View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9270_low_3 (Length: 301)

Name: NF9270_low_3
Description: NF9270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9270_low_3
NF9270_low_3
[»] chr4 (12 HSPs)
chr4 (17-289)||(11545135-11545420)
chr4 (17-164)||(11449409-11449570)
chr4 (21-250)||(11419639-11419881)
chr4 (21-97)||(19053141-19053217)
chr4 (210-274)||(11449332-11449396)
chr4 (21-108)||(47575625-47575712)
chr4 (110-275)||(21809890-21810054)
chr4 (21-101)||(14475226-14475306)
chr4 (23-97)||(17474203-17474277)
chr4 (17-84)||(19555426-19555493)
chr4 (28-90)||(8911581-8911642)
chr4 (23-61)||(18445865-18445903)
[»] chr3 (13 HSPs)
chr3 (23-283)||(13291588-13291862)
chr3 (21-190)||(10928886-10929069)
chr3 (23-236)||(14427170-14427396)
chr3 (23-272)||(4514608-4514870)
chr3 (103-250)||(17119043-17119189)
chr3 (102-258)||(17637420-17637582)
chr3 (23-85)||(19307045-19307107)
chr3 (27-86)||(38076434-38076493)
chr3 (119-211)||(38076297-38076388)
chr3 (110-155)||(4767763-4767808)
chr3 (197-289)||(23955094-23955186)
chr3 (23-56)||(19905677-19905710)
chr3 (24-84)||(27486068-27486128)
[»] chr7 (12 HSPs)
chr7 (26-289)||(10646671-10646947)
chr7 (21-283)||(1782933-1783209)
chr7 (23-250)||(32957526-32957765)
chr7 (23-182)||(17891356-17891528)
chr7 (23-250)||(27707255-27707494)
chr7 (21-107)||(1777160-1777246)
chr7 (139-275)||(8105711-8105846)
chr7 (21-83)||(22975207-22975269)
chr7 (109-206)||(26822351-26822447)
chr7 (23-108)||(5265184-5265271)
chr7 (182-281)||(5265356-5265454)
chr7 (112-250)||(12733626-12733764)
[»] chr1 (17 HSPs)
chr1 (23-278)||(30805745-30806014)
chr1 (23-248)||(33438858-33439099)
chr1 (23-108)||(12397744-12397829)
chr1 (100-289)||(17316291-17316479)
chr1 (22-160)||(19003152-19003304)
chr1 (23-278)||(26897986-26898255)
chr1 (21-84)||(15787882-15787945)
chr1 (23-250)||(22666194-22666436)
chr1 (23-84)||(12669208-12669269)
chr1 (21-108)||(18932782-18932869)
chr1 (23-84)||(19019240-19019301)
chr1 (23-108)||(17496732-17496817)
chr1 (108-160)||(17103349-17103401)
chr1 (133-197)||(21721122-21721186)
chr1 (101-155)||(12669123-12669177)
chr1 (120-180)||(15787772-15787832)
chr1 (23-55)||(17316523-17316555)
[»] chr8 (11 HSPs)
chr8 (23-250)||(28890222-28890462)
chr8 (23-208)||(23520950-23521148)
chr8 (24-271)||(24277099-24277358)
chr8 (105-210)||(25724637-25724742)
chr8 (21-250)||(23584847-23585089)
chr8 (23-62)||(26576541-26576580)
chr8 (26-108)||(25727581-25727663)
chr8 (66-108)||(24502722-24502764)
chr8 (110-262)||(24502554-24502706)
chr8 (28-84)||(13645209-13645264)
chr8 (28-84)||(13745634-13745689)
[»] chr2 (15 HSPs)
chr2 (23-274)||(16917316-16917581)
chr2 (23-289)||(19877953-19878232)
chr2 (119-278)||(28449378-28449537)
chr2 (31-237)||(16587042-16587261)
chr2 (24-108)||(21748602-21748686)
chr2 (24-181)||(27765606-27765777)
chr2 (21-82)||(21548407-21548468)
chr2 (24-108)||(35666154-35666237)
chr2 (26-84)||(25916710-25916768)
chr2 (23-84)||(45621996-45622057)
chr2 (109-208)||(35666041-35666139)
chr2 (23-84)||(29409549-29409609)
chr2 (75-108)||(42256264-42256297)
chr2 (191-243)||(16495698-16495750)
chr2 (105-197)||(42256308-42256400)
[»] chr5 (10 HSPs)
chr5 (109-260)||(26013753-26013903)
chr5 (109-250)||(22826169-22826309)
chr5 (111-231)||(27499836-27499955)
chr5 (110-161)||(37336664-37336715)
chr5 (17-108)||(30608346-30608437)
chr5 (108-206)||(26335539-26335636)
chr5 (23-84)||(24492544-24492605)
chr5 (21-84)||(6999033-6999096)
chr5 (24-62)||(26013654-26013692)
chr5 (23-68)||(24838492-24838537)
[»] chr6 (10 HSPs)
chr6 (110-249)||(22562679-22562817)
chr6 (24-283)||(10814685-10814957)
chr6 (23-160)||(4097788-4097939)
chr6 (108-250)||(4312406-4312547)
chr6 (23-106)||(11704061-11704144)
chr6 (21-84)||(18615342-18615405)
chr6 (23-108)||(10821058-10821143)
chr6 (108-160)||(11703993-11704045)
chr6 (27-58)||(14271766-14271797)
chr6 (23-84)||(19490871-19490932)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-84)||(27813-27873)
[»] scaffold0088 (1 HSPs)
scaffold0088 (103-161)||(42184-42242)
[»] scaffold0650 (1 HSPs)
scaffold0650 (110-210)||(5922-6021)
[»] scaffold0514 (1 HSPs)
scaffold0514 (133-190)||(7285-7342)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 11545135 - 11545420
Alignment:
Q  17 tcatcacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------- 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||||||||||||||| | ||||||||||            
T  11545135 tcatcacattaagagtcgttgagaagcttcaaatca-ggatgttaggccattacctaatatggataatgtcattgattaaaaatttgaaattcctttgtt 11545233  T
Q  109 ------ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgata 202  Q
          ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  11545234 gaaactggaattatccgtttattctctttgtccttgaagttttttgtttgtttctacacatggtcagaagaagacaaattgtattatcagagtcttgata 11545333  T
Q  203 gagacaacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 289  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11545334 gagacaacaacataagaggataaatctgatgtgaattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 11545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 11449570 - 11449409
Alignment:
Q  17 tcatcacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------- 107  Q
    ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||             
T  11449570 tcatcacattaagagtaattgagaagcttcaaatcaaggatgtttggccattgcctaatatggataatgtcattgattagacatttgaaattcctttgtt 11449471  T
Q  108 -----tggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatg 164  Q
         |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11449470 gaaactggaattatccgttcattttctttgtccttgaagttttttgtttgtttctacacatg 11449409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 11419639 - 11419881
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt------------ 108  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||||||  ||||||||||||||||||||||                
T  11419639 cacattatgagtcgttgtgaagcttcaaatcaagaatgttgggtctttgtctaatttggataattccattgattagacatttgaaattcctctattgaaa 11419738  T
Q  109 --ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
      | ||||||  ||||||||||||| ||||||||||| ||||||||||||||||| || ||| || |||| ||| |||||||||||| | |||||||| |    
T  11419739 ttgtaattatatgttcattctctttgtccttgaagttctttgtttgtttctacacgtggtcagaagaagaaaaactgtattatcagact-ttgatagaaa 11419837  T
Q  207 caacaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    |||| ||| ||||||| ||||||||  |||| ||||||||||||    
T  11419838 caactacagaagaggacaaatctgacatggagtctgggtccctc 11419881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 19053141 - 19053217
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattaga 97  Q
    |||||||||||||||| ||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||    
