View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9272_low_1 (Length: 387)

Name: NF9272_low_1
Description: NF9272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9272_low_1
NF9272_low_1
[»] chr2 (6 HSPs)
chr2 (139-387)||(374675-374919)
chr2 (13-147)||(375112-375246)
chr2 (193-237)||(45446577-45446621)
chr2 (193-237)||(12949554-12949598)
chr2 (123-174)||(29239109-29239160)
chr2 (116-174)||(39329555-39329612)
[»] chr1 (6 HSPs)
chr1 (104-174)||(8711010-8711081)
chr1 (107-174)||(16242217-16242284)
chr1 (345-387)||(3143188-3143230)
chr1 (193-242)||(10778052-10778101)
chr1 (121-174)||(35460562-35460615)
chr1 (119-175)||(42080275-42080331)
[»] chr8 (6 HSPs)
chr8 (100-173)||(40468430-40468503)
chr8 (101-170)||(22593925-22593994)
chr8 (113-174)||(9195879-9195940)
chr8 (103-174)||(32957594-32957670)
chr8 (122-172)||(2071446-2071496)
chr8 (328-373)||(10982931-10982976)
[»] chr5 (8 HSPs)
chr5 (97-174)||(25256988-25257066)
chr5 (97-174)||(25320778-25320856)
chr5 (332-386)||(19341778-19341832)
chr5 (113-174)||(4518062-4518123)
chr5 (122-174)||(15711881-15711933)
chr5 (122-176)||(2883953-2884007)
chr5 (176-237)||(4348003-4348064)
chr5 (117-174)||(5355475-5355532)
[»] chr3 (7 HSPs)
chr3 (112-174)||(4698929-4698991)
chr3 (105-162)||(24486224-24486281)
chr3 (107-174)||(41351493-41351560)
chr3 (316-386)||(566930-567000)
chr3 (107-162)||(31996936-31996991)
chr3 (105-146)||(39396924-39396965)
chr3 (105-174)||(49341145-49341214)
[»] chr7 (4 HSPs)
chr7 (104-172)||(18064872-18064939)
chr7 (111-173)||(19578346-19578408)
chr7 (195-242)||(11828878-11828925)
chr7 (121-162)||(48562624-48562665)
[»] chr4 (7 HSPs)
chr4 (103-174)||(31264589-31264660)
chr4 (105-174)||(32584814-32584883)
chr4 (105-162)||(32150033-32150090)
chr4 (121-174)||(56269336-56269389)
chr4 (106-174)||(19904183-19904251)
chr4 (113-172)||(3283274-3283333)
chr4 (342-380)||(25200462-25200500)
[»] chr6 (1 HSPs)
chr6 (105-173)||(6865329-6865397)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 139 - 387
Target Start/End: Complemental strand, 374919 - 374675
Alignment:
Q  139 ggataatgtcatttggtgagagatggatacaaaaaattgagttaatattttctacatttataaaaataaatgtagattaccatttagaaagagatacacg 238  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||   |||||||||||||||||||||||||||||||||     
T  374919 ggataatgtcatttggtgagagatagata-aaaaaattgagttaatattctctccatttataa---taaatgtagattaccatttagaaagagatacacc 374824  T
Q  239 aaaatattaattaagatcttgtccatttgttaaaagtggatagtgtcatttggtgagatataggtacaaaaaagttttagtgtgtcctgccactaagtgg 338  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  374823 taaatattaattaagatcttgtccatttgttaaaagtggatagtgtcatttggtgagatataggtacaaaaaagttttagtgtgtcctgccactaagtgg 374724  T
Q  339 gttccactactattaattactttcaaacttctttaaatctttctctctt 387  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  374723 gttccactactattaattactttcaaacttctttaaatctttatctctt 374675  T

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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 375246 - 375112
Alignment:
Q  13 tggtgtttagatatagggacggtgggagtatttgatagttatctaaagccctctaaagagaagcactctaattagtattagtactattttttgagttaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  375246 tggtgtttagatatagggacggtgggagtatttgatagttatctaaagccctctaaagagaagcactctaattagtattagtactattttttgagttaaa 375147  T
Q  113 atcctctccatttgctaaaaatagatggataatgt 147  Q
    |||||||||||||||||||||||||||||||||||    
T  375146 atcctctccatttgctaaaaatagatggataatgt 375112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 45446577 - 45446621
Alignment:
Q  193 catttataaaaataaatgtagattaccatttagaaagagatacac 237  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  45446577 catttataaaaataaatggagattgccatttagaaagagatacac 45446621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 12949598 - 12949554
Alignment:
Q  193 catttataaaaataaatgtagattaccatttagaaagagatacac 237  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||    
T  12949598 catttataaaaataaatggaggataccatttagaaagagatacac 12949554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 29239109 - 29239160
Alignment:
Q  123 tttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||||| || ||||| |||||||||  |||||||||||||||||||||    
T  29239109 tttgctaaaattaaatggacaatgtcattctgtgagagatggatacaaaaaa 29239160  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 39329555 - 39329612
Alignment:
Q  116 ctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||||||| | |||||| |||||||| |||||||| |||||||| |||||||||||    
