View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9271_high_5 (Length: 240)

Name: NF9271_high_5
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9271_high_5
NF9271_high_5
[»] chr2 (14 HSPs)
chr2 (17-139)||(9357979-9358101)
chr2 (17-128)||(9316888-9316999)
chr2 (17-132)||(9292791-9292906)
chr2 (17-130)||(9060271-9060384)
chr2 (17-104)||(10348666-10348753)
chr2 (17-130)||(8572675-8572787)
chr2 (172-216)||(9358134-9358178)
chr2 (17-104)||(10336674-10336761)
chr2 (17-92)||(12018125-12018200)
chr2 (17-72)||(9329462-9329517)
chr2 (17-72)||(10372745-10372800)
chr2 (17-104)||(7114844-7114931)
chr2 (21-104)||(9283373-9283456)
chr2 (17-72)||(9321854-9321909)
[»] scaffold0667 (1 HSPs)
scaffold0667 (17-130)||(5322-5435)
[»] chr3 (1 HSPs)
chr3 (17-124)||(37463385-37463492)
[»] chr4 (1 HSPs)
chr4 (17-104)||(26575742-26575829)
[»] chr8 (1 HSPs)
chr8 (21-101)||(41965924-41966004)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 9357979 - 9358101
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  9357979 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaattttggcgagtatttccggcggaaggcggtcaacagc 9358078  T
Q  117 cattggaaggaaggttgttagga 139  Q
    |||||||||||||||||||||||    
T  9358079 cattggaaggaaggttgttagga 9358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 9316888 - 9316999
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||| || | || ||||| |||||||||||||||||||| | |||| | ||    
T  9316888 atttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgc 9316987  T
Q  117 cattggaaggaa 128  Q
    ||||||||||||    
T  9316988 cattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 9292791 - 9292906
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||| ||||||  || | |||||||||||||||||||| |||| | || ||||| |||| |||||| ||||||||||||||  | ||    
T  9292791 atttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaagatttcggcgactatttctggcggaaggcggtccgccgc 9292890  T
Q  117 cattggaaggaaggtt 132  Q
    ||| |||| |||||||    
T  9292891 catcggaaagaaggtt 9292906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 9060384 - 9060271
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||  || |||||||||||||  || ||||||||| | || ||||| || |||||||||||||||||    ||| | ||    
T  9060384 atttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtatttccggcggaagaacatcagccgc 9060285  T
Q  117 cattggaaggaagg 130  Q
    ||||||||||||||    
T  9060284 cattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 10348666 - 10348753
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 104  Q
    |||||||||||||||| |||||||  || ||||||||||||||||| ||||||||| | || ||||| ||||| || |||||||||||    
T  10348666 atttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcggcgagaatatccggcggaag 10348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 8572787 - 8572675
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||  || ||||||||||| |||||||||| |||| | || ||||||| || |||||||| ||||||    ||| | ||    
T  8572787 atttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgc 8572689  T
Q  117 cattggaaggaagg 130  Q
    ||||||||||||||    
T  8572688 cattggaaggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 9358134 - 9358178
Alignment:
Q  172 agagcaagttattgggtacccgcctaaccaaatattattacgcag 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  9358134 agagcaagttattgggtacccacctaaccaaatattattacgcag 9358178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 10336674 - 10336761
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 104  Q
    |||||||||||||||| |||||||  || ||||||||||||||||| ||||| ||| | || ||||| | ||| ||||||||||||||    
T  10336674 atttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaagatttcggagagaatttccggcggaag 10336761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 12018200 - 12018125
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtat 92  Q
    |||||||||||||||||||||| |  || || |||||||||||||||||||||||| | || ||||| ||||||||    
T  12018200 atttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggagaagatttcggcgagtat 12018125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 9329462 - 9329517
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 72  Q
    |||||||||||||||||||||| |  || ||||||||||||||||| |||||||||    
T  9329462 atttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 10372745 - 10372800
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 72  Q
    |||||| |||||||||||||||||  || ||||||||||||||||| |||||||||    
T  10372745 atttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 10372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 7114931 - 7114844
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 104  Q
    ||||||||||||||||||||||||  || || |||||||||  |||||||| |||  | || ||||| |  |||||||||||||||||    
T  7114931 atttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagatttcggatagtatttccggcggaag 7114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 9283456 - 9283373
Alignment:
Q  21 aagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 104  Q
    ||||||||| ||||||||||  || ||||| |||||||| |||||||||| | | || ||||| || ||||| |||||||||||    
T  9283456 aagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggagaagatttcggcaagtatgtccggcggaag 9283373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 9321854 - 9321909
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 72  Q
    ||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9321854 atttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 9321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 5322 - 5435
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||  || ||||||||||||||||| ||||||||| | || ||||| |||||| | ||||||||||||||||||   ||    
T  5322 atttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttctgcgagtgtgtccggcggaaggcggtcagacgc 5421  T
Q  117 cattggaaggaagg 130  Q
    ||||||||||||||    
T  5422 cattggaaggaagg 5435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 37463385 - 37463492
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaaggcggtcaacagc 116  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||| ||| | |  ||||| |||||||||||||||||||| | |||| | ||    
T  37463385 atttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgc 37463484  T
Q  117 cattggaa 124  Q
    ||||||||    
T  37463485 cattggaa 37463492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 26575742 - 26575829
Alignment:
Q  17 atttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcggaag 104  Q
    ||||||||||||||||||||||||  || |||||||||||| |||| ||||| ||| | || ||||| | ||| |||||||| |||||    
T  26575742 atttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttcggtgagaatttccggtggaag 26575829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 41966004 - 41965924
Alignment:
Q  21 aagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcggaacaaaatttcagcgagtatttccggcgg 101  Q
    ||||||||| || |||||||  || ||||||| ||||||||| |||||  || | || ||||||||||||||||| |||||    
T  41966004 aagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaagatttcagcgagtatttctggcgg 41965924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University