T  19053141 cacattaagagtcgttaagaagcttcaaatcaagggcgttgggccattgcctgatatggataatgtcattgattaga 19053217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 11449396 - 11449332
Alignment:
Q  210 caacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtct 274  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  11449396 caacataagaggataaatctgatgtggattttgggtccctctggatcttctattctttagagtct 11449332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 47575625 - 47575712
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||| |||||||||   ||||||||||||| |||||| |||| |||||||||||||||||  ||||||||||||||||||||    
T  47575625 cacattaagattcgttgagataattcaaatcaaggacgttgggccattccctaatatggataatgttgttgattagacatttgaaatt 47575712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 275
Target Start/End: Complemental strand, 21810054 - 21809890
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| || || ||| |||||| |||||| ||||||| | |||||  ||||||    
T  21810054 gaattatctgttcattctctttgtccttgaagttatttgtttgtttttacacgtgatctaaataagacagattgtactatcagact-ttgattaagacaa 21809956  T
Q  210 caacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctg 275  Q
    | ||| ||||||| |||||| | ||||  ||||| ||||||  | |||| | | ||||||||||||    
T  21809955 ctacagaagaggacaaatcttacgtggtgtctggatccctcaagatcttatgtacttcagagtctg 21809890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 14475226 - 14475306
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatt 101  Q
    |||||||||||||||||| |||||| |||||||  |  |||| || |||||| |||||||||||||| |||||||||||||    
T  14475226 cacattaagagtcgttgaaaagctttaaatcaaaaacattggatctttgcctgatatggataatgtcgttgattagacatt 14475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 17474277 - 17474203
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattaga 97  Q
    |||||||| | ||||| ||||||||||||| ||| ||||| || |||||  ||| ||||||||||||||||||||    
T  17474277 cattaagatttgttgaaaagcttcaaatcagggacgttggatctttgccggatagggataatgtcattgattaga 17474203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 19555493 - 19555426
Alignment:
Q  17 tcatcacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||| ||| |||| ||||||||||||||||||||||||| |||| | ||||| |  |||||||||||    
T  19555493 tcatcgcataaagattcgttgagaagcttcaaatcaaggacgttgagccattgtcgtatatggataat 19555426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 8911581 - 8911642
Alignment:
Q  28 agagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcatt 90  Q
    ||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||| |||||    
T  8911581 agagtcgttgagaagcttc-aatcaaggatgttggctctttgtctgatatgggtaatttcatt 8911642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 18445865 - 18445903
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttg 61  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  18445865 cattaagagtcgttgagaagctttaaaccaaggatgttg 18445903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 13291862 - 13291588
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------------- 108  Q
    |||||||| ||||||||||| |||||||||||||  ||||| |||| ||| ||||||||||||  |||||||||||||||||||||                  
T  13291862 cattaagaatcgttgagaagtttcaaatcaaggacattgggccatttcctgatatggataatgcaattgattagacatttgaaatttctttgttgaaact 13291763  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    | ||||||||||||||||| ||| |||||| |||| ||||||||||||||||| || ||| || ||||||||||||| |||||| | ||| |||||||||    
T  13291762 gaaattatccgttcattctttttgtccttggagttctttgtttgtttctacacgtggtcagaagaagacaaattgtactatcagtgcctttatagagaca 13291663  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctt 283  Q
     | ||| |||||||||||||||| |||| || |||||||||| || |||||| | ||||||||||||||| ||||    
T  13291662 tctacaaaagaggataaatctgacgtggcttttgggtccctcaggatcttctgtacttcagagtctgatgctctt 13291588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 10928886 - 10929069
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatt--------------tgaaa 106  Q
    ||||||||||||||||||||||||| |||||||||||| | |||| |||||| |||||||||||| |||||||||||||||              |||||    
T  10928886 cacattaagagtcgttgagaagcttgaaatcaaggatgataggtctttgcctgatatggataatgccattgattagacattcaaaattccattgctgaaa 10928985  T
Q  107 ttggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatc 190  Q
     ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||| || | ||||||||||||||||    
T  10928986 ctggaattatccattcattctctttatccttgaagttccttgtttgtttctacacatggtcagaagaggacaaattgtattatc 10929069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 14427396 - 14427170
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatt--------------tgaaatt 108  Q
    |||||||| |||||||||| | |||||||||| |||||||||| || |||||||||||||||||| |||| ||||||||              |||| ||    
T  14427396 cattaagattcgttgagaaacatcaaatcaagaatgttgggtcttttcctaatatggataatgtcgttgagtagacattcaaatttcctttcatgaactt 14427297  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    ||||||||| ||||||||||| | ||||||||||| ||||||||||| ||||| || | | || ||||||||||||| ||||||| | ||||||||||||    
T  14427296 ggaattatctgttcattctctatgtccttgaagttctttgtttgtttatacacgtggttagaaaaagacaaattgtactatcagact-ttgatagagaca 14427198  T
Q  209 acaacataagaggataaatctgatgtgg 236  Q
    || ||| |||| || |||||||| ||||    
T  14427197 actacagaagaagacaaatctgacgtgg 14427170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 4514608 - 4514870
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaattg------------- 109  Q
    |||| ||||||||||||||| ||||||||||||| ||| |||| |||||| ||| |||||||||| | |||||  |||||||||||                  
T  4514608 cattgagagtcgttgagaagtttcaaatcaaggacgttaggtctttgcctgataaggataatgtcgtggattattcatttgaaattccttttgctgcaac 4514707  T
Q  110 --gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagac 207  Q
      |||||||| |||| |||||||| | ||||||||| ||||||| |||  |||| || ||| |  |||||||| |||| | |||||||||||||| ||||    
T  4514708 tagaattatctgttcgttctctttgtacttgaagttctttgttttttt--acacgtggtcagaggaagacaaactgtactttcagagtcttgataaagac 4514805  T
Q  208 aacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagt 272  Q
      | ||||||||||| |||| ||| | ||||||| |||||||  |||||||||||||||||||||    
T  4514806 tgctacataagaggacaaatttgacgaggattctaggtccctaagggtcttctattcttcagagt 4514870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 17119043 - 17119189
Alignment:
Q  103 gaaattggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgata 202  Q
    |||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||| || || ||| || ||||||||||||| || || | || |||||    
T  17119043 gaaactggaattatcagttcattctctttgtccttgaagttctttgtttgtttctatacgtgatcagaagaagacaaattgtactagcatactc-tgata 17119141  T
Q  203 gagacaacaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    |||  ||| ||||||||||| |||||| | | ||| ||||| ||||||    
