View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9271_low_1 (Length: 1578)

Name: NF9271_low_1
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9271_low_1
NF9271_low_1
[»] chr7 (4 HSPs)
chr7 (7-1578)||(30427325-30428902)
chr7 (537-885)||(10411928-10412300)
chr7 (528-640)||(47494122-47494240)
chr7 (1544-1578)||(15974972-15975006)
[»] chr4 (4 HSPs)
chr4 (528-885)||(498209-498582)
chr4 (1547-1578)||(27764238-27764269)
chr4 (1548-1578)||(50643742-50643772)
chr4 (1549-1578)||(45255975-45256004)
[»] chr2 (5 HSPs)
chr2 (574-660)||(17238690-17238776)
chr2 (528-589)||(615728-615794)
chr2 (1548-1578)||(20709773-20709803)
chr2 (1549-1578)||(18298147-18298176)
chr2 (1549-1578)||(25192892-25192921)
[»] chr8 (8 HSPs)
chr8 (573-751)||(9551487-9551673)
chr8 (1078-1145)||(43053165-43053231)
chr8 (751-845)||(9551374-9551470)
chr8 (1547-1578)||(32987481-32987512)
chr8 (898-945)||(43053006-43053053)
chr8 (1548-1578)||(1208708-1208738)
chr8 (1549-1578)||(39021975-39022004)
chr8 (1549-1578)||(42433701-42433730)
[»] chr5 (3 HSPs)
chr5 (528-881)||(17211479-17211864)
chr5 (1548-1577)||(23335744-23335773)
chr5 (1549-1578)||(28070189-28070218)
[»] chr1 (4 HSPs)
chr1 (743-885)||(49838597-49838747)
chr1 (1549-1578)||(18056784-18056813)
chr1 (1549-1578)||(22348039-22348068)
chr1 (1549-1578)||(23320129-23320158)
[»] chr6 (6 HSPs)
chr6 (571-665)||(9741330-9741426)
chr6 (825-885)||(19139863-19139923)
chr6 (1549-1578)||(2759826-2759855)
chr6 (1549-1578)||(15035011-15035040)
chr6 (1549-1578)||(33346407-33346436)
chr6 (1549-1578)||(34399641-34399670)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1545-1578)||(25268-25301)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1548-1578)||(13612-13642)
[»] scaffold0189 (1 HSPs)
scaffold0189 (1549-1578)||(11226-11255)
[»] chr3 (4 HSPs)
chr3 (1549-1578)||(8718101-8718130)
chr3 (1549-1578)||(9069988-9070017)
chr3 (1549-1578)||(19385351-19385380)
chr3 (1549-1578)||(51362474-51362503)


Alignment Details
Target: chr7 (Bit Score: 1335; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 1335; E-Value: 0
Query Start/End: Original strand, 7 - 1578
Target Start/End: Original strand, 30427325 - 30428902
Alignment:
Q  7 gagaagcagagagaggggctttgcggcggaaggaaagagaagaagaacgagatctgaaagaggagtgagcgaagagtgcgggtgtaatgttccttttaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30427325 gagaagcagagagaggggctttgcggcggaaggaaagagaagaagaacgagatctgaaagaggagtgagcgaagagtgcgggtataatgttccttttaaa 30427424  T
Q  107 gtgccggctcagagttgcgacgattgaggattgtgccattttctttcattcatcaatccttatgttaaattgtactaattattaatctaatgcccaccta 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30427425 gtgccggctcagagtcgcgacgattgaggattgtgccattttctttcattcatcaatccttatgttaaattgtactaattattaatctaatgcccaccta 30427524  T
Q  207 cccttgtggtagtgttttttagaccggcgagnnnnnnnnnnnn----aattagattgaactccggactcatcgtggtttgagcggaagaagaagaatgaa 302  Q
    |||||||||||||||||||||||||||||||                ||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  30427525 cccttgtggtagtgttttttagaccggcgagttttttttttttttttaattaaattgaactccggactcatcgtggtttgagcggaagaagaagaatgga 30427624  T
Q  303 tgaattagctacttaccgattgaatcaatctttattaatcgaccaacatcttttattagtatggagaaaatgttattacttttagtcaaataattgattg 402  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30427625 tgaattagctacttaccgattgaatcaatctttattaaccgaccaacatcttttattagtatggagaaaatgttattacttgtagtcaaataattgattg 30427724  T
Q  403 ttctatcattgtgacctaatgcggtcaatgagatttgagttcagttgatgaggagtttacgcggaagagtgatgtcaactctctctttcatcgtgatgat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30427725 ttctatcattgtgacctaatgcggtcaatgagatttgagttcagttgatgaggagtttacgcggaggagtgatgtcaactctctctttcatcgtgatgat 30427824  T
