View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9271_low_11 (Length: 365)
Name: NF9271_low_11
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9271_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 4483770 - 4483428
Alignment:
| Q |
19 |
gtaagagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcag |
118 |
Q |
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| T |
4483770 |
gtaagagtaggagcaaacaagtatagagaaaaccaaccaataggaactgctgctcaatctcaagacaatgatgctaaagactataaagaggcaccttcag |
4483671 |
T |
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| Q |
119 |
cacctttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggtttt |
218 |
Q |
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| T |
4483670 |
cgcctttatttgagcatggagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggtttt |
4483571 |
T |
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| Q |
219 |
aactgttatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttat |
318 |
Q |
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| T |
4483570 |
aactgtgatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttat |
4483471 |
T |
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| Q |
319 |
tgtactgctggtatctcaggtaaaattcacatatcgattgttc |
361 |
Q |
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| T |
4483470 |
tgtactgctggtatctcaggtaaaattcacataccaattgttc |
4483428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 341
Target Start/End: Complemental strand, 2650327 - 2650083
Alignment:
| Q |
97 |
gactataaagaggcaccttcagcacctttatttgagcatcgagagttatcatcatggtctttctatagggcagggattgctgagtttgtggctacatttt |
196 |
Q |
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| T |
2650327 |
gactacaaagaagcaccaccagcacctttgtttgagccaggagagttgaagtcatggtcattttatagagctgggattgctgaatttgttgcaactttct |
2650228 |
T |
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| Q |
197 |
tgtttctttatataacggttttaactgttatgggtgtgaataaatccagtaataaatgctcctcagttggtgttcagggaattgcttgggcttttggtgg |
296 |
Q |
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|||| ||||| || || || || ||||| ||||||||||||| || |||||| |||| |||||| |||| ||||||||||||||||||||||| |
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| T |
2650227 |
tgttcctttacatcactgtcttgactgtgatgggtgtgaataggtcaccctctaaatgtgcctctgttggtattcaaggaattgcttgggcttttggtgg |
2650128 |
T |
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| Q |
297 |
aatgatttttgctcttgtttattgtactgctggtatctcaggtaa |
341 |
Q |
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| T |
2650127 |
tatgatctttgctcttgtctattgcactgctggaatttcaggtaa |
2650083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 35230916 - 35230845
Alignment:
| Q |
269 |
ttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggta |
340 |
Q |
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| T |
35230916 |
ttcaaggaattgcttgggcttttggtggcatgatctttgctcttgtttactgtactgctggaatctcaggta |
35230845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 35231037 - 35230952
Alignment:
| Q |
148 |
tcatggtctttctatagggcagggattgctgagtttgtggctacatttttgtttctttatataacggttttaactgttatgggtgt |
233 |
Q |
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| T |
35231037 |
tcatggtctttctacagagctgggatagctgagttcgttgctactttcctttttctttatatcactgttttgactgttatgggtgt |
35230952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 31460824 - 31460746
Alignment:
| Q |
262 |
gttggtgttcagggaattgcttgggcttttggtggaatgatttttgctcttgtttattgtactgctggtatctcaggta |
340 |
Q |
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|||||| |||| |||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||| |
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| T |
31460824 |
gttggtattcaaggaattgcttggtcttttggtggcatgatctttgctcttgtttactgtaccgctggtatctctggta |
31460746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 40208111 - 40208071
Alignment:
| Q |
262 |
gttggtgttcagggaattgcttgggcttttggtggaatgat |
302 |
Q |
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| T |
40208111 |
gttggtgttttgggaattgcttgggcttttggtggtatgat |
40208071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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