgatgcaaccgcggccacaaa |
248 |
Q |
| |
|
|||| || |||| | | ||| | ||||||||||| |||| ||||||||||| |||||||| | ||||||||| |||||||| |||| ||| |
|
|
| T |
46255084 |
cacctttatacggtgcaccctccccaccagatcccaccttcatactcataaccctagtctttatcacatcaattggattcgacgcaaccgccgccaaaaa |
46254985 |
T |
|
| Q |
249 |
acctgccgaaaaactcgctaccacgtgggtcccaagcccatccttcatcca |
299 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
46254984 |
acccgccgcaaaactcgctaccacgtgggtcccaaacccatctttcatcca |
46254934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University