View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9271_low_6 (Length: 555)
Name: NF9271_low_6
Description: NF9271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9271_low_6 |
 | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Original strand, 37535576 - 37536085
Alignment:
| Q |
16 |
gacatcaaacaagagacatctacacatgtccttttttaatatttnnnnnnnncttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37535576 |
gacatcaaacaagagacgtctacacatgtccttttttaatatttaaaaaaaacttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
37535675 |
T |
|
| Q |
116 |
atattaactttt--ttcacgcgcatggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaa |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37535676 |
atattaacttttttttcacgcgcatggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaa |
37535775 |
T |
|
| Q |
214 |
ggttgacagacaagtctgttgtaccataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttg |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37535776 |
ggttgacagacaaatctgttgtaccataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttg |
37535875 |
T |
|
| Q |
314 |
cacaccatctctagttgtttcatcaatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37535876 |
cacaccatctctagttgtttcatcaatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaat |
37535975 |
T |
|
| Q |
414 |
tcaatagttataaatattgtttcttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaa |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37535976 |
tcaatagttataaatattgtttcttagtttttgctctgtttctattgtaaatattgtttggactttgctggttctttcttagtacatcttgtgctaggaa |
37536075 |
T |
|
| Q |
514 |
agactcattg |
523 |
Q |
| |
|
|||||||||| |
|
|
| T |
37536076 |
agactcattg |
37536085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Original strand, 37720518 - 37721054
Alignment:
| Q |
16 |
gacatcaaacaagagacatctacacatgtccttttttaatatttnnnnnnnncttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37720518 |
gacatcaaacaagagacgtctacacatgtccttttttaatatttaaaaaaaacttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
37720617 |
T |
|
| Q |
116 |
atattaacttttttcacgcgcatggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37720618 |
atattaacttttttcacgcgcatggctagtagacatgtcatatatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaagg |
37720717 |
T |
|
| Q |
216 |
ttgacagacaagtctgttgtaccataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37720718 |
ttgacagacaagtctgttgtaccataaactcgaccacgggtacgacccc-tgcagattcggtccacaacccaagttttgttcctccatcaacctcttgca |
37720816 |
T |
|
| Q |
316 |
caccatctctagttgtttcatcaatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattc |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37720817 |
caccatctccagttgtttcatcaatctgggcgtgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattc |
37720916 |
T |
|
| Q |
416 |
aatagttataaatattgtttcttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaag |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || | |
|
|
| T |
37720917 |
aatagttataaatattgtttcttagtttttgctctgtttctattgtaaatattgtttggactttgctggttctttcttagtacattttgtgttagaaagg |
37721016 |
T |
|
| Q |
516 |
actcattgatttcgtaatatattctattttaacttctt |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
37721017 |
actcattgatttcgtaatatattccattttagcttctt |
37721054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Original strand, 37596825 - 37597361
Alignment:
| Q |
16 |
gacatcaaacaagagacatctacacatgtccttttttaatatttnnnnnnnncttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37596825 |
gacatcaaacaagagacgtctacacatgttcttttttaatatttaaaaaaaacttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
37596924 |
T |
|
| Q |
116 |
atattaacttttttcacgcgcatggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37596925 |
atattaacttttttcacgcgcatggctagtagacatgtcatatatggaactatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaagg |
37597024 |
T |
|
| Q |
216 |
ttgacagacaagtctgttgtaccataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37597025 |
ttgacagacaagtctgttgtaccataaactcgaccacggttacgacccc-tgcagattcggtccacaacccaagttttgttcctccatcaacctcttgca |
37597123 |
T |
|
| Q |
316 |
caccatctctagttgtttcatcaatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattc |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37597124 |
caccatctcgagttgtttcatcaatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattc |
37597223 |
T |
|
| Q |
416 |
aatagttataaatattgtttcttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaag |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || | |
|
|
| T |
37597224 |
aatagttataaatattgtttcttaatttttgctctgtttctattgtaaatattgtttggactttgctggttctttcttagtacattttgtgttagaaatg |
37597323 |
T |
|
| Q |
516 |
actcattgatttcgtaatatattctattttaacttctt |
553 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
37597324 |
actcattgatttcgtaatatatttcattttagcttctt |
37597361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 138 - 555
Target Start/End: Original strand, 37826501 - 37826918
Alignment:
| Q |
138 |
tggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826501 |
tggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtac |
37826600 |
T |
|
| Q |
238 |
cataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatc |
337 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826601 |
cataaactcgaccacgggtatgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatc |
37826700 |
T |
|
| Q |
338 |
aatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattcaatagttataaatattgtttct |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826701 |
aatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattcaatagttataaatattgtttct |
37826800 |
T |
|
| Q |
438 |
tagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatat |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37826801 |
tagtttttgctctgtttctattgtaaatattgtttggactttgctggttctttcttagtacatcttgtgctaggaaagactcattaatttcgtaatatat |
37826900 |
T |
|
| Q |
538 |
tctattttaacttcttca |
555 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
37826901 |
tccattttagcttcttca |
37826918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 138 - 553
Target Start/End: Original strand, 37644825 - 37645241
Alignment:
| Q |
138 |
tggctagtagacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtac |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
37644825 |
tggctagtagacatctcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccatgtcaaaggttgacagacaagtctgttgtac |
37644924 |
T |
|
| Q |
238 |
cataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
37644925 |
cataaactcgaccacgggtacgaccccctgcagactcggtccacaacccaagttttattcctccatcaacctcttgcacaccattttcagttgtttcatc |
37645024 |
T |
|
| Q |
338 |
aatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattcaatagttataaatattgtttct |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645025 |
aatctgggcttgtactgtactcaaaaggaacgaactatgaagtagttaaattatagtcttaaccattgatttcaattcaatagttataaatattgtttct |
37645124 |
T |
|
| Q |
438 |
tag-tttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645125 |
tagttttttgctctgtttctattataaatattgtttggattttgctggttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
37645224 |
T |
|
| Q |
537 |
ttctattttaacttctt |
553 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
37645225 |
ttccattttaacttctt |
37645241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 10245706 - 10245918
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
10245706 |
agacatctcatacatggaaccatgatgatctcgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgctgtaccataaact |
10245805 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
10245806 |
cgaccacgagtacgaccccctgcagactcggtccacaacctaagctttgttcctccatcaacctcttgcacaccatctccagttgtttcatcaatttggg |
10245905 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10245906 |
cttgtactgtact |
10245918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 37826330 - 37826451
Alignment:
| Q |
16 |
gacatcaaacaagagacatctacacatgtccttttttaatatttnnnnnnnncttttttaaaatggtggagaattattgtaacacaaaaattaagttgtg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37826330 |
gacatcaaacaagagacgtctacacatgtccttttttaatattaaaaaaaaacttttttaaaatggaggagaattattgtaacacaaaaattaagttgtg |
37826429 |
T |
|
| Q |
116 |
atattaacttttttcacgcgca |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37826430 |
atattaacttttttcacgcgca |
37826451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 12831474 - 12831375
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12831474 |
ttagtttttgctctgtttttattgtaaatattgtttggactttgctggttctttcttagtacaccttgtgctaggaaggactcgttgatttcgtaatata |
12831375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 12863449 - 12863350
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12863449 |