T  39329555 ctctccatttgtttaaaataaatggataa-gtcatttgatgagagatagatacaaaaaa 39329612  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 8711081 - 8711010
Alignment:
Q  104 tgagttaaaatcctctccatttgct-aaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||| || |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  8711081 tgagtcaagatcctctccatttgcttaaaaataaatggataatgtcatttggtgagagatagatacaaaaaa 8711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 16242217 - 16242284
Alignment:
Q  107 gttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||| ||| ||| |||||||| |||||  ||||| |||||||||||||||||||| |||||||||||    
T  16242217 gttaagatcgtcttcatttgcttaaaatcaatggacaatgtcatttggtgagagatagatacaaaaaa 16242284  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 3143188 - 3143230
Alignment:
Q  345 ctactattaattactttcaaacttctttaaatctttctctctt 387  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||    
T  3143188 ctactattaattattttcaaacttctttatatctttatctctt 3143230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 10778101 - 10778052
Alignment:
Q  193 catttataaaaataaatgtagattaccatttagaaagagatacacgaaaa 242  Q
    |||||||||||| ||||| |||||| |||||||||||||| |||| ||||    
T  10778101 catttataaaaacaaatggagattatcatttagaaagagacacacaaaaa 10778052  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 35460562 - 35460615
Alignment:
Q  121 catttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||| ||||||||| ||||| ||| |||||| ||||||||| |||||||||||    
T  35460562 catttactaaaaataaatggagaatctcatttagtgagagatagatacaaaaaa 35460615  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 42080275 - 42080331
Alignment:
Q  119 tccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaat 175  Q
    ||||||||||||||||| ||||| |||   |||||||||||||| ||||| ||||||    
T  42080275 tccatttgctaaaaataaatggaaaattcaatttggtgagagatagataccaaaaat 42080331  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 40468430 - 40468503
Alignment:
Q  100 tttttgagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaa 173  Q
    |||||||||||||||  ||| ||||||||||||||| ||||||||||||||||  |||||||| ||||||||||    
T  40468430 tttttgagttaaaattttcttcatttgctaaaaataaatggataatgtcatttaatgagagatagatacaaaaa 40468503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 22593925 - 22593994
Alignment:
Q  101 ttttgagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaa 170  Q
    ||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| || ||| |||||||    
T  22593925 ttttgagttaagatcctctccatttgcttaaaataaatggacaatgtcatttggtaagcgatagatacaa 22593994  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 9195879 - 9195940
Alignment:
Q  113 atcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||||||||||||||| || ||||||||| |||||| |||||||||  ||||||||||    
T  9195879 atcctctccatttgctaaaagtaaatggataatatcattttgtgagagataaatacaaaaaa 9195940  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 32957594 - 32957670
Alignment:
Q  103 ttgagttaaaatcctctccatttgctaaaaatagatgg-----ataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||||||||| ||||||||||||||||||| | ||     ||||| |||||| ||||||||| |||||||||||    
T  32957594 ttgagttaaaatcatctccatttgctaaaaataaaaggataatataatatcatttagtgagagatagatacaaaaaa 32957670  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 2071446 - 2071496
Alignment:
Q  122 atttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaa 172  Q
    ||||||||||||||||| |||||| ||||||||||| |||| |||| ||||    
T  2071446 atttgctaaaaatagatagataatatcatttggtgaaagatagataaaaaa 2071496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 10982931 - 10982976
Alignment:
Q  328 ccactaagtgggttccactactattaattactttcaaacttcttta 373  Q
    |||||||||||  ||||||||||||||||| | |||||||||||||    
T  10982931 ccactaagtggactccactactattaattattatcaaacttcttta 10982976  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 25257066 - 25256988
Alignment:
Q  97 tattttttga-gttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||||| ||||| ||||| | ||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  25257066 tattttttgaagttaagatcctatacatttgctaaaaataaatggacaatgtcattttgtgagagatagatacaaaaaa 25256988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 25320856 - 25320778
Alignment:
Q  97 tattttttga-gttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||||| ||||| ||||| | ||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||    
