View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9271_low_12 (Length: 354)

Name: NF9271_low_12
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9271_low_12
NF9271_low_12
[»] chr7 (13 HSPs)
chr7 (69-186)||(3651452-3651569)
chr7 (224-293)||(3680666-3680735)
chr7 (80-138)||(3702975-3703033)
chr7 (80-135)||(3705909-3705964)
chr7 (80-138)||(3694967-3695024)
chr7 (80-138)||(3685518-3685578)
chr7 (80-137)||(3693200-3693257)
chr7 (22-69)||(3675306-3675353)
chr7 (140-193)||(3700503-3700556)
chr7 (19-65)||(3651126-3651172)
chr7 (19-69)||(3653837-3653887)
chr7 (19-65)||(3706365-3706411)
chr7 (224-293)||(3708000-3708071)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 3651452 - 3651569
Alignment:
Q  69 cttctgctcgaaataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 168  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651452 cttcggctcgaaataagcagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 3651551  T
Q  169 ggttgaaagatggctctg 186  Q
    ||||||||||||||||||    
T  3651552 ggttgaaagatggctctg 3651569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 3680666 - 3680735
Alignment:
Q  224 taattatctaaacaacctctaacttcacccttctgcttattcattagtttcccttctaccaatcttttaa 293  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  3680666 taattatctaaacaacctctaacttccccatcctgcttattgattagtttcccttctaccaatcttttaa 3680735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 3703033 - 3702975
Alignment:
Q  80 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  3703033 aataaacagaatttgagacattattaaaagttacataaactgttgccacaattaatcat 3702975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 3705964 - 3705909
Alignment:
Q  80 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaat 135  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  3705964 aataaacagaagttgagacattattaaaagttacataaactgttgctacaattaat 3705909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 3695024 - 3694967
Alignment:
Q  80 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 138  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3695024 aataaacaga-tttgagacattattaaaagttacataaactgttgctacaattaatcat 3694967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 3685578 - 3685518
Alignment:
Q  80 aataaacagaatttggga--cattattaaaagttacataaactgttgctacaattaatcat 138  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  3685578 aataaacagaatttgagagacattattaaaagttacataaactgttgctacaattaatcat 3685518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 3693257 - 3693200
Alignment:
Q  80 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatca 137  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3693257 aataaacataatttaagacattattaaaagttacataaactgttgctacaattaatca 3693200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 3675353 - 3675306
Alignment:
Q  22 tatagttgaaggaggcttgtttttgtaacttagactatgtactattac 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3675353 tatagttgaaggaggcttgtttttctaacttagactatgtactattac 3675306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 3700556 - 3700503
Alignment:
Q  140 agatgtcttccaaactggggatcacctagggttgaaagatggctctgaaatgag 193  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  3700556 agatgtcttccaaactggggatcacctagggttaaaagatgactctgatatgag 3700503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 3651126 - 3651172
Alignment:
Q  19 tgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 65  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  3651126 tgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3651172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 3653837 - 3653887
Alignment:
Q  19 tgttatagttgaaggaggcttgtttttgtaacttagactatgtactattac 69  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  3653837 tgttatagttgatggaagcttgtttttgtaacttagaccatgtactattac 3653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3706411 - 3706365
Alignment:
Q  19 tgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 65  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  3706411 tgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3706365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 3708000 - 3708071
Alignment:
Q  224 taattatctaaacaacctctaacttcacccttctgcttat--tcattagtttcccttctaccaatcttttaa 293  Q
    |||||||| |||||||||| |||||| ||||||| | |||  | ||||||||||||||||||||||||||||    
T  3708000 taattatcaaaacaacctccaacttcccccttctacctatattgattagtttcccttctaccaatcttttaa 3708071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University