ttagtttttgctctgtttttattgtaaatattgtttggactttgctggttctttcttagtacaccttgtgctaggaaggactcgttgatttcgtaatata |
12863350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 37644707 - 37644775
Alignment:
| Q |
69 |
ttttttaaaatggtggagaattattgtaacacaaaaattaagttgtgatattaacttttttcacgcgca |
137 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37644707 |
ttttttaaaatggagaagaattattgtaacacaaaaattaagttgtgatattaactttttccacgcgca |
37644775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 37642457 - 37642513
Alignment:
| Q |
68 |
cttttttaaaatggtggagaattattgtaacacaaa--aattaagttgtgatattaa |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
37642457 |
cttttttaaaatggaggagaattattgtaacacaaattaattaagttgtaatattaa |
37642513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 37387830 - 37387790
Alignment:
| Q |
78 |
atggtggagaattattgtaacacaaaaattaagttgtgata |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37387830 |
atggaggagaactattgtaacacaaaaattaagttgtgata |
37387790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 37644652 - 37644690
Alignment:
| Q |
16 |
gacatcaaacaagagacatctacacatgtccttttttaa |
54 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37644652 |
gacatcaaacaagagacgtttacacatgtccttttttaa |
37644690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 11721775 - 11721848
Alignment:
| Q |
482 |
tagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||| || ||||||| ||||||||||||||||| | |||||| |
|
|
| T |
11721775 |
tagttcttccttggtacaccttgtgctaggaaaaacattttgatttgataatatattctattttagcctcttca |
11721848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 9e-93; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 18062872 - 18062660
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18062872 |
agacatctcatacatggaaccatgatgatctcgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgttgtaccataaact |
18062773 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
18062772 |
cgaccacgagtacgaccccctgcagactcggtccacaacctaagctttgttcctccatcaacctcttgcacaccatctccaattgtttcatcaatttggg |
18062673 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18062672 |
cttgtactgtact |
18062660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 546
Target Start/End: Original strand, 5048638 - 5048732
Alignment:
| Q |
452 |
tttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctatttta |
546 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||| ||||||| || | ||||| |||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
5048638 |
tttctgttgtaaatattgtttgaactttgctggttgtttcttaatataccttgtattaggaaggactcgttgatttcgtaatatattccatttta |
5048732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 546
Target Start/End: Original strand, 4784849 - 4784937
Alignment:
| Q |
458 |
ttgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctatttta |
546 |
Q |
| |
|
|||||||||||||| ||||||| | |||||| ||||||||| ||| | ||||||| | | | ||||||| ||||||||||| |||||| |
|
|
| T |
4784849 |
ttgtaaatattgttctgactttgttggttcttccttagtacaccttatactaggaaggtcactttgatttggtaatatattccatttta |
4784937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 548
Target Start/End: Original strand, 29217129 - 29217191
Alignment:
| Q |
486 |
tctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaac |
548 |
Q |
| |
|
||||||||| |||| |||||| |||||| ||| | ||||||| |||| ||||||||||||||| |
|
|
| T |
29217129 |
tctttcttaatacaccttgtgataggaatgacactttgatttggtaacatattctattttaac |
29217191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 37929265 - 37929362
Alignment:
| Q |
458 |
ttgtaaatattgtttggactttgctagttctttctta-gtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
||||||||||||||| ||| ||| | || ||||| || ||||| |||||||||||||||||| |||| || ||||||||||| |||||| | |||||| |
|
|
| T |
37929265 |
ttgtaaatattgttttgacattgtttgt-ctttcctatgtacaccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttca |
37929362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 552
Target Start/End: Complemental strand, 8547397 - 8547337
Alignment:
| Q |
493 |
tagtacatcttgtgctaggaaagactcattgatttc-gtaatatattctattttaacttct |
552 |
Q |
| |
|
||||||| |||||||||||||| | |||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
8547397 |
tagtacaccttgtgctaggaaatattcattgttttgagtaatatattctattttagcttct |
8547337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 10989732 - 10989944
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