T  17119142 gaggtaactacataagaggacaaatcttacgcggagtctggatccctc 17119189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 258
Target Start/End: Complemental strand, 17637582 - 17637420
Alignment:
Q  102 tgaaattggaattatccgttcattctctttatcctt------gaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagt 195  Q
    ||||||||||||||| | |||||||||||| |||||      |||||| ||||||||||||||||  || ||| || |||| |||||||| ||||| |      
T  17637582 tgaaattggaattattcattcattctctttgtccttaagcttgaagttctttgtttgtttctacatgtggtcagaagaagataaattgtactatcacata 17637483  T
Q  196 cttgatagagacaacaacataagaggataaatctgatgtggattctgggtccctctgggtctt 258  Q
    | ||||||  ||||| ||| ||||||| |||||||| |||||||||| |||||| ||||||||    
T  17637482 catgataggaacaactacagaagaggaaaaatctgacgtggattctgagtccctttgggtctt 17637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 19307107 - 19307045
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatg 85  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  19307107 cattaagagtcattgagaagcttcaaatcaaagatgttgggccatttcctgatatggataatg 19307045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 38076493 - 38076434
Alignment:
Q  27 aagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgt 86  Q
    |||||||||||| || ||||||||||||||||||  ||||||| ||||||||||||||||    
T  38076493 aagagtcgttgaaaaacttcaaatcaaggatgtttagtcattgtctaatatggataatgt 38076434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 38076388 - 38076297
Alignment:
Q  119 gttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaaca 211  Q
    ||||||| ||||| || |||||||| |||||||||||||  |||||  ||||| |||| |||||||| ||||||||| |||| ||||||||||    
T  38076388 gttcattttctttctctttgaagttctttgtttgtttctctacatggacaaaagaagataaattgtactatcagagtattga-agagacaaca 38076297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 4767808 - 4767763
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgttt 155  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||    
T  4767808 gaattatccgttcattctctctgtccttgaagttatttgtttgttt 4767763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 23955186 - 23955094
Alignment:
Q  197 ttgatagagacaacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 289  Q
    ||||| |||||| | ||| ||||||| |||||| ||| || |||| ||| |||| | ||||| | ||||| ||||||||||||||||||||||    
T  23955186 ttgatcgagacagctacagaagaggaaaaatctaatgcggcttcttggttcctcagtgtcttttgttctttagagtctgatggtctttagagt 23955094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 19905677 - 19905710
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaagga 56  Q
    |||||||||||||||||||| |||||||||||||    
T  19905677 cattaagagtcgttgagaagtttcaaatcaagga 19905710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 27486128 - 27486068
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||| || |||||||||||||||||||||| |||| | ||||| || ||||| |||||    
T  27486128 attaagaatcattgagaagcttcaaatcaaggaagttgagccattgtctgatatgtataat 27486068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 10646947 - 10646671
Alignment:
Q  26 taagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------------tgga 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||              ||||    
T  10646947 taagagtcattgagaagcttcaaatcaaggatgttgggtcattgcctgttatggataatgtcgttgattagacatttgaaattccttttctgtaactgga 10646848  T
Q  112 attatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaaca 211  Q
    |||||  ||||||||||||| ||||||||||| ||||||||||||||||  |  | | || | |||||| | || ||||||||||||| |||||||| |     
T  10646847 attatttgttcattctctttgtccttgaagttctttgtttgtttctacagttacttagaagatgacaaactatactatcagagtcttggtagagacagct 10646748  T
Q  212 acataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 289  Q
    ||| || |||| || ||||| |||  |||||||||||||| ||| ||||| |||||||||||||  ||||||||||||    
T  10646747 acaaaaaaggacaactctgacgtgtcttctgggtccctct-ggttttctaatcttcagagtctggaggtctttagagt 10646671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 1782933 - 1783209
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt------------ 108  Q
    ||||||||||||||  |||||| |||||||||||||||||  | ||||| |  ||||||| |||||| ||||||||||||||||||||                
T  1782933 cacattaagagtcgaagagaagtttcaaatcaaggatgtttagccattgtcggatatggacaatgtcgttgattagacatttgaaattcctttactacaa 1783032  T
Q  109 --ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
      ||||||||||||||||||||||| | ||||||||| ||||||| ||| ||||| || ||| || | ||||||||||| ||||||||||||||| ||||    
T  1783033 cgggaattatccgttcattctctttgttcttgaagttctttgtttatttttacacgtggtcagaagaggacaaattgtactatcagagtcttgattgaga 1783132  T
Q  207 caacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctt 283  Q
    || | ||| ||||||| |||| ||| |||  |||||||||||||  | |  | ||||| ||||||||||||||||||    
T  1783133 catctacagaagaggacaaatatgacgtgtcttctgggtccctcatgattctatattcctcagagtctgatggtctt 1783209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 32957526 - 32957765
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------------- 108  Q
    |||| ||||||| | ||||||||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||| ||||||                  
T  32957526 catttagagtcgctaagaagcttcaaatcaataatgttgggtcattgtctgatatggataatgtcgttgattagacattcgaaattcctttgctgaaact 32957625  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||  || ||| || ||||||||||||||||||||| | ||||||||||||    
T  32957626 ggaattatctgttcattatctttgtccttgaagttctttgtttgtttctacatgtggtcagaa-aagacaaattgtattatcaga-ttttgatagagaca 32957723  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    || | | || |||| |||||||| ||| | |||| |||||||    
T  32957724 actatagaaaaggacaaatctgacgtgaagtctgagtccctc 32957765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 17891528 - 17891356
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat-------------tg 109  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| ||| |||||||||||||  |||||||||||||||||||             ||    
T  17891528 cattaagagtcactgagaagcttcaaatcaaggatgttgggccattacctgatatggataatgttgttgattagacatttgaaattcctttgctgaactg 17891429  T
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaatt 182  Q
    ||||||||| |||||| ||||| |||||||| || ||||||||||||||||| || |||| | | ||||||||    
T  17891428 gaattatccattcattatctttgtccttgaaattctttgtttgtttctacacgtggtcaacaaaggacaaatt 17891356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 27707494 - 27707255
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat-------------tg 109  Q
    |||||||||||||||||||||||||||||||| | ||||| || |||||| ||||||||| |  |||||||||||||||||||||             ||    
T  27707494 cattaagagtcgttgagaagcttcaaatcaagaaagttggatctttgcctgatatggatagttccattgattagacatttgaaattccttgctaaaactg 27707395  T
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
     ||||||| ||| ||||| ||| || |||||||| ||||||||||||||||  || ||| || | ||||||||||| ||| ||| | |||||||||||||    
