View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9271_low_4 (Length: 580)
Name: NF9271_low_4
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9271_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 40573576 - 40574137
Alignment:
| Q |
18 |
catattgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgat |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573576 |
catattgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgac |
40573675 |
T |
|
| Q |
118 |
gttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttataacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573676 |
gttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttaaaacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcat |
40573775 |
T |
|
| Q |
218 |
taattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattaatattcaggattagatgttaatatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40573776 |
taattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattaatattcaggattagatgttaatatat |
40573875 |
T |
|
| Q |
318 |
cttcagtataatagtgttgtcgtatatgttgtatttccccctgtattagtccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
40573876 |
cttcagtataatagtgttgtcgtatatgttgtatttccccctgtattagtccattggacatgatatttatatttgtctcgatgtaaatatgggatttcca |
40573975 |
T |
|
| Q |
418 |
agtgaacttgtgttatgctttggtaggtttctccaactatgttgctaaatggcttttcactctcaaaacaacattaattccacctttacaagcatatgag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40573976 |
agtgaacttgtgttatgctttggtaggtttctccaactatgttgctaaatggcttttcactctcaaaacaacattaattccacctttacaagcatacgag |
40574075 |
T |
|
| Q |
518 |
ttcaataatatttattttcgttcttctatgacaaatttcttcatatgcataaattgttacaa |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40574076 |
ttcaataatatttattttcgttcttctatgacaaatttcttcatatgcataaattgttacaa |
40574137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 40568977 - 40569407
Alignment:
| Q |
20 |
tattgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgt |
119 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||| || |
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|
| T |
40568977 |
tattgtagaacggtgtttaagggtgaagggtgaggacagacccaccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgt |
40569076 |
T |
|
| Q |
120 |
tggggaagcgacaatttatcttcagaagaggctgaaaacttgcttataacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
40569077 |
tggggaagcgacaatttatcttcagaagagactgaaaagttgcttaaaacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcatta |
40569176 |
T |
|
| Q |
220 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatattaatattcaggattagatgttaatatatct |
319 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||| |
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|
| T |
40569177 |
attcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttgatattagtattcaggattagatgtgaatctatct |
40569276 |
T |
|
| Q |
320 |
tcagtataatagtgttgtcgtatatgttgtatttccccctgtattagtccattggacatgatatttatatttgtgtcgatgtaaatatgggatttgcaag |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||||| |||||||| |||||||||| || |||||||||| |
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|
| T |
40569277 |
tcattataatagtgttgtcgtatatgttgtattttcccctgtattggtctattgcacatgatattcatatttgtatcgatgtaaaaataggatttgcaat |
40569376 |
T |
|
| Q |
420 |
tgaacttgtgttatgctttggtaggtttctc |
450 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
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|
| T |
40569377 |
tgagtttgtgttatgctttggtaggtttctc |
40569407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 40580034 - 40580369
Alignment:
| Q |
19 |
atattgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
40580034 |
atattgcagaacggtgtttaagggtgaagggagaggacagaccaactatgaaagaagtggcaatggaacttgagggaatattagttattgaagagttccg |
40580133 |
T |
|
| Q |
119 |
ttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttataacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcatt |
218 |
Q |
| |
|
||||||||| ||| |||| |||||||||||| ||||||||||||| | ||||||| || | ||||| || |||||| |||||||||||| ||| |
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|
| T |
40580134 |
ttggggaagtgactatttgtcttcagaagagactgaaaacttgctcaaaacagcagaatccgtaaaaaatgttcaagatggtattggtggaagtgatatt |
40580233 |
T |
|
| Q |
219 |
aattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgatat---taatattcaggattagatgttaatat |
315 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||| || |||||||||||||||||| | ||||| ||||| ||| | ||| |||||||| | |
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|
| T |
40580234 |
aattcttctggttcatatagcttaaaccagatttcgat---atcgattggtggaagatgattgatggatattaataatactcatggttatatgttaatct |
40580330 |
T |
|
| Q |
316 |
atcttcagtataatagtgttgtcgtatatgttgtatttc |
354 |
Q |
| |
|
||||||| |||||| ||||||| |||| || |||||||| |
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|
| T |
40580331 |
atcttcactataattgtgttgtagtatttgatgtatttc |
40580369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 40598486 - 40598578
Alignment:
| Q |
21 |
attgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagag |
113 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
40598486 |
attgcagaaaggtgtttaagggtgaagagtgaggaaagaccaaccatgaaagaagtggcaatgggactagagggaatattagttactgaagag |
40598578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 40591884 - 40591976
Alignment:
| Q |
21 |
attgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagag |
113 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||| || |||||||||||| |||||||| |
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|
| T |
40591884 |
attgcagaaaggtgtttaagggtgaacagtgaggaaagaccatccatgaaagaagtggcaatggaactggaaggaatattagttattgaagag |
40591976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 486 - 572
Target Start/End: Original strand, 40569411 - 40569497
Alignment:
| Q |
486 |
caacattaattccacctttacaagcatatgagttcaataatatttattttcgttcttctatgacaaatttcttcatatgcataaatt |
572 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | |||| |||||||||||||| ||||| | ||||||||||||||||||| ||||||| |
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|
| T |
40569411 |
caacattagttccacctttagaagcatattatttcagtaatatttattttcattcttatgtgacaaatttcttcatatgaataaatt |
40569497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 40602534 - 40602627
Alignment:
| Q |
21 |
attgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagc |
114 |
Q |
| |
|
||||||||| ||||||||| | |||| | ||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
40602534 |
attgcagaaaggtgtttaaagatgaacagtgaggaaagaccgaccatgaaagaagtggcagtggaactagagggaatattagttattgaagagc |
40602627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 40602723 - 40602775
Alignment:
| Q |
236 |
tagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgata |
288 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
40602723 |
tagcttaaagcagattaggatatcattgattggtggaatatgattagttgata |
40602775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 40582217 - 40582288
Alignment:
| Q |
202 |
ttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaa |
273 |
Q |
| |
|
|||| |||||||| |||||||||| ||| || ||||| || |||| ||||| ||||||||||||||||||| |
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|
| T |
40582217 |
ttggcggaagtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattggtggaa |
40582288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 2014759 - 2014652
Alignment:
| Q |
20 |
tattgcagaacggtgtttaagggtgaagggcgaggacagaccaaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgatgt |
119 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||| ||||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||| || |
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|
| T |
2014759 |
tattgcagaaaggtgtttacgggtgaagggtgaggaaagacccaccatgaaagaagtggcagcggaactggagggaatattagttattgaagagcaccgt |
2014660 |
T |
|
| Q |
120 |
tggggaag |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
2014659 |
tggggaag |
2014652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 2014571 - 2014505
Alignment:
| Q |
220 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
286 |
Q |
| |
|
|||||| |||||| || ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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|
| T |
2014571 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
2014505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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