View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9271_low_3 (Length: 728)

Name: NF9271_low_3
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9271_low_3
NF9271_low_3
[»] chr1 (13 HSPs)
chr1 (43-334)||(1379105-1379398)
chr1 (373-718)||(1379418-1379774)
chr1 (122-285)||(7312937-7313102)
chr1 (216-311)||(7036903-7036999)
chr1 (323-394)||(35492062-35492133)
chr1 (329-399)||(1609536-1609606)
chr1 (332-398)||(8981792-8981858)
chr1 (351-398)||(30996455-30996502)
chr1 (321-358)||(43949209-43949246)
chr1 (348-398)||(27081707-27081757)
chr1 (332-398)||(30717264-30717330)
chr1 (321-358)||(18436288-18436325)
chr1 (329-358)||(51295701-51295730)
[»] chr5 (4 HSPs)
chr5 (166-322)||(29377393-29377553)
chr5 (533-717)||(6605145-6605344)
chr5 (332-398)||(27990171-27990237)
chr5 (324-383)||(33764398-33764457)
[»] chr2 (9 HSPs)
chr2 (641-715)||(3082093-3082167)
chr2 (563-632)||(3081997-3082066)
chr2 (323-394)||(6607944-6608014)
chr2 (323-398)||(35319345-35319420)
chr2 (361-398)||(11146994-11147031)
chr2 (344-398)||(17239673-17239727)
chr2 (332-398)||(30353929-30353995)
chr2 (329-398)||(14395150-14395219)
chr2 (329-398)||(25985110-25985178)
[»] chr6 (3 HSPs)
chr6 (329-392)||(22398330-22398393)
chr6 (323-358)||(3159570-3159605)
chr6 (361-398)||(34805967-34806004)
[»] scaffold0008 (1 HSPs)
scaffold0008 (332-396)||(240662-240726)
[»] chr4 (15 HSPs)
chr4 (322-398)||(33859965-33860041)
chr4 (323-398)||(46826698-46826773)
chr4 (333-398)||(33653078-33653143)
chr4 (332-398)||(19351329-19351395)
chr4 (333-398)||(22129364-22129429)
chr4 (344-395)||(15633189-15633240)
chr4 (351-398)||(48801946-48801993)
chr4 (344-398)||(28703723-28703777)
chr4 (353-398)||(39267565-39267610)
chr4 (366-398)||(46444260-46444292)
chr4 (360-398)||(1846239-1846277)
chr4 (332-398)||(12619492-12619558)
chr4 (332-398)||(16411676-16411742)
chr4 (320-358)||(30617537-30617575)
chr4 (328-388)||(25525715-25525776)
[»] chr3 (2 HSPs)
chr3 (329-398)||(49350842-49350911)
chr3 (313-358)||(43310600-43310645)
[»] chr8 (8 HSPs)
chr8 (336-400)||(13526070-13526134)
chr8 (336-400)||(13615605-13615669)
chr8 (323-398)||(28140739-28140813)
chr8 (332-398)||(41068317-41068382)
chr8 (329-398)||(17102195-17102264)
chr8 (322-358)||(13327658-13327694)
chr8 (323-398)||(7107433-7107508)
chr8 (360-398)||(8768909-8768947)
[»] chr7 (4 HSPs)
chr7 (323-398)||(25005468-25005543)
chr7 (322-386)||(37492706-37492770)
chr7 (323-358)||(45837943-45837978)
chr7 (320-358)||(32786925-32786963)
[»] scaffold1372 (1 HSPs)
scaffold1372 (323-372)||(110-159)
[»] scaffold1308 (1 HSPs)
scaffold1308 (323-372)||(1416-1465)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-148; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 43 - 334
Target Start/End: Original strand, 1379105 - 1379398
Alignment:
Q  43 caacaagtcaagaacactttaaaaagtcaaaatgtcacactagtacttgttgcacatgccaatcaattccagagcctgagcgcatacgtcagggctctca 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1379105 caacaagtcaagaacactttaaaaagtcaaaatgtcacactagtactagttgcacatgccaatcaattccagagtctgagcgcatacgtcagggctctca 1379204  T
Q  143 agacaacctagccccgctcctgcgtggtgcctcctccttttctaagtatcttccgctcatccaacccaattctttcatttcctacacaaataaaatacaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1379205 agacaacctagccccgctcctgcgtggtgcctcctccttttctaagtatcctccgctcatccaacccaattctttcatttcctacacaaataaaatacaa 1379304  T
Q  243 acagttaagtattt--aaaagtaataattaagttaaatcacatgagaatagaccaatttcaactcactcatcataatttaatgggtcgtgctaa 334  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1379305 acagttaagtatttagaaaagtaataattaagttaaatcacatgagaatagaccaatttcaactcactcatcataatttaatgggtcatgctaa 1379398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 373 - 718
Target Start/End: Original strand, 1379418 - 1379774
Alignment:
Q  373 gataaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctccctttagaatacaataaattcacccataatttcaaagaagcactttc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1379418 gataaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctcccttcagaatacaataaattcacccataatttcaaagaagcactttc 1379517  T
Q  473 catattagtttcaaaatgtggggtttgnnnnnnnncacaaattagttgtttcttttcccgtgtagcaaaatgacattgttgctttaatttgtttcattct 572  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||     |||||||||||||    
T  1379518 catatgagtttcaaaatgtggggtttg-tttttttcacaaattagttgtttcttttccggtgtagcaaaatgacattgttgc-----tttgtttcattct 1379611  T
Q  573 tgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggcta------------------ttgatttgaagaggagcatcgacgtctcata 654  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||    