T  27707394 aaattatcagtttattctttttgtctttgaagttctttgtttgtttctacatgtggtcagaagaggacaaattgtactattagact-ttgatagagacaa 27707296  T
Q  210 caacataagaggataaatctgatgtggattctgggtccctc 250  Q
    | ||| ||||||| |||| |||  || | ||||||||||||    
T  27707295 ctacaaaagaggacaaatttgacatgaagtctgggtccctc 27707255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 1777246 - 1777160
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat 107  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||| ||| | | ||||||||||    
T  1777246 cacattatgagtcgttgagaagcttcaaatcaaggacgttgggccattgactaatatggataatttcaatgaatggtcatttgaaat 1777160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 8105711 - 8105846
Alignment:
Q  139 aagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaacaacataagaggataaatctgatgtggat 238  Q
    ||||| ||||||||||||||||| || | |||| | |||||| |||| ||||||| | |||||||||||||| ||| |||| ||  ||||||||||||      
T  8105711 aagttctttgtttgtttctacacgtggttaaaaaaggacaaactgtactatcagact-ttgatagagacaactacaaaagaagactaatctgatgtggtg 8105809  T
Q  239 tctgggtccctctgggtcttctattcttcagagtctg 275  Q
    ||||||||||||  | |||||| | ||||||||||||    
T  8105810 tctgggtccctcaagatcttctgtacttcagagtctg 8105846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 22975207 - 22975269
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataa 83  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||| | ||||||||||    
T  22975207 cacattaagagccgttgagaagcttcaaatcaaggacgttgagtcattgcatgatatggataa 22975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 26822351 - 26822447
Alignment:
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
    |||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||  | | || |||| |||||||| ||||||| | ||||||||||    
T  26822351 ggaattatccattcgttctctttgtccttgaagttctttgtttgtttctacacatagtgagaagaagataaattgtactatcaga-ttttgatagaga 26822447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 5265184 - 5265271
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggata--atgtcattgattagacatttgaaatt 108  Q
    |||||| | |||||||||||||| |||||||||| ||||||  |||| ||||||||||||  ||||| || |||| ||||||||||||    
T  5265184 cattaaaattcgttgagaagctttaaatcaaggacgttgggatattgtctaatatggataatatgtcgttaattaaacatttgaaatt 5265271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 5265356 - 5265454
Alignment:
Q  182 tgtattatcagagtcttgatagagacaacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtc 281  Q
    |||| ||||||||| |||||||||||||| ||| |||| || |||||||| |||| ||||||||||||| | ||||| | | |||| |||| ||||||||    
T  5265356 tgtactatcagagt-ttgatagagacaactacagaagaagacaaatctgacgtggcttctgggtccctcagagtcttatgtacttcggagtttgatggtc 5265454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 12733626 - 12733764
Alignment:
Q  112 attatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaaca 211  Q
    ||||| |||||||||| ||| ||||||||||| ||||||||| ||| || ||  ||| || |||||||| | || |||| | ||| | |||||||||||     
T  12733626 attattcgttcattctttttgtccttgaagttctttgtttgtatctgcaaataatcagaagaagacaaactttactatctgcgtc-taatagagacaact 12733724  T
Q  212 acataagaggataaa-tctgatgtggattctgggtccctc 250  Q
     |||||||||| ||| |||||  |||||| ||||||||||    
T  12733725 tcataagaggacaaattctgacatggattatgggtccctc 12733764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 30806014 - 30805745
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaattg------------- 109  Q
    ||||||||||||||||||||||||||||||||||  ||||  |||||||| |||||||||||||| ||||||||||||| ||||||                  
T  30806014 cattaagagtcgttgagaagcttcaaatcaaggacattggaccattgcctgatatggataatgtcgttgattagacattcgaaattcctttcatgaaact 30805915  T
Q  110 -gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
     |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||  || || ||||||||||||| ||||||||| ||||||||||||    
T  30805914 agaattatccgttcattgtctttctccttgaagttctttgtttgtttctacacgtggccagaagaagacaaattgtactatcagagtattgatagagaca 30805815  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatg 278  Q
    || | | |||| || |||||||| ||| |||| | |||| || || |||||| | ||||| |||||||||    
T  30805814 actatagaagatgacaaatctgacgtgaattccgagtccatcaggatcttctgtacttcaaagtctgatg 30805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 33438858 - 33439099
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatt----------------tgaaa 106  Q
    |||||||| ||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||                |||||    
T  33438858 cattaagaatcgttgagaaatttcaaatcaaggaagttgggtcattgcctgatatggataatgtcattgattagacattcataatttttttttgctgaaa 33438957  T
Q  107 ttggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
     |||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||| || ||| || |||| |||||||||||||||||||||||||||||    
T  33438958 ctggaattatccgctcattatctttgtccttgaagttctttgtttgcttatacacgtggtcagaagaagataaattgtattatcagagtcttgatagaga 33439057  T
Q  207 caacaacataagaggataaatctgatgtggattctgggtccc 248  Q
    |||| ||| || | ||||||| ||| |||| |||| ||||||    
T  33439058 caactacagaaaatgataaatttgacgtggcttctaggtccc 33439099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 12397744 - 12397829
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  12397744 cattaagagtcgttgagaagtttcaaatcaaggatgttggatcattgcctgatatggataatgtcattgattaaacatttgaaatt 12397829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 289
Target Start/End: Complemental strand, 17316479 - 17316291
Alignment:
Q  100 tttgaaattggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttg 199  Q
    ||||||| | ||||||| | |||||| ||||| ||||| |||||  ||||||||||||||||||| ||| || ||||||||||||| ||||||| | |||    
T  17316479 tttgaaactagaattattctttcattttctttgtccttaaagttccttgtttgtttctacacatggtcagaagaagacaaattgtactatcagact-ttg 17316381  T
Q  200 atagagacaacaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 289  Q
    ||||||||||| |||||||| || |||||||| ||||  ||||||||||||  | |||| | | ||||||||||||||| || |||||||    
T  17316380 atagagacaactacataagaagacaaatctgacgtggtgtctgggtccctcaagatcttttgtacttcagagtctgatgatccttagagt 17316291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 19003304 - 19003152
Alignment:
Q  22 acattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat-------------- 107  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||| |||||||| |||||||||||||||||||                  
T  19003304 acattaagagtcgttgagaagcttcaaatcaaggatgttagaccattacctaatatgaataatgtcgttgattagacatttgaaatttctttgctaaaac 19003205  T
Q  108 tggaattatccgttcattctctttatccttgaagttttttgtttgtttctaca 160  Q
    || ||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  19003204 tgaaattatccgttcattctctttgtccttgaaattctttgtttgtttctaca 19003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 26897986 - 26898255
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------------t 108  Q