Q  503 ctatttagcgcgtaaattgtaaatactttcaaattgatcgttttttatatatcgcaatggcatattcacgataatcgaaaagagtagttacaaaaggttt 602  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30427825 ctatttagtgcgtaaattgtaaatactttcaaagtgatcgttttttatatatcgcaatggcatattcacgataatcgaaaagagtaattacaaaaggttt 30427924  T
Q  603 ttctaatgcgaagagattattatcttgtttaatgttgtttaaagtaaaagtcttatcttttttcag-aaaaagataaaaactaaggtcgtcttcgatgga 701  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  30427925 ttctaatgcgaaaagattattatcttgtttaatggtgtttaaagtaaaagtcttatcttttttcagaaaaaagataaaaattaaggtcgtcttcgatgga 30428024  T
Q  702 gccgttttgttcttatttagtttcttctgttttcaaatctatttcaacattgatttcagtcatttccctctcgtcgtattctaagatttcat-agtataa 800  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30428025 gtcgttttgttcttatttagtttcttctgttttcaaatctatttcaacattgatttcagtcatttccctctcgtcgtattctaagatttcatcagtataa 30428124  T
Q  801 aaatatgaaatcgtgttctgtctaaatagtgggccaagat-aacaagtgaaaaaacagcagatatttgacccacataatttcgcaaacaagaaatatatt 899  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30428125 aaatatgaaatcgtgttttgtctaaatagtgggccaagataaacaagtgaaaaaacagcagatatttgacccacataatttcacaaacaagaaatatatt 30428224  T
Q  900 ttcttaaccatcaaccaccaccaaacaagaatgttaacattatcaagaaaaaatgcaattgtcatctgcttctgatcgaacaccctgttatttatttctt 999  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30428225 ttcttaaccatcaaccaccaccaaacaagaatgttaacattatcaagaaaaaatgcaattgtcatctccttctgatcgaacaccctgttatttatttctt 30428324  T
Q  1000 ttcatataattcaacaaccggcactcaagttgcatgtaaccaacgccatacctctttactaagcaactaaccactgcgaaattggaacgcgtgaatctga 1099  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30428325 ttcatataattcaataaccggcactcaagttgcatgtaaccaacgccatacctctttactaagcaagtaaccactgcaaaattggaacgcgtgaatctga 30428424  T
Q  1100 gcattgatagacaaaacactatggacacctagccactttaagatttctcttcacagactaccgggnnnnnnnnntcatattcaaagaagaagtgattaga 1199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||           ||||||||||||||||||||||||||    
T  30428425 gcattgatagacaaaacactagggacacctagccactttaagatttctcttcacatactaccg----aaaaaaatcatattcaaagaagaagtgattaga 30428520  T
Q  1200 tatttcatcctttccacaaccgcattatcaaagtaagaactcagatgaatcatgccacgatcaatcaaattatcctttgtcgacaacctactgagaagta 1299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30428521 tatttcatcctttccacaaccgcattatcaaagtaagaactcagatgaatcatgccacgatcaatcaaattatcctttgtcgaaaacctactgagaagta 30428620  T
Q  1300 atattc----aaataaagacacttttaacggaatcaatttgttttggataaattttacaatctcaatctttaactaactaaattttacaaattaacatgg 1395  Q
    ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30428621 atattcaaataaataaagacacttttaacggaatcaatttgttttggataaattttacaatctcaatctttaactaactaaattttacaaattaacatgg 30428720  T
Q  1396 tgtggtattggtattaggtttcttacaagtgcatatcgaaaaccttcgtgttgaaagcgttcaatccttcaataagtcgttgtaatcatatataggtgta 1495  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30428721 tgtggtattggtattaggtttcttacaagtgcatgtcgaaaacc-tcgtgttgaaagcattcaatccttcaataagtcgttgtaatcatatataggtgta 30428819  T
Q  1496 gttttgattctgattaataaccctcctgcattgtcataagatagaaccaaattggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30428820 gttttgattctaattaataaccctcctacattgtcataagatagaaccaaattggcaaaagttatggtgcataaggaaatcct 30428902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 537 - 885
Target Start/End: Original strand, 10411928 - 10412300
Alignment:
Q  537 tgatcgttttttatatatcgcaatggc-at---attcacgataatcgaaaagagtagttacaaaaggtttttctaatgcgaagagattattatcttgttt 632  Q
    ||||||||||||||||||||||||||| ||   |||  ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |     
T  10411928 tgatcgttttttatatatcgcaatggctattccattttcgataatcgaaaagagtagttacaagaggtttttccaatgccaagagattattatcttgctc 10412027  T