T  1379612 tgagaaatgtaatggtttgta-ttcatgttggctgcttatttgattggctattgatttgatttgcaggtttgatttgaagaggagcatcgacgtctcata 1379710  T
Q  655 catataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccat 718  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1379711 aatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccat 1379774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 7312937 - 7313102
Alignment:
Q  122 gcgcatacgtcagggctctcaagacaacctagccccgctcctgcgtggtgcctcctccttttctaagtatcttccgctcatccaacccaattctttcatt 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||  ||||||||||| ||||||||||||||| ||||||||||||    
T  7312937 gcgcatacgtcagggctctcaagacaacctagctccgctcctgaatggtacctcctccccttctaagtatcctccgctcatccaaccgaattctttcatt 7313036  T
Q  222 tcctacacaaataaaatacaaacagttaagtattt--aaaagtaataattaagttaaatcacatga 285  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  7313037 tcctacacaaataaaatacaaacagttaaatatttagaaaagtaataattaagttaaatcacatga 7313102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 7036903 - 7036999
Alignment:
Q  216 ttcatttcctacacaaataaaatacaaacagttaagtattt--aaaagtaataattaagttaaatcacatgagaatagaccaatttcaactcactcat 311  Q
    ||||||||||||||||||||||||||| ||| |||||||||  ||||||| ||| |||| ||| ||| ||||||||||| ||||||||| ||| ||||    
T  7036903 ttcatttcctacacaaataaaatacaaccag-taagtatttagaaaagtagtaactaagctaagtcaaatgagaatagagcaatttcaaatcattcat 7036999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 394
Target Start/End: Complemental strand, 35492133 - 35492062
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaaca 394  Q
    ||||| |||||| |||||| || || |||||||||| ||| |||||||||| ||||||||||||||||||||    
T  35492133 gggtcttgctaagttgtgcactgagagcacatgttaaggactccataaatggtaaatatttattacaaaaca 35492062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 1609606 - 1609536
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaaa 399  Q
    |||||||||||||| || | ||| |||||| |||||||||||||  |||||||||||||||||||| ||||    
T  1609606 tgctaacttgtgcctttggagcatatgttaaggattccataaatagtaaatatttattacaaaacactaaa 1609536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 8981858 - 8981792
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||| |||| |||||||||||  |||| |||||||| |||||||| |||||||||||||||    
T  8981858 taacttgtgctcttaaggcacatgttaaagatttcataaatggtaaatattcattacaaaacattaa 8981792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 30996502 - 30996455
Alignment:
Q  351 acatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  30996502 acatattatggatttcataaatgaaaaatatttattacaaaacattaa 30996455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 43949246 - 43949209
Alignment:
Q  321 atgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    |||||| |||||||||||||||||||||||||||||||    
T  43949246 atgggtagtgctaacttgtgcccttagggcacatgtta 43949209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 27081757 - 27081707
Alignment:
Q  348 ggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||  ||||| ||||||  ||||||||||||||||||||||||    
T  27081757 ggcacatgttaaagattctataaatagtaaatatttattacaaaacattaa 27081707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 30717264 - 30717330
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||| | |||||| |||||||| |||||  |||||   ||||||||||||||||||||||||    
T  30717264 taacttgtgtctttagggtacatgttaaggattttataaacagtaaatatttattacaaaacattaa 30717330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 18436288 - 18436325
Alignment:
Q  321 atgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  18436288 atgggtagtgttaacttgtgcccttagggcacatgtta 18436325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 51295701 - 51295730
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgtta 358  Q
    ||||||||||||||||||||||||||||||    
T  51295701 tgctaacttgtgcccttagggcacatgtta 51295730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 166 - 322
Target Start/End: Original strand, 29377393 - 29377553
Alignment:
Q  166 gtggtgcctcctccttttctaagtatcttccgctcatccaacccaattctttcatttcctacacaaataaaa--tacaaacagttaagtattta--aaag 261  Q
    ||||| ||||||| | | |||| |||| ||| ||| |||||||  ||||||| |||||||||||||||||||  |||||||| |||||||||||  ||||    
T  29377393 gtggtacctcctcgtctcctaaatatcctccactcttccaaccagattctttgatttcctacacaaataaaaaatacaaacaattaagtatttagaaaag 29377492  T
Q  262 taataattaagttaaatcacatgagaatagaccaatttcaactcactcatcataatttaat 322  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  29377493 taataaataagttaaatcagatgagaatagaccaatttcaaatcactcatcataatttaat 29377553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 533 - 717
Target Start/End: Original strand, 6605145 - 6605344