    ||||||||||||||||||| ||| ||||||| |||||| |  |||||||| ||||||||||| ||||||||||||||||||||||              |    
T  26897986 cattaagagtcgttgagaaactttaaatcaaagatgttagaccattgccttatatggataatctcattgattagacatttgaaatttctttactgaaact 26898085  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
     |||||||  ||| ||| | ||| |||||| |||| ||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| |||     
T  26898086 agaattatttgttaattatttttgtccttgcagttctttgtatgtttctacacgtggtcagaagaagacaaattgtactatcagagtcttgatagggacg 26898185  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatg 278  Q
    ||  ||||| |||| |||| ||||||   || |||||||||| |  | |||| | |||||||||||||||    
T  26898186 actgcataaaaggacaaatttgatgtatcttttgggtccctcagaattttctgtacttcagagtctgatg 26898255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 15787945 - 15787882
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  15787945 cacattaagagtcattgagaagcttcaaatcaaggatgttgggccattgcctaatttgaataat 15787882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 22666194 - 22666436
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------------- 108  Q
    ||||||||||| |||||||||||  ||||||||||||| |  |||||||| | ||||||||| |||| || ||| |||||||||||                  
T  22666194 cattaagagtcattgagaagctttgaatcaaggatgttagaccattgcctgacatggataatttcatcgaatagtcatttgaaattttttcgcttaaact 22666293  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagac-aaattgtattatcagagtcttgatagagac 207  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| |||||||||| || | | || ||||| |||||||| ||||| |  ||||||||| ||    
T  22666294 ggaattatctgttcattctctttgtccttgaagttctttgttcgtttctacacgtggttagaagaagacaaaattgtactatcatatgcttgatagaaac 22666393  T
Q  208 aacaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    ||| ||| | || ||  ||||  ||||||| ||||||||||||    
T  22666394 aactacagatgacgacgaatccaatgtggagtctgggtccctc 22666436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 12669269 - 12669208
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||    
T  12669269 catttagagtcgttgagaagcttcaaatcaaggacgttgggtaattgcctgatatggataat 12669208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 18932869 - 18932782
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    ||||||||||||| | |||||| |||||||||| ||| ||||  |||| ||| |||||||||||||| |||||||| |||||||||||    
T  18932869 cacattaagagtcatcgagaagtttcaaatcaatgatattggaccatttcctgatatggataatgtcgttgattaggcatttgaaatt 18932782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 19019301 - 19019240
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  19019301 cattaagaatcgttgagaagattcaaatcaagggtgtttggtcattgcctgatatggataat 19019240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 17496817 - 17496732
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||||||||| ||||||||||||||| |   | || |||||||| ||||||||||| || |||| ||| |||||||||||    
T  17496817 cattaagagtcgttgaaaagcttcaaatcaagaacaatagggcattgcctgatatggataatttcgttgaatagtcatttgaaatt 17496732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 17103401 - 17103349
Alignment:
Q  108 tggaattatccgttcattctctttatccttgaagttttttgtttgtttctaca 160  Q
    |||||||||| ||||||||||||||||||| ||||| ||||| ||| ||||||    
T  17103401 tggaattatctgttcattctctttatccttaaagttctttgtctgtatctaca 17103349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 21721186 - 21721122
Alignment:
Q  133 tccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtct 197  Q
    ||||||||||| ||||||||| | |||||||| ||| || ||||||||||||| |||| ||||||    
T  21721186 tccttgaagttctttgtttgtatttacacatgatcagaagaagacaaattgtaatatccgagtct 21721122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 12669177 - 12669123
Alignment:
Q  101 ttgaaattggaattatccgttcattctctttatccttgaagttttttgtttgttt 155  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||| ||||| |||||    
T  12669177 ttgaaactggaagtatccattcattctctttgtccttgaagttctttgtctgttt 12669123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 15787832 - 15787772
Alignment:
Q  120 ttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaa 180  Q
    |||||||||||| ||||||||||  ||| ||||||||||||| || ||| || ||||||||    
T  15787832 ttcattctctttgtccttgaagtcctttatttgtttctacacgtgatcagaagaagacaaa 15787772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 17316555 - 17316523
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaagg 55  Q
    ||||||||||||||||||| |||||||||||||    
T  17316555 cattaagagtcgttgagaatcttcaaatcaagg 17316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 28890222 - 28890462
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------------t 108  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||| ||||||||||||| |||||              |    
T  28890222 cattaagagtcgttgagaagcttcaaatcaaggatgttggttttttgcctgatatggataatgtcgttgattagacattcgaaattcctttgctaaaatt 28890321  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    |||||| || ||||||||||||| | |||||||||   |||||||||||||||||| ||| || | |||||||||||| |||||| | ||||||||||||    
T  28890322 ggaattttctgttcattctctttgttcttgaagttccatgtttgtttctacacatggtcagaagaggacaaattgtatgatcagact-ttgatagagaca 28890420  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    || |||||||||||| ||||||| ||||  ||| ||||||||    
T  28890421 actacataagaggatgaatctgacgtggtgtctaggtccctc 28890462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 23521148 - 23520950
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------------- 108  Q
    ||||||||||||||| |||| ||||||||||| |||||||| |||| ||| ||||| |||||||| ||||||||||||||||||||                  
T  23521148 cattaagagtcgttgggaagtttcaaatcaagaatgttgggccattacctgatatgaataatgtcgttgattagacatttgaaattactttgctgcaaca 23521049  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
     ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| || |||||| | |||||||||||  |||||||| || |||||||||    
T  23521048 tgaattatccattcattctctttgtccttgaagttttttgtctgtttttacacgtggtcaaaagatgacaaattgtacaatcagagt-ttaatagagaca 23520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 24277358 - 24277099
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------------tg 109  Q
    |||||||||| |||| | |||| |||| |||||||||||| |||||||| |||||||| ||||| |||||| ||||||||||||              ||    
T  24277358 attaagagtcattgaaatgctttaaataaaggatgttggg-cattgcctgatatggat-atgtcgttgatttgacatttgaaattcctttattgaaactg 24277261  T
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
     ||||||||||||||||||||| ||||||||||| |||||||| |||||||| || | | || |||| ||| |||| ||||||||| | ||||||||||     
T  24277260 aaattatccgttcattctctttgtccttgaagttatttgtttgcttctacacgtggttagaagaagataaagtgtactatcagagtttagatagagacat 24277161  T
Q  210 caacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagag 271  Q
    | ||| ||||||| |||||||| ||| ||  ||||||||| |||||||| | || |||||||    