Q  633 aatgttgtttaaagtaaaagtcttatcttttttcagaaaaagataaaaactaaggt------cgtcttcgatggagccgttttgttcttatttagtttct 726  Q
    ||||||||  |||||      ||||||||||||  ||||||||||| || |||| |      |||||||||||||||||||| |||||| ||||||||||    
T  10412028 aatgttgtccaaagt------cttatcttttttg-gaaaaagataagaaataagatatttttcgtcttcgatggagccgtttagttcttgtttagtttct 10412120  T
Q  727 tctgttttcaaatctatttc------------------aacattgatttcagtcatttccctctcgtcgtattctaagatttcat-agtataaaaatatg 807  Q
    || |||| | ||||||||||                  |||||||||||||| | ||||| |||| ||||||||||||||||||| ||||||||||||||    
T  10412121 tccgtttccgaatctatttcaacatcgatttctctttcaacattgatttcagccttttccttctcttcgtattctaagatttcataagtataaaaatatg 10412220  T
Q  808 aaatc-gtgttctgtctaaatagtgggccaagataac-aagtgaaaaaacagcagatatttgacccacataatttcgcaa 885  Q
     || | |||||||| | ||||||||||| |  ||||| || |||||||||| || |||||||||||||||||||||||||    
T  10412221 gaaccggtgttctgccaaaatagtgggcaacaataacaaaatgaaaaaacaacaaatatttgacccacataatttcgcaa 10412300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 528 - 640
Target Start/End: Complemental strand, 47494240 - 47494122
Alignment:
Q  528 ctttcaaattgatcgttttttatatatcgcaatggcatattca-----cgataatcgaaaagagtagtt-acaaaaggtttttctaatgcgaagagatta 621  Q
    |||| ||| |||| |||||||||||||||||||| | |||||      ||||||||||||||||||||| |||| || |||||| |||||||||| ||||    
T  47494240 cttttaaagtgattgttttttatatatcgcaatgacttattccattttcgataatcgaaaagagtagtttacaagagatttttccaatgcgaagaaatta 47494141  T
Q  622 ttatcttgtttaatgttgt 640  Q
    |||||||||| ||||||||    
T  47494140 ttatcttgttcaatgttgt 47494122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1544 - 1578
Target Start/End: Complemental strand, 15975006 - 15974972
Alignment:
Q  1544 aaattggcaaaagttatggtgcataaggaaatcct 1578  Q
    |||||||||||||||||||||||||||||||||||    
T  15975006 aaattggcaaaagttatggtgcataaggaaatcct 15974972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 528 - 885
Target Start/End: Complemental strand, 498582 - 498209
Alignment:
Q  528 ctttcaaattgatcgttttttatatatcgcaatggcatattca-----cgataatcgaaaagagtagttacaaaaggtttttctaatgcgaagagattat 622  Q
    |||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  498582 ctttcaaagtgatcgttttttatatatcgcaatggcctattccattttcgataatcgaaaagagtagttacaagaggtttttccaatgccaagagattat 498483  T
Q  623 tatcttgtttaatgttgtttaaagtaaaagtcttatcttttttcagaaaaagataaaaactaa------ggtcgtcttcgatggagccgttttgttctta 716  Q
    ||||||| | |||||| |        |||||||||||||||||| ||||||||||| ||  ||        |||||||||||||||||||||  |||||     
T  498482 tatcttgctcaatgttct------ccaaagtcttatcttttttcggaaaaagataagaaagaatatcttcttcgtcttcgatggagccgtttgtttcttg 498389  T
Q  717 tttagtttc---ttctgttttcaaatctatttcaacattgatttcagtcatttccctctcgtcgtattctaagatttcat-------agtataaaaatat 806  Q
    ||  |  ||   |||    |  |  ||| ||||| |||||||||||  | |||   ||||||||||||||||||||||||       |||||| ||||||    
T  498388 ttccgaatctatttcaacatcgatttctgtttcaccattgatttcatccttttgtttctcgtcgtattctaagatttcatcagtataagtatataaatat 498289  T
Q  807 gaaatc-gtgttctgtctaaatagtgggccaagataacaagtgaaaaaacagcagatatttgacccacataatttcgcaa 885  Q
    | || | |||||||| ||||||||||| | | |||||||| |||||||||| || |||||||||||||||||||||||||    
T  498288 ggaaccggtgttctgcctaaatagtggacaacgataacaaatgaaaaaacaacaaatatttgacccacataatttcgcaa 498209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1547 - 1578
Target Start/End: Original strand, 27764238 - 27764269
Alignment:
Q  1547 ttggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||||    
T  27764238 ttggcaaaagttatggtgcataaggaaatcct 27764269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1548 - 1578
Target Start/End: Original strand, 50643742 - 50643772
Alignment:
Q  1548 tggcaaaagttatggtgcataaggaaatcct 1578  Q