Alignment:
Q  533 tgtagcaaaatgacattgttgctttaatttgtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttg- 631  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||     
T  6605145 tgtagcaaaatgacattgttgcttt-----gtttcattcttgagaaatgtaatggttcctatttcatattggctacttatttgattggctattgatttgg 6605239  T
Q  632 -----------------aagaggagcatcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgt--tatgtttgat 712  Q
                     |||||||  ||  || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||  ||||||||||    
T  6605240 tatgcgagtttgattggaagaggatgattaacatctcatacatataatgaagcttcaaaatgacccgtttttgaacctatatgtatgttatatgtttgat 6605339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 27990237 - 27990171
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||  |||||| |||||||||  ||||||||||||  || |||||||||||||||||||||    
T  27990237 taacttgtgttcttaggacacatgttaatgattccataaatagtagatatttattacaaaacattaa 27990171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 383
Target Start/End: Original strand, 33764398 - 33764457
Alignment:
Q  324 ggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatattt 383  Q
    |||| ||||||||| ||  | |||| ||||||||| ||||||||||||||||||||||||    
T  33764398 ggtcctgctaacttatgttcataggacacatgttaaggattccataaatgataaatattt 33764457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 641 - 715
Target Start/End: Original strand, 3082093 - 3082167
Alignment:
Q  641 atcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtc 715  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  3082093 atcgacatctcatacatataatgaagcttcaaaatgaccagctttttaacctatatgtatgttatgtttgatgtc 3082167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 632
Target Start/End: Original strand, 3081997 - 3082066
Alignment:
Q  563 gtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttga 632  Q
    |||||||||||||||||||| ||||||   ||||||| |||||| ||||||||||||| |||||||||||    
T  3081997 gtttcattcttgagaaatgtgatggttacaatttcatattggctacttatttgattggttattgatttga 3082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 394
Target Start/End: Complemental strand, 6608014 - 6607944
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaaca 394  Q
    ||||| |||||||||||| ||||||| || |||||| |||||||||||||| | ||||||||||||||||||    
T  6608014 gggtcatgctaacttgtgtccttagg-catatgttaaggattccataaatggtgaatatttattacaaaaca 6607944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 35319420 - 35319345
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| |||||||||||| | ||| |||| |||||| |||||| ||||||  ||||||||||||||||||||||||    
T  35319420 gggtcatgctaacttgtgtcattatggcatatgttaaggattctataaatagtaaatatttattacaaaacattaa 35319345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 11147031 - 11146994
Alignment:
Q  361 gattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11147031 gattccataaatgataaatatttattacaaaacattaa 11146994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 17239673 - 17239727
Alignment:
Q  344 ttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||||||   |||||||||||| |||||||||||||||||| |||||    
T  17239673 ttagggcacatgttaaacattccataaatggtaaatatttattacaaaatattaa 17239727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 30353929 - 30353995
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||| || |||||||| |||||||| |||||  || ||||||||||||||||||||||| |||||    
T  30353929 taacttctgtccttagggtacatgttaaggattttatcaatgataaatatttattacaaaatattaa 30353995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 14395219 - 14395150
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||||  ||| ||||||||||| |||||  ||||||| ||||||||||||| |||| |||||    
T  14395219 tgctaacttgtgcatttatggcacatgttaaggattttataaatggtaaatatttattataaaatattaa 14395150  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 25985110 - 25985178
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||| | ||||  ||||||||| | |||||||||||| ||||||||||||||||||| ||||    
T  25985110 tgctaacttgtgtctttaga-cacatgttaagaattccataaatggtaaatatttattacaaaaccttaa 25985178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 22398330 - 22398393
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaa 392  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  22398330 tgctaacttgtgcccttagagcacatgttaaagattccataaatgataaatatttattacaaaa 22398393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 358
Target Start/End: Original strand, 3159570 - 3159605
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    |||| |||||||||||||||||||||||||||||||    
T  3159570 gggtggtgctaacttgtgcccttagggcacatgtta 3159605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 34806004 - 34805967