T  24277160 ccacaaaagaggacaaatctgacgtgaatgttgggtccctgtgggtcttttgttattcagag 24277099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 25724742 - 25724637
Alignment:
Q  105 aattggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgataga 204  Q
    |||||||||||||| |||||||||||| |||||||| || ||||||||| ||||||| || | | || ||||||| ||||| ||||||| ||||||| ||    
T  25724742 aattggaattatcctttcattctctttgtccttgaaattctttgtttgtatctacacgtggttataagaagacaatttgtactatcagattcttgatgga 25724643  T
Q  205 gacaac 210  Q
    ||||||    
T  25724642 gacaac 25724637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 23585089 - 23584847
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaattg----------- 109  Q
    |||||||||||||||| |||| ||||||| ||| || |||| ||| ||||||||| |||||||| |  |||||| |||||||||||||                
T  23585089 cacattaagagtcgttaagaatcttcaaaacaacgacgttgagtctttgcctaatttggataattttgttgattggacatttgaaatttctttgttgaaa 23584990  T
Q  110 ---gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
       |||  ||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||| || |||||||| |||| ||||||| | ||||||||||    
T  23584989 ctagaacaatccgttcattctctttgtccttgaagttctttgtttgtttatacacgtggtcagaataagacaaagtgtactatcagact-ttgatagaga 23584891  T
Q  207 caacaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    || | ||| |||| || |||||| | | ||| |||| |||||||    
T  23584890 cagctacaaaagaagacaaatctaacgcggagtctgagtccctc 23584847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 26576541 - 26576580
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgg 62  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26576541 cattaagagtcgttgagaagcttcaaatcaaggacgttgg 26576580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 25727663 - 25727581
Alignment:
Q  26 taagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    ||||||||||||| |||||| ||||| ||   ||| || | |||||| ||||| |||||||| ||||||||||||||||||||    
T  25727663 taagagtcgttgataagcttaaaatctagatagttaggactttgcctgatatgaataatgtcgttgattagacatttgaaatt 25727581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 24502764 - 24502722
Alignment:
Q  66 attgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||||||||||||||| |||||  |||||||||||||    
T  24502764 attgcctaatatggataatgtcgttgatgggacatttgaaatt 24502722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 24502706 - 24502554
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
    ||||| || ||||||||  ||| || || ||||| ||||||||||||| |||||| | | || |||||||||  ||||||| ||||| ||||||||||||    
T  24502706 gaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgattagaataagacaaatcatattatctgagtc-tgatagagacaa 24502608  T
Q  210 caacataagaggataaa-tctgatgtggattctgggtccctctgggtcttctat 262  Q
    |  || ||||| | ||| | |||  |||||||| |||||||| | |||||||||    
T  24502607 cttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttctat 24502554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13645209 - 13645264
Alignment:
Q  28 agagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||||||||||| ||||||| |||||||  | |||||| |||||||||||    
T  13645209 agagtcgttgagaagcttc-aatcaagaatgttggccctttgcctgatatggataat 13645264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13745634 - 13745689
Alignment:
Q  28 agagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||||||||||| ||||||| |||||||  | |||||| |||||||||||    
T  13745634 agagtcgttgagaagcttc-aatcaagaatgttggccctttgcctgatatggataat 13745689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 16917581 - 16917316
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt-------------- 108  Q
    |||||||||||||||||||| ||||||||| ||||||| |  | |||| | ||||| ||||  || ||||||||||||||||||||                  
T  16917581 cattaagagtcgttgagaagattcaaatcacggatgttagaactttgcatgatatgtataaattcgttgattagacatttgaaattcctttgctgaaact 16917482  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    | || |||||| ||||||||||| |||||||| ||  |||||||| ||||||| || |||||| |||| |||||||| ||||||||||||||||| ||||    
T  16917481 gaaagtatccgatcattctctttgtccttgaaattccttgtttgtatctacacgtggtcaaaagaagaaaaattgtactatcagagtcttgatagcgaca 16917382  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtct 274  Q
    || |||||||| || ||||||||||||| |||||| |||||| || |||| | |||||||||||||    
T  16917381 actacataagaagaaaaatctgatgtggcttctggatccctcaggctcttatgttcttcagagtct 16917316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 19878232 - 19877953
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaattg------------- 109  Q
    ||||||||||||||||||||| || |||||||||  |||||  ||| ||| |||||||||||||| ||||||||| ||||||||||                  
T  19878232 cattaagagtcgttgagaagcatctaatcaaggagtttgggatatttcctgatatggataatgtcgttgattagatatttgaaattcctttgtttcaact 19878133  T
Q  110 -gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
     ||||||||| |||||| ||||| |||||||| |||||||| ||||||| |||||| ||| || | ||||||| ||| |||||| || |||||||||| |    
T  19878132 agaattatccattcattatctttgtccttgaatttttttgtctgtttctccacatggtcagaagatgacaaatggtactatcagggt-ttgatagagata 19878034  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagt 289  Q
    || ||| |||| || |||||||| |||| || |||| ||||| | ||||||| ||||| ||||||||||||||||||||||    
T  19878033 actacaaaagaagacaaatctgacgtggcttttgggcccctcagagtcttctgttctttagagtctgatggtctttagagt 19877953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 28449537 - 28449378
Alignment:
Q  119 gttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaacaacataag 218  Q
    ||||||||||||| ||||| ||||| |||||| |||||||||| || ||| || |||||| |||||| ||||| |||||||||||||| |   ||| |||    
T  28449537 gttcattctctttgtcctttaagttctttgttggtttctacacgtggtcagaagaagacacattgtactatcaaagtcttgatagagaaatatacaaaag 28449438  T
Q  219 aggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatg 278  Q
    |||| |||||||| ||||||| || ||||||||||||||||| |||||||||||||||||    
T  28449437 aggaaaaatctgacgtggattatgagtccctctgggtcttctgttcttcagagtctgatg 28449378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 16587261 - 16587042
Alignment:
Q  31 gtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaattg--------------gaattat 116  Q
    ||||||||||||||||||||||||||||||||||| ||| || ||||| |||||    ||||||||||||||||||||               |||||||    
T  16587261 gtcgttgagaagcttcaaatcaaggatgttgggtctttgtctgatatgaataattctgttgattagacatttgaaattcctttgcataaactagaattat 16587162  T
Q  117 ccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaacaacata 216  Q
     | |||||||||||| |||||||||||  |||||||||| ||||  || ||| || |||||||| | || ||||||| | ||| |||||||||| |||||    
T  16587161 tctttcattctctttgtccttgaagttcattgtttgtttgtacatgtggtcagaagaagacaaactatactatcagact-ttggtagagacaactacata 16587063  T
Q  217 agaggataaatctgatgtgga 237  Q
    |||||| ||||||||||||||    