    |||||||||||||||||||||||||||||||    
T  50643742 tggcaaaagttatggtgcataaggaaatcct 50643772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 45255975 - 45256004
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  45255975 ggcaaaagttatggtgcataaggaaatcct 45256004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 574 - 660
Target Start/End: Complemental strand, 17238776 - 17238690
Alignment:
Q  574 taatcgaaaagagtagttacaaaaggtttttctaatgcgaagagattattatcttgtttaatgttgtttaaagtaaaagtcttatct 660  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| | ||||||||  ||||||||||||||||||    
T  17238776 taatcgaaaagagtagttacaagaggtttttcaaatgcgaagaaattattatcttgctcaatgttgtccaaagtaaaagtcttatct 17238690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 528 - 589
Target Start/End: Original strand, 615728 - 615794
Alignment:
Q  528 ctttcaaattgatcgttttttatatatcgcaatggcatattc-----acgataatcgaaaagagtag 589  Q
    |||||||| ||||||||||||||||||||||||||| |||||      |||||||||||||||||||    
T  615728 ctttcaaagtgatcgttttttatatatcgcaatggcctattccattttcgataatcgaaaagagtag 615794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1548 - 1578
Target Start/End: Original strand, 20709773 - 20709803
Alignment:
Q  1548 tggcaaaagttatggtgcataaggaaatcct 1578  Q
    |||||||||||||||||||||||||||||||    
T  20709773 tggcaaaagttatggtgcataaggaaatcct 20709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 18298176 - 18298147
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  18298176 ggcaaaagttatggtgcataaggaaatcct 18298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 25192892 - 25192921
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  25192892 ggcaaaagttatggtgcataaggaaatcct 25192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 4e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 573 - 751
Target Start/End: Complemental strand, 9551673 - 9551487
Alignment:
Q  573 ataatcgaaaagagtagttacaaaaggtttttctaatgcgaagagattattatcttgtttaatgttgtttaaagtaaaagtcttatctttttt--cagaa 670  Q
    ||||| ||||||||||||||||| ||||||||  |||| |||||||||| ||||||  | |||||| || |||||||||||||||||||||||  |  ||    
T  9551673 ataatagaaaagagtagttacaagaggttttttcaatgtgaagagattactatcttcctcaatgtttttcaaagtaaaagtcttatctttttttccgaaa 9551574  T
Q  671 aaagataaaaactaag------gtcgtcttcgatggagccgttttgttcttatttagtttcttctgttttcaaatctatttcaacat 751  Q
    ||||| ||| | ||||       |||||| |||||||||| |||||||||| ||||| |||||| |||| || ||||||||||||||    
T  9551573 aaagacaaatagtaagatctccttcgtctacgatggagccattttgttcttgtttagcttcttccgtttccagatctatttcaacat 9551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1078 - 1145
Target Start/End: Original strand, 43053165 - 43053231
Alignment:
Q  1078 aaattggaacgcgtgaatctgagcattgatagacaaaacactatggacacctagccactttaagattt 1145  Q
    |||||| ||||| |||| |||||||| |||| |||||||||||| || ||||||||||||||||||||    
T  43053165 aaattgaaacgcatgaacctgagcatcgata-acaaaacactatagatacctagccactttaagattt 43053231  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 751 - 845
Target Start/End: Complemental strand, 9551470 - 9551374
Alignment:
Q  751 ttgatttcagtcatttccctctcgtcgtattctaagatttcatagt-ataaaaatatgaaatc-gtgttctgtctaaatagtgggccaagataacaa 845  Q
    |||||||||  || ||||||||||| |||||||||||||||||  | ||||||||||| || | |||||| ||||||||||| | | ||||||||||    
T  9551470 ttgatttcatccacttccctctcgttgtattctaagatttcattttaataaaaatatggaagcggtgttccgtctaaatagttgacaaagataacaa 9551374  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1547 - 1578
Target Start/End: Complemental strand, 32987512 - 32987481
Alignment:
Q  1547 ttggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||||    
T  32987512 ttggcaaaagttatggtgcataaggaaatcct 32987481  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 898 - 945
