View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9271_low_15 (Length: 289)
Name: NF9271_low_15
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9271_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18840584 - 18840315
Alignment:
| Q |
1 |
atactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctag |
100 |
Q |
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| T |
18840584 |
atactttatgtcagattggtagggggagtttgagaatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctag |
18840485 |
T |
|
| Q |
101 |
tacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattatgca |
200 |
Q |
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| T |
18840484 |
tacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacacatgtctggcttcgactgatctgaattatgca |
18840385 |
T |
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| Q |
201 |
ttataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgc |
270 |
Q |
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| T |
18840384 |
ttataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgatatgggggctccgc |
18840315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18851755 - 18851486
Alignment:
| Q |
1 |
atactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || |
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| T |
18851755 |
atactttatgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggtttttgagactctaggcatctcaatggagcaggcaag |
18851656 |
T |
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| Q |
101 |
tacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattatgca |
200 |
Q |
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| T |
18851655 |
tacatccgactccattccttatattttggaaatagggtagaatgcttatatttataatgccttcaatgcatgtctggcttcgactgatcagaattatgca |
18851556 |
T |
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| Q |
201 |
ttataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgc |
270 |
Q |
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| T |
18851555 |
ttataatttctttttcaggctgaagcgaagtatggatatcttcttgaagctcttgacatgggggctccgc |
18851486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 50012917 - 50012807
Alignment:
| Q |
9 |
tgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctagtacatccg |
108 |
Q |
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|||||||||||| ||||||||||||| || |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
50012917 |
tgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggctagtacatgcg |
50012818 |
T |
|
| Q |
109 |
actccattcct |
119 |
Q |
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||||||||||| |
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| T |
50012817 |
actccattcct |
50012807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 50011651 - 50011582
Alignment:
| Q |
199 |
cattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgc |
270 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50011651 |
cattataatttcttt--caggctgaagctaagtttggatatcttcttgaagctcttgacatgggggctccgc |
50011582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 116 - 270
Target Start/End: Complemental strand, 51296548 - 51296397
Alignment:
| Q |
116 |
tccttatattttggaaatagggtagaatgcttatatttataatgccttcaacgcatgtctggcttcgactgatctgaattatgcattataatttcttttt |
215 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51296548 |
tccttatattttggaaatggcgtagaatgcttatatttat---gccttcaaggcatgcctggcttcgactgatctgaattatgcattataaattcttttt |
51296452 |
T |
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| Q |
216 |
caggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgc |
270 |
Q |
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| T |
51296451 |
caggctgaagcgaagtttggacatcttcttgaagctcttgacatgggggctccgc |
51296397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 51297920 - 51297810
Alignment:
| Q |
1 |
atactttatgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctag |
100 |
Q |
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|
|||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||| |
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| T |
51297920 |
atactttatgtcagattggtggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggctag |
51297821 |
T |
|
| Q |
101 |
tacatccgact |
111 |
Q |
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||||| ||||| |
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| T |
51297820 |
tacatgcgact |
51297810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 44109989 - 44109879
Alignment:
| Q |
9 |
tgtcagattggtcgggggagtttgagtatctataaacgcggcatacaacagaaggtttttgagactttaggcatctcaatggagcaggctagtacatccg |
108 |
Q |
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||||||||||| ||||||||||||| || |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
44109989 |
tgtcagattggaggggggagtttgagaatttataaacgcgacatacaacaaaaggttttggagactgtaggcatctcaatggagcaggctagtacatgcg |
44109890 |
T |
|
| Q |
109 |
actccattcct |
119 |
Q |
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||||||||||| |
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| T |
44109889 |
actccattcct |
44109879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 44108701 - 44108632
Alignment:
| Q |
199 |
cattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctcc |
268 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
44108701 |
cattataatttctttttcaggctgaagctaagtttggatatcttcttgaagctctcgacatgggggctcc |
44108632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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