T  16587062 agaggacaaatctgatgtgga 16587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 21748686 - 21748602
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||  | |||| ||| |||||||||||    
T  21748686 attaagagtcgttgaaaagcttcaaatcaaggacgttggatcattgcctaatatggataatcccgttgaatagtcatttgaaatt 21748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 27765777 - 27765606
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt--------------g 109  Q
    ||||||||||||||||||||||||||||||| |  || |||| ||| || |||||||||||| | ||||||| |||||  |||||              |    
T  27765777 attaagagtcgttgagaagcttcaaatcaagaacattaggtctttgtcttatatggataatgacgttgattatacattcaaaattcctttgttgaagccg 27765678  T
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaat 181  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||||| || ||| || |||||||||    
T  27765677 gaattatccgttcattctctctgtccttgaagttctttgtttgtttctacacgtggtcagaagaagacaaat 27765606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 21548468 - 21548407
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggata 82  Q
    |||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||    
T  21548468 cacattaagagtcgttgagaagcttcaaatgaaggacgttgggccattgcctgatatggata 21548407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 35666237 - 35666154
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||||||||||| |||||| |||||||  | |||  ||||||| |||||||||||| ||||||||||||||||||||||    
T  35666237 attaagagtcgttgagaaacttcaa-tcaaggacatcgggatattgcctcatatggataatgacattgattagacatttgaaatt 35666154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 25916768 - 25916710
Alignment:
Q  26 taagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||    
T  25916768 taagagtcgttgagaagcttcaaatcaaggacgttgagccattgcctgatatggataat 25916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 45622057 - 45621996
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||| |||||||| ||| |||||||||||||| | |||||||| |||||||||||    
T  45622057 cattaagagtctttgagaagtttccaatcaaggatgttgaggcattgcctgatatggataat 45621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 35666139 - 35666041
Alignment:
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    |||||||||||||  |||||||| ||||||||||| ||||| | ||||||||  || ||  || | ||||||||||| ||||||||| |||||| |||||    
T  35666139 ggaattatccgttagttctctttttccttgaagttctttgtctatttctacatgtggtcggaagatgacaaattgtactatcagagt-ttgatatagaca 35666041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 29409549 - 29409609
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||| ||||||| |||||||||||||| | |||| |||||| | |||||||||||    
T  29409549 cattaagagtctttgagaaacttcaaatcaaggacg-tggggcattgcatgatatggataat 29409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 42256264 - 42256297
Alignment:
Q  75 tatggataatgtcattgattagacatttgaaatt 108  Q
    |||||||||| |||||||||||||||||||||||    
T  42256264 tatggataatatcattgattagacatttgaaatt 42256297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 16495750 - 16495698
Alignment:
Q  191 agagtcttgatagagacaacaacataagaggataaatctgatgtggattctgg 243  Q
    ||||||||||||| ||||||   | ||||||||||||||||||||| ||||||    
T  16495750 agagtcttgatagggacaactttagaagaggataaatctgatgtggcttctgg 16495698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 42256308 - 42256400
Alignment:
Q  105 aattggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtct 197  Q
    |||| |||||| ||||||||||  ||| | ||||||||| ||||||||| ||| ||| || | | || |||||||| |||| |||||||||||    
T  42256308 aattagaattacccgttcattccttttgtacttgaagttctttgtttgtatctgcacgtggttacaagaagacaaaatgtactatcagagtct 42256400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 26013753 - 26013903
Alignment:
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||| | ||||||||||||    
T  26013753 ggaattatccgtttgttctctttttccttgaagttctttgtttgtttctacacatggtcagaagaagacaaattgtactatcaga-ttttgatagagaca 26013851  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctctgggtcttct 260  Q
    || ||| |||| || |||||||| ||||| |||  |||||||| | ||||||    
T  26013852 actacagaagatgacaaatctgacgtggagtctaagtccctctagatcttct 26013903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 22826169 - 22826309
Alignment:
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagaca 208  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||||| || ||| || |||| ||| |||| ||||||| | |||||||||| |    
T  22826169 ggaattatccgttcattctatttgtccttgaatttttttgtttgtttctacacgtggtcagaagaagataaactgtactatcagact-ttgatagagaaa 22826267  T
Q  209 acaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    || ||| || |||| ||||  || ||||| ||||||||||||    
T  22826268 actacaaaataggacaaattagacgtggagtctgggtccctc 22826309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 27499836 - 27499955
Alignment:
Q  111 aattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaac 210  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |||||| | ||||||||||| |||| || | ||||||||||||||    
T  27499836 aattatccgttcattctctttatctttgaagttatttgtctgtttctacacgtggtcaaaagatgacaaattgtactatctgaat-ttgatagagacaac 27499934  T
Q  211 aacataagaggataaatctga 231  Q
     | | |||| || ||||||||    
T  27499935 tataaaagatgacaaatctga 27499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 37336664 - 37336715
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacac 161  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37336664 gaattatccgttcattctctttgtccttgaagttctttgtttgtttctacac 37336715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 30608437 - 30608346
Alignment:
Q  17 tcatcacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    ||||| |||||||||| ||||||||| ||||||||||||| |||||  |||| ||| |||||||||||  | |||| ||  |||||||||||    
T  30608437 tcatcgcattaagagttgttgagaagtttcaaatcaaggacgttggaccatttcctgatatggataattccgttgaatattcatttgaaatt 30608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 26335636 - 26335539
Alignment:
Q  108 tggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagaga 206  Q
    ||||||||||||||||||   ||| ||||||| ||| ||| ||||| ||| |||||| ||| || | ||||||||||| |||||||||| |||||||||    
T  26335636 tggaattatccgttcatttcttttgtccttgaggttctttatttgtatctgcacatggtcagaagaggacaaattgtactatcagagtc-tgatagaga 26335539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 24492605 - 24492544
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    |||||||| |||||||||| | |||||||||||| |||||| ||| |||| |||||||||||    
T  24492605 cattaagaatcgttgagaaacatcaaatcaaggacgttgggccatcgcctgatatggataat 24492544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 6999096 - 6999033
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||| |||||||||||||||| ||||||||||||| |||| | |||||||  ||||| |||||    
T  6999096 cacataaagagtcgttgagaagtttcaaatcaaggacgttgagccattgccagatatgtataat 6999033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 26013654 - 26013692