Target Start/End: Original strand, 43053006 - 43053053
Alignment:
Q  898 ttttcttaaccatcaaccaccaccaaacaagaatgttaacattatcaa 945  Q
    ||||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  43053006 ttttcttaaccttcaaccaccaccaaataagaattttaactttatcaa 43053053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1548 - 1578
Target Start/End: Original strand, 1208708 - 1208738
Alignment:
Q  1548 tggcaaaagttatggtgcataaggaaatcct 1578  Q
    |||||||||||||||||||||||||||||||    
T  1208708 tggcaaaagttatggtgcataaggaaatcct 1208738  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 39021975 - 39022004
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  39021975 ggcaaaagttatggtgcataaggaaatcct 39022004  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 42433701 - 42433730
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  42433701 ggcaaaagttatggtgcataaggaaatcct 42433730  T

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Target: chr5 (Bit Score: 55; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 528 - 881
Target Start/End: Complemental strand, 17211864 - 17211479
Alignment:
Q  528 ctttcaaattgatcgttttttatatatcgcaatggcatattca-----cgataatcgaaaagagtagttacaaaaggtttttctaatgcgaagagattat 622  Q
    |||||||| ||||||||||||||||||||||||||| |||||      |||||||  |||||||||||||||| | ||||||| ||||||||||||||||    
T  17211864 ctttcaaagtgatcgttttttatatatcgcaatggcctattccattttcgataataaaaaagagtagttacaagatgtttttccaatgcgaagagattat 17211765  T
Q  623 tatcttgtttaatgttgtttaaagtaaaagtcttatcttttttcagaaaaagataaaaactaaggtc------gtcttcgatggagccgttttgttctta 716  Q
    ||||||| | || |||||  ||||       ||||||||||||| | ||||||||| || |||| ||      |||||||||||| |||||||||||||     
T  17211764 tatcttgctcaaagttgtccaaagc------cttatcttttttcgggaaaagataagaaataagatcttcttcgtcttcgatggaaccgttttgttcttg 17211671  T
Q  717 tttagtttcttctgttt-----------------tcaaat-ctatttcaacattgatttcagtcatttccctctcgtcgtatt------ctaagatttca 792  Q
    |||||||||||| ||||                 |||| | || |||||||||||||||||  | || || |||| |||||||      ||||||||| |    
T  17211670 tttagtttcttccgtttatgaatcaatttcaacatcaatttctctttcaacattgatttcaacctttcccttctcttcgtattataattctaagatttaa 17211571  T
Q  793 t-agtataaaaa-tatgaaatcg-tgttctgtctaaatagtgggccaagataacaagtgaaaaaacagcagatatttgacccacataatttc 881  Q
    | |||||||||| |||| || || ||||||| ||||||||||||| |  ||||||| |||||||||| || |||||||||||||||||||||    
T  17211570 tcagtataaaaaatatggaaccggtgttctgcctaaatagtgggcaacaataacaaatgaaaaaacaacaaatatttgacccacataatttc 17211479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1548 - 1577
Target Start/End: Complemental strand, 23335773 - 23335744
Alignment:
Q  1548 tggcaaaagttatggtgcataaggaaatcc 1577  Q
    ||||||||||||||||||||||||||||||    
T  23335773 tggcaaaagttatggtgcataaggaaatcc 23335744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 28070218 - 28070189
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  28070218 ggcaaaagttatggtgcataaggaaatcct 28070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 743 - 885
Target Start/End: Complemental strand, 49838747 - 49838597
Alignment:
Q  743 tttcaacattgatttcagtcatttccctctcgtcgtattctaagatttcat-------agtataaaaatatgaaatcg-tgttctgtctaaatagtgggc 834  Q
    ||||| |||||||||||  | ||||  |||||||||||| |||||||||||       |||||| ||||||| || || ||||||| |||||||||||||    
T  49838747 tttcaccattgatttcatccttttctttctcgtcgtattataagatttcatccgtataagtatataaatatggaaccggtgttctgcctaaatagtgggc 49838648  T
Q  835 caagataacaagtgaaaaaacagcagatatttgacccacataatttcgcaa 885  Q
     | | |||||| |||||||||| || |||||||||||||||||||||||||    
