View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9271_low_18 (Length: 270)
Name: NF9271_low_18
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9271_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 3437494 - 3437736
Alignment:
| Q |
18 |
aatagtttagagatttttnnnnnnngcataagttgttttgtgttcgtttactacaaaaatgttaatattgttatgctggacacaagggacctcccagctg |
117 |
Q |
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| T |
3437494 |
aatagtttagagatttttaaaaaaagcataagttgttttgtgttcgtttactacaaaaatgttaatattgttatgctggacacaagggacctcgcagctg |
3437593 |
T |
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| Q |
118 |
agcgtgtgaatttaagacggtgtttgtcacttcgtctctcatttaccccgaaatatgcgaatagccaaaaagaaaacatgacattgagcaacttggtttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437594 |
agcgtgtgaatttaagacggtgtttgtcacttcgtctctcatttaccccgaaatatgcgaatagccaaaaagaaaacatgacattgagcaacttggtttt |
3437693 |
T |
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| Q |
218 |
tctgttaacttgtgtctaatttactatatctaattagtctctg |
260 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3437694 |
tctgttaacttgtatctaatttactatatctaattagtctctg |
3437736 |
T |
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