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgg 62  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  26013654 attaagagtcattgagaagcttcaaatcaagaatgttgg 26013692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24838537 - 24838492
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcatt 68  Q
    ||||||||| | | |||||||||||||||||||| |||||||||||    
T  24838537 cattaagagacatcgagaagcttcaaatcaaggacgttgggtcatt 24838492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 249
Target Start/End: Complemental strand, 22562817 - 22562679
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
    ||||||||| |||| ||||||| |||||||| |  ||||||||||||||||| || ||| || || ||||| |||| ||||||| | || ||||||||||    
T  22562817 gaattatccattcactctctttgtccttgaattaatttgtttgtttctacacgtggtcagaagaaaacaaactgtactatcagact-tttatagagacaa 22562719  T
Q  210 caacataagaggataaatctgatgtggattctgggtccct 249  Q
    | ||| ||||||| |||||||| ||||||| |||||||||    
T  22562718 ctacagaagaggaaaaatctgacgtggattatgggtccct 22562679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 10814957 - 10814685
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt--------------g 109  Q
    |||||||||| |||||||||||||||||||| ||||| |  | |||| | |||||||||||  | || |||||||||||||||||              |    
T  10814957 attaagagtcattgagaagcttcaaatcaagaatgtttgccctttgcttgatatggataattccgttaattagacatttgaaattcctttgcagaaactg 10814858  T
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
     ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||| ||  ||||||||| || ||||||| | ||||||| |||||    
T  10814857 aaattatccgttcattctctttgtcctttaagttctttgtttgtttctacacgtggtcagaatgagacaaattatactatcagact-ttgatagtgacaa 10814759  T
Q  210 caacataagaggataaatctgatgtggattctgggtccctctgggtcttctattcttcagagtctgatggtctt 283  Q
    | ||| || | || ||||||||||| || || ||  |||||  | |||||| | |||| ||||||| |||||||    
T  10814758 ctacagaatatgacaaatctgatgtagagtccggtcccctcaagatcttctgtacttctgagtctggtggtctt 10814685  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 4097939 - 4097788
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaat--------------t 108  Q
    |||||||||||||||| ||  || |||||||||| ||||||  ||||||| |||||||||||||| ||||||||| |||||||||              |    
T  4097939 cattaagagtcgttgataaattttaaatcaaggacgttgggaaattgcctgatatggataatgtctttgattagaaatttgaaattcctttgttgaatat 4097840  T
Q  109 ggaattatccgttcattctctttatccttgaagttttttgtttgtttctaca 160  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||    
T  4097839 ggaattatcggttcattctctttgtccttgaagttctttgtttatttctaca 4097788  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 4312406 - 4312547
Alignment:
Q  108 tggaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagac 207  Q
    |||||||||| | ||||| | |||  |||||||||| ||||||||||||||||  || | | || |||| ||| | || ||||||| | |||||||||||    
T  4312406 tggaattatctggtcattttatttgcccttgaagttatttgtttgtttctacatgtggttagaagaagataaactctactatcagact-ttgatagagac 4312504  T
Q  208 aacaacataagaggataaatctgatgtggattctgggtccctc 250  Q
    ||| ||||||||||| |||||||| ||||| ||||||||||||    
T  4312505 aactacataagaggacaaatctgacgtggagtctgggtccctc 4312547  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 11704144 - 11704061
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaa 106  Q
    |||| |||||||||| |||||||||||||||| | ||||| | |||||||||||| ||||||||  ||||||||| ||||||||    
T  11704144 catttagagtcgttgtgaagcttcaaatcaagcacgttggattattgcctaatatagataatgttgttgattagatatttgaaa 11704061  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 18615405 - 18615342
Alignment:
Q  21 cacattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    |||||||||||| ||| ||||||||||||||||||| |||| | |||||||| |||| ||||||    
T  18615405 cacattaagagttgttaagaagcttcaaatcaaggacgttgagccattgcctgatattgataat 18615342  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 10821058 - 10821143
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataatgtcattgattagacatttgaaatt 108  Q
    ||||||||||| |||| ||||||  ||||| ||||||| |  |||||||| ||||||||||| || |||| ||| |||||||||||    
T  10821058 cattaagagtcattgaaaagctttgaatcatggatgttagaccattgcctgatatggataatttcgttgaatagccatttgaaatt 10821143  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 11704045 - 11703993
Alignment:
Q  108 tggaattatccgttcattctctttatccttgaagttttttgtttgtttctaca 160  Q
    ||||||||| |||||||||||||| | ||||||||| ||||||||||| ||||    
T  11704045 tggaattattcgttcattctctttgtacttgaagttctttgtttgtttataca 11703993  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 14271766 - 14271797
Alignment:
Q  27 aagagtcgttgagaagcttcaaatcaaggatg 58  Q
    ||||||||||||||||||||||||||||||||    
T  14271766 aagagtcgttgagaagcttcaaatcaaggatg 14271797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 19490871 - 19490932
Alignment:
Q  23 cattaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||| ||||||| |||| ||||||||| |||| | |||||| | |||||||||||    
T  19490871 cattaagagtcattgagaatcttcgaatcaaggacgttgagccattgcatgatatggataat 19490932  T

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Target: scaffold0053 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 27813 - 27873
Alignment:
Q  24 attaagagtcgttgagaagcttcaaatcaaggatgttgggtcattgcctaatatggataat 84  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  27813 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataat 27873  T

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Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 42242 - 42184
Alignment:
Q  103 gaaattggaattatccgttcattctctttatccttgaagttttttgtttgtttctacac 161  Q
    |||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  42242 gaaattggaattatccgttctttctttttgtccttgaagttctttgtttgtttctacac 42184  T

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Target: scaffold0650 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 5922 - 6021
Alignment:
Q  110 gaattatccgttcattctctttatccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatcagagtcttgatagagacaa 209  Q
    ||||||||  |||||||||||| ||| ||||||| ||| ||||||| ||||| |  ||| || |||||||| |||||||||| | | |||||||||||||    
T  5922 gaattatctattcattctctttgtccctgaagttctttctttgtttttacacgttgtcagaagaagacaaactgtattatca-aattttgatagagacaa 6020  T

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Target: scaffold0514 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 7285 - 7342
Alignment:
Q  133 tccttgaagttttttgtttgtttctacacatgttcaaaacaagacaaattgtattatc 190  Q
    ||||||||||| ||||||||||||| ||| || ||| || | ||||||||||||||||    
T  7285 tccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaattgtattatc 7342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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