10989732 |
agacatctcatacatggaaccatgatgatctcgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgctgtaccataaact |
10989831 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
10989832 |
cgaccacgagtacgaccccctgcagactcggtccacaacctaagctttgttcctccatcaacctcttgcacaccatctccagttgtttcatcaatttggg |
10989931 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10989932 |
cttgtactgtact |
10989944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 437 - 555
Target Start/End: Original strand, 20510530 - 20510648
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| || |||||| |||||||||||||||||||||| |
|
|
| T |
20510530 |
ttagtttttgctctgtttctattgtaaatattgtttggacttttttggttctttcttagtacaccttatgttaggaaggactcattgatttcgtaatata |
20510629 |
T |
|
| Q |
537 |
ttctattttaacttcttca |
555 |
Q |
| |
|
||| |||||| |||||||| |
|
|
| T |
20510630 |
ttccattttagcttcttca |
20510648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 449 - 550
Target Start/End: Original strand, 29969995 - 29970096
Alignment:
| Q |
449 |
ctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaac |
548 |
Q |
| |
|
|||||||| |||||||||||||||| || |||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
29969995 |
ctgtttctcttgtaaatattgtttgaaccatgctgtttctttcttagtacaccttgtattaggaaggacacattgatttcgtaatatattccattttaac |
29970094 |
T |
|
| Q |
549 |
tt |
550 |
Q |
| |
|
|| |
|
|
| T |
29970095 |
tt |
29970096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 26135869 - 26135928
Alignment:
| Q |
302 |
atcagcctcttgcacaccatctctagttgtttcatcaatctgggcttgtactgtactcaa |
361 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| | |||||||||| ||||||| |
|
|
| T |
26135869 |
atcagcctcttgcacaccatctccaattgtttcatcaatttaggcttgtactatactcaa |
26135928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 19233622 - 19233666
Alignment:
| Q |
501 |
cttgtgctaggaaagactcattgatttcgtaatatattctatttt |
545 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
19233622 |
cttgtgctaggaaggacatattgattttgtaatatattctatttt |
19233666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 17921087 - 17921299
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
17921087 |
agacatctcatacatggaaccatgatgatctcgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgctgtaccataaact |
17921186 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
17921187 |
cgaccacgagtacgaccccctgcagactcggtccacaacctaagctttgttcctccatcaacctcttgcacaccatctccagttgtttcatcaatttggg |
17921286 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17921287 |
cttgtactgtact |
17921299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 437 - 555
Target Start/End: Complemental strand, 33692862 - 33692743
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctag-ttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatat |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
33692862 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctgggttctttcttagtacaccttatgctaggaaggactcattgatttcgtaatat |
33692763 |
T |
|
| Q |
536 |
attctattttaacttcttca |
555 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
33692762 |
attccattttaacttcttca |
33692743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 14557607 - 14557650
Alignment:
| Q |
68 |
cttttttaaaatggtggagaattattgtaacacaaaaattaagt |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
14557607 |
ctttttttaaatggaggagaattattgtaacacaataattaagt |
14557650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 548
Target Start/End: Original strand, 39771115 - 39771161
Alignment:
| Q |
502 |
ttgtgctaggaaagactcattgatttcgtaatatattctattttaac |
548 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
39771115 |
ttgtgctaggaatgacacattgttttggtaatatattctattttaac |
39771161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 4e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 146 - 361
Target Start/End: Original strand, 21731932 - 21732147
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21731932 |
agacatctcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgttgtaccataaact |
21732031 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||| || ||||||||||||||| | |
|
|
| T |
21732032 |
cgaccacgagtacgaccccctgcagactcgatccacaacctaagctttgttcctccatcaacctcttgcacaccatctccagctgtttcatcaatctgag |
21732131 |
T |
|
| Q |
346 |
cttgtactgtactcaa |
361 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