Alignment:
Q  361 gattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  34806004 gattctataaatgataaatatttactacaaaacattaa 34805967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 240726 - 240662
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacatt 396  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  240726 taacttgtgcccttatgacacatgttaaggattccataaatgataaatatttattataaaacatt 240662  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 33860041 - 33859965
Alignment:
Q  322 tgggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||| ||||||||||| ||||||  |||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  33860041 tgggtcatgctaacttgtacccttatagcacatgttaaggattctatatatgataaatatttattacaaaacattaa 33859965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 46826773 - 46826698
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| || ||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  46826773 gggtcatgttaacttgtgtccttaaggcacatgttaaggattccataaatggtaaatatttattaaaaaacattaa 46826698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 33653078 - 33653143
Alignment:
Q  333 aacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||| |||||||||||| ||| ||||| |||||||||||||| ||||||| ||||||||||    
T  33653078 aacttgtgctcttagggcacatattaaggatttcataaatgataaatttttattataaaacattaa 33653143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 19351395 - 19351329
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||| | ||||||||||||||||  ||| ||||||||| |||||||||||||||||| |||||    
T  19351395 taacttgtactcttagggcacatgttaatgataccataaatggtaaatatttattacaaaatattaa 19351329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 22129364 - 22129429
Alignment:
Q  333 aacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||||| ||||||||||| |||||||||||||   | ||||||||| |||||||||||    
T  22129364 aacttgtgcccttaaggcacatgttaaggattccataaattcaagatatttatttcaaaacattaa 22129429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 15633189 - 15633240
Alignment:
Q  344 ttagggcacatgttatggattccataaatgataaatatttattacaaaacat 395  Q
    |||||||| |||||| | |||||||||||| |||||||||||||||||||||    
T  15633189 ttagggcatatgttaagaattccataaatggtaaatatttattacaaaacat 15633240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 48801946 - 48801993
Alignment:
Q  351 acatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||    
T  48801946 acatgttaaggattccataaatgataaatatttattaaaaaatattaa 48801993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 28703777 - 28703723
Alignment:
Q  344 ttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||    
T  28703777 ttagggcatatgttaaggatttcatatatggtaaatatttattacaaaacattaa 28703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 39267565 - 39267610
Alignment:
Q  353 atgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||    
T  39267565 atgttaaggattttataaatgataaatatttattacaaaacattaa 39267610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 46444292 - 46444260
Alignment:
Q  366 cataaatgataaatatttattacaaaacattaa 398  Q
    |||||||||||||||||||||||||||||||||    
T  46444292 cataaatgataaatatttattacaaaacattaa 46444260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 1846277 - 1846239
Alignment:
Q  360 ggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  1846277 ggatttcataaatggtaaatatttattacaaaacattaa 1846239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 12619558 - 12619492
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||| |||||  ||| || ||| ||||| ||||| || ||||||||||||||||||||||||    
T  12619558 taacttgtgtccttaaagcatatattaaggatttcataattggtaaatatttattacaaaacattaa 12619492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 16411676 - 16411742
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||||| | ||||| |||||||  |||||||||||||| || ||||||||  ||||||||||    
T  16411676 taacttgtgccataagggcgcatgttaaagattccataaatgacaagtatttattgtaaaacattaa 16411742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 30617537 - 30617575
Alignment:
Q  320 aatgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  30617537 aatgggtcatgctaacttgtgcccttagggcacaagtta 30617575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 25525715 - 25525776
Alignment:
Q  328 gtgctaacttgtgccctt-agggcacatgttatggattccataaatgataaatatttattac 388  Q
    ||||||||||||||| || | | || |||||| ||||||| |||||||||||||||||||||    
T  25525715 gtgctaacttgtgccttttaagacatatgttaaggattccgtaaatgataaatatttattac 25525776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 49350911 - 49350842