T  49838647 aacggtaacaaatgaaaaaacaacaaatatttgacccacataatttcgcaa 49838597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 18056784 - 18056813
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  18056784 ggcaaaagttatggtgcataaggaaatcct 18056813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 22348039 - 22348068
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  22348039 ggcaaaagttatggtgcataaggaaatcct 22348068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 23320158 - 23320129
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  23320158 ggcaaaagttatggtgcataaggaaatcct 23320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 571 - 665
Target Start/End: Complemental strand, 9741426 - 9741330
Alignment:
Q  571 cgataatcgaaaagagtagttacaaaaggtttttctaat--gcgaagagattattatcttgtttaatgttgtttaaagtaaaagtcttatctttttt 665  Q
    |||||||| |||||||||||||||| ||||||||  |||  ||  |||||||||| ||||| | |||||||| |||||||||| |||||||||||||    
T  9741426 cgataatcaaaaagagtagttacaagaggttttttcaatatgcagagagattattttcttggtcaatgttgtctaaagtaaaaatcttatctttttt 9741330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 825 - 885
Target Start/End: Original strand, 19139863 - 19139923
Alignment:
Q  825 aatagtgggccaagataacaagtgaaaaaacagcagatatttgacccacataatttcgcaa 885  Q
    |||||||||| | |||||||| |||||||| | || |||||||||||||||||||||||||    
T  19139863 aatagtgggcaaggataacaaatgaaaaaagaacaaatatttgacccacataatttcgcaa 19139923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 2759826 - 2759855
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  2759826 ggcaaaagttatggtgcataaggaaatcct 2759855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 15035040 - 15035011
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  15035040 ggcaaaagttatggtgcataaggaaatcct 15035011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 33346436 - 33346407
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  33346436 ggcaaaagttatggtgcataaggaaatcct 33346407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 34399641 - 34399670
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  34399641 ggcaaaagttatggtgcataaggaaatcct 34399670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1545 - 1578
Target Start/End: Complemental strand, 25301 - 25268
Alignment:
Q  1545 aattggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||||||    
T  25301 aattggcaaaagttatggtgcataaggaaatcct 25268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1548 - 1578
Target Start/End: Original strand, 13612 - 13642
Alignment:
Q  1548 tggcaaaagttatggtgcataaggaaatcct 1578  Q
    |||||||||||||||||||||||||||||||    
T  13612 tggcaaaagttatggtgcataaggaaatcct 13642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 11255 - 11226
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  11255 ggcaaaagttatggtgcataaggaaatcct 11226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 8718101 - 8718130
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  8718101 ggcaaaagttatggtgcataaggaaatcct 8718130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Original strand, 9069988 - 9070017
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  9069988 ggcaaaagttatggtgcataaggaaatcct 9070017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 19385380 - 19385351
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  19385380 ggcaaaagttatggtgcataaggaaatcct 19385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1549 - 1578
Target Start/End: Complemental strand, 51362503 - 51362474
Alignment:
Q  1549 ggcaaaagttatggtgcataaggaaatcct 1578  Q
    ||||||||||||||||||||||||||||||    
T  51362503 ggcaaaagttatggtgcataaggaaatcct 51362474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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