21732132 |
cttgtattgtactcaa |
21732147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 146 - 361
Target Start/End: Original strand, 27663780 - 27663995
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
27663780 |
agacatctcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagataagtctgttgtaccgtaaact |
27663879 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27663880 |
cgaccacgggtatgaccccctgcagactcgatccccaacctaagttttgttcctccatcaacttcttgcacaccatctccagttgtttcatcaatttggg |
27663979 |
T |
|
| Q |
346 |
cttgtactgtactcaa |
361 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
27663980 |
cttgtactgtagtcaa |
27663995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 154 - 361
Target Start/End: Original strand, 10365001 - 10365204
Alignment:
| Q |
154 |
catacatggaaccatgatgatcttgagatttttg-agtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaactcgaccac |
252 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10365001 |
catacgtggaaccatgatgattttgagatttttttagtaaatgacgtgcacccacaccgaaggttgacatacaagtttgttgtaccataaactcgaccac |
10365100 |
T |
|
| Q |
253 |
gggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctgggcttgtac |
352 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||| | ||||| ||||||| ||| ||||| || |||||| ||||||||||||||||||||| ||| |
|
|
| T |
10365101 |
gggtacgacc-----cagactcggtccagaactcaaatattgttgttccatcaaccttttgcatacaatctctggttgtttcatcaatctgggctattac |
10365195 |
T |
|
| Q |
353 |
tgtactcaa |
361 |
Q |
| |
|
||||||||| |
|
|
| T |
10365196 |
tgtactcaa |
10365204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 437 - 555
Target Start/End: Original strand, 41529527 - 41529645
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41529527 |
ttagtttttgctctgtttctattgtaaatattgtttggacttttctgattctttcttagtacaccttgtgctaggaaggactcattgatttcgtaatata |
41529626 |
T |
|
| Q |
537 |
ttctattttaacttcttca |
555 |
Q |
| |
|
||| |||||| |||||||| |
|
|
| T |
41529627 |
ttccattttagcttcttca |
41529645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 454 - 538
Target Start/End: Complemental strand, 4996377 - 4996293
Alignment:
| Q |
454 |
tctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatatt |
538 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||||||||| || |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4996377 |
tctattgtaaatattgtttggacctggatgtttctttcttagtgcactttgtgctaggaaagactcattgttttcgtaatatatt |
4996293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 38154063 - 38154160
Alignment:
| Q |
458 |
ttgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
||||||||||||||| ||| ||| | || ||| || ||||| |||||||||||||||||| |||| || ||||||||||| |||||| | |||||| |
|
|
| T |
38154063 |
ttgtaaatattgtttcgacgttgtttgtccttcctatgtacaccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttca |
38154160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 21420841 - 21420629
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21420841 |
agacatctcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagataagtcggttgtaccataaact |
21420742 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
21420741 |
cgaccacgggtacgaccccctgcagacttggtccacaacctaagttttgttcctccatcaacttcttgcacaccatctccagttgtttcatcaatcttgg |
21420642 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
21420641 |
cttgtaccgtact |
21420629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 16691926 - 16692137
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
16691926 |
agacatctcatacatagaactatgatgatcttgagatttttgagtaaatgacgtacacccacgcagaaggttgacagacaagtctattgtaccataaact |
16692025 |
T |
|
| Q |
246 |
cgaccacgggtacgaccccctgcagactcggtccacaacccaagttttgttcctccatcagcctcttgcacaccatctctagttgtttcatcaatctggg |
345 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
16692026 |
tgaccacgagtacga-cccctgcagactcggtccacaacctaagctttgttcctccatcaacctcttgcacaccatctccagttgtttcatcaatttggg |
16692124 |
T |
|
| Q |
346 |
cttgtactgtact |
358 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16692125 |
cttgtactgtact |
16692137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 437 - 553
Target Start/End: Complemental strand, 14490689 - 14490573
Alignment:
| Q |
437 |
ttagtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
536 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490689 |
ttagtttttgctctgcttctattgtaaatattgtttggattttgctgattctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatata |
14490590 |
T |
|
| Q |
537 |
ttctattttaacttctt |
553 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
14490589 |
ttccattttaacttctt |
14490573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 4405 - 4292
Alignment:
| Q |
146 |
agacatgtcatacatggaaccatgatgatcttgagatttttgagtaaatgacgtgcacccacgccaaaggttgacagacaagtctgttgtaccataaact |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
4405 |
agacatctcatacatggaaccatgatgatctcgagatttttgagtaaatgacgtgcacccacgccgaaggttgacagacaagtctgctgtaccataaact |
4306 |
T |
|
| Q |
246 |
cgaccacgggtacg |
259 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
4305 |
cgaccacgagtacg |
4292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 37737809 - 37737742
Alignment:
| Q |
486 |
tctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttctt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
37737809 |
tctttcttagtacatcttgtgctaggaaagtcacattgttttggtaatatattctattttaacttctt |
37737742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 495 - 555
Target Start/End: Original strand, 31640434 - 31640494
Alignment:
| Q |
495 |
gtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
31640434 |
gtacatcttgtactaggaaagacactttgatttggtaatatattccattttaacttcttca |
31640494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 553
Target Start/End: Complemental strand, 36176599 - 36176485
Alignment:
| Q |
439 |
agtttttgctctgtttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatatt |
538 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| ||||||| | ||||| ||||||| | |||||||||||| || | ||||||| |||||||||| |
|
|
| T |
36176599 |
agtttttgctcagattctcttgtaaatattgtttcgactttgttgtttcttccttagtaaactttgtgctaggaagaacactttgatttggtaatatatt |
36176500 |
T |
|
| Q |
539 |
ctattttaacttctt |
553 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
36176499 |
tcattttaacctctt |
36176485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 555
Target Start/End: Original strand, 9840922 - 9841024
Alignment:
| Q |
453 |
ttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttct |
552 |
Q |
| |
|
|||| |||||| |||||| | ||||||| | ||||| ||||||||||||||||||| ||| ||| | ||||||| |||||||||| |||||| | ||| |
|
|
| T |
9840922 |
ttctcttgtaagtattgtgtagactttgttgtttcttccttagtacatcttgtgctaagaatgacactttgatttggtaatatatttcattttatcctct |
9841021 |
T |
|
| Q |
553 |
tca |
555 |
Q |
| |
|
||| |
|
|
| T |
9841022 |
tca |
9841024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 546
Target Start/End: Complemental strand, 27708129 - 27708036
Alignment:
| Q |
453 |
ttctattgtaaatattgtttggactttgctagttctttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctatttta |
546 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||| ||||||||| ||| |||| || ||| | || |||| ||||||||||| |||||| |
|
|
| T |
27708129 |
ttctcttgtaaatattgtttggactttgttgtttcttccttagtacacattgcactagaaaggacactttaatttggtaatatattccatttta |
27708036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 555
Target Start/End: Complemental strand, 37120797 - 37120737
Alignment:
| Q |
495 |
gtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
||||||||||||||||| | |||| ||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
37120797 |
gtacatcttgtgctaggtagaactctttgatttagtaatatattccattttagcctcttca |
37120737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 39117601 - 39117637
Alignment:
| Q |
485 |
ttctttcttagtacatcttgtgctaggaaagactcat |
521 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
39117601 |
ttctttcctagtacaccttgtgctaggaaagactcat |
39117637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 495 - 555
Target Start/End: Original strand, 11324662 - 11324722
Alignment:
| Q |
495 |
gtacatcttgtgctaggaaagactcattgatttcgtaatatattctattttaacttcttca |
555 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11324662 |
gtacatcttgtgctaggaaagacactttgatttcgtaatatattccattttaacttcttca |
11324722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 3534276 - 3534219
Alignment:
| Q |
489 |
ttcttagtacatcttgtgctaggaaagactcattgatttcgtaatatattctatttta |
546 |
Q |
| |
|
||||||||||| ||||||||||||||||| | || |||| ||||||||||| |||||| |
|
|
| T |
3534276 |
ttcttagtacaccttgtgctaggaaagacactttaatttggtaatatattccatttta |
3534219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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