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||||| ||||||||| | |||||| |||||||||||||| ||||||||||||||||||| ||||    
T  49350911 tgctaacttgtacccttagggtatatgttaaggattccataaatggtaaatatttattacaaaactttaa 49350842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 43310645 - 43310600
Alignment:
Q  313 ataatttaatgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||    
T  43310645 ataatttaaagggtcatgctaacttgtgccctcagggcacatgtta 43310600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 13526134 - 13526070
Alignment:
Q  336 ttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaaat 400  Q
    ||||||||||| ||||||||||| |||||||||||||  ||||||| ||||||||||||||||||    
T  13526134 ttgtgcccttaaggcacatgttaaggattccataaatagtaaatatctattacaaaacattaaat 13526070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 13615669 - 13615605
Alignment:
Q  336 ttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaaat 400  Q
    ||||||||||| ||||||||||| |||||||||||||  ||||||| ||||||||||||||||||    
T  13615669 ttgtgcccttaaggcacatgttaaggattccataaatagtaaatatctattacaaaacattaaat 13615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 28140813 - 28140739
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| |||||||||||| | ||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||    
T  28140813 gggtcctgctaacttgtgtctttaggacacatgttaaggattccataaat-agtaatatttattacaaaacattaa 28140739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 41068382 - 41068317
Alignment:
Q  332 taacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||||||||  | ||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  41068382 taacttgtgcccttgtgacacgtgtta-ggattccataaatgataaatatttatcacaaaacattaa 41068317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 17102264 - 17102195
Alignment:
Q  329 tgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||||||||||  | |||  ||||||||| |||||||||||||| ||||||||||||| |||| |||||    
T  17102264 tgctaacttgtgttcatagaacacatgttaaggattccataaatggtaaatatttattagaaaatattaa 17102195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 13327658 - 13327694
Alignment:
Q  322 tgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13327658 tgggtcgtgctaacttgtgcccttaaggcacatgtta 13327694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 7107433 - 7107508
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| |||||||||||||||||| ||||||||||| | ||||||  |||| |||| || |||| ||||| |||||    
T  7107433 gggtcatgctaacttgtgcccttatggcacatgttaagcattccactaatggtaaaaatctattgcaaaaaattaa 7107508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 8768947 - 8768909
Alignment:
Q  360 ggattccataaatgataaatatttattacaaaacattaa 398  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  8768947 ggattcaataaatggtaaatatttattacaaaacattaa 8768909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 25005468 - 25005543
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttattacaaaacattaa 398  Q
    ||||| || ||||||||||| ||| |||||||||||  ||||| ||||||  ||||||||||||||||||||||||    
T  25005468 gggtcatgttaacttgtgcctttaaggcacatgttaaagattctataaattttaaatatttattacaaaacattaa 25005543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 37492770 - 37492706
Alignment:
Q  322 tgggtcgtgctaacttgtgcccttagggcacatgttatggattccataaatgataaatatttatt 386  Q
    |||||| |||||||||||| | ||||| ||||||||| |||||  ||||||||||||||||||||    
T  37492770 tgggtcatgctaacttgtgtctttaggacacatgttaaggattttataaatgataaatatttatt 37492706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 358
Target Start/End: Complemental strand, 45837978 - 45837943
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    ||||| ||||||||||||||||||||||||||||||    
T  45837978 gggtcatgctaacttgtgcccttagggcacatgtta 45837943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 32786963 - 32786925
Alignment:
Q  320 aatgggtcgtgctaacttgtgcccttagggcacatgtta 358  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  32786963 aatgggtcatgctaacttgtgccctaagggcacatgtta 32786925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 159 - 110
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaat 372  Q
    ||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  159 gggtcgtgctaacttatgcccttagggtacatgttaaggaatccaaaaat 110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1308 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 1465 - 1416
Alignment:
Q  323 gggtcgtgctaacttgtgcccttagggcacatgttatggattccataaat 372  Q
    ||||||||||||||| ||||||||||| |||||||| ||| |||| ||||    
T  1465 gggtcgtgctaacttatgcccttagggtacatgttaaggaatccaaaaat 1416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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