T  25320856 tattttttgaagttaagatcctatacatttgctaaaaataaatggacaatgtcattttgtgagagatagatacaaaaaa 25320778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 19341778 - 19341832
Alignment:
Q  332 taagtgggttccactactattaattactttcaaacttctttaaatctttctctct 386  Q
    |||||||||||||||||||||||||| ||||||| || |||| |||||| |||||    
T  19341778 taagtgggttccactactattaattattttcaaatttttttatatctttgtctct 19341832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 4518062 - 4518123
Alignment:
Q  113 atcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||||||||| || |||||| | ||| |||||||||| ||||||||| |||||||||||    
T  4518062 atcctctccatttacttaaaataaacggagaatgtcatttagtgagagatagatacaaaaaa 4518123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 15711881 - 15711933
Alignment:
Q  122 atttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||| |||||||| |||||||||||||||| |||||||||  ||||||||||    
T  15711881 atttgttaaaaataaatggataatgtcatttagtgagagatatatacaaaaaa 15711933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 2884007 - 2883953
Alignment:
Q  122 atttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaatt 176  Q
    ||||||| |||||| ||||| ||||||||||||||| ||||  ||||||||||||    
T  2884007 atttgcttaaaataaatggagaatgtcatttggtgaaagatatatacaaaaaatt 2883953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 4348003 - 4348064
Alignment:
Q  176 tgagttaatattttctacatttataaaaataaatgtagattaccatttagaaagagatacac 237  Q
    |||||||| ||  ||| ||| |||||||||||||| ||| | ||||||||||||||||||||    
T  4348003 tgagttaagatcctctccatatataaaaataaatggagaatgccatttagaaagagatacac 4348064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 5355532 - 5355475
Alignment:
Q  117 tctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||||| | |||| | || |||||||| |||||||||||||| |||||||||||    
T  5355532 tctccatttgtttaaaagaaatagataatgttatttggtgagagatagatacaaaaaa 5355475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 4698929 - 4698991
Alignment:
Q  112 aatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||| ||||||||| ||||||||| || ||||||||||||||||||||||| |||||||||||    
T  4698929 aatcatctccatttactaaaaataaatagataatgtcatttggtgagagatagatacaaaaaa 4698991  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 24486224 - 24486281
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagat 162  Q
    |||||||||||||||| |||||||||||||| ||| ||||||| ||||||||| ||||    
T  24486224 gagttaaaatcctctctatttgctaaaaataaatgaataatgttatttggtgatagat 24486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 41351560 - 41351493
Alignment:
Q  107 gttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||| || ||||| |||||||||||||| ||| |||||||||||| ||||||||| || ||||||||    
T  41351560 gttaagattctctctatttgctaaaaataaatgaataatgtcattttgtgagagatagacacaaaaaa 41351493  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 566930 - 567000
Alignment:
Q  316 tagtgtgtcctgccactaagtgggttccactactattaattactttcaaacttctttaaatctttctctct 386  Q
    ||||| ||||| ||||||| ||||| |||||||||||| ||| |||||||||||||||  ||||| |||||    
T  566930 tagtgggtcctaccactaaatgggtcccactactattacttattttcaaacttctttatgtctttatctct 567000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 31996991 - 31996936
Alignment:
Q  107 gttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagat 162  Q
    ||||||||||||| |||||||||||| || || |||||||||||||| ||| ||||    
T  31996991 gttaaaatcctcttcatttgctaaaagtaaatagataatgtcatttgatgaaagat 31996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 39396924 - 39396965
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatg 146  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  39396924 gagttaaaatcctctctatttgttaaaaataaatggataatg 39396965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 49341145 - 49341214
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||| ||| ||| |||||||| |||||| ||||| ||||||||||||  ||||||  ||||||||||    
T  49341145 gagttaagatcttcttcatttgcttaaaataaatggacaatgtcatttgggaagagatatatacaaaaaa 49341214  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 18064939 - 18064872
Alignment:
Q  104 tgagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaa 172  Q
    |||||||| ||||||||||||| ||||||||| | ||||||| |||||||||||||||| |||||||||    
T  18064939 tgagttaagatcctctccattt-ctaaaaatacagggataatatcatttggtgagagatagatacaaaa 18064872  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 19578408 - 19578346
Alignment:
Q  111 aaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaa 173  Q
    ||||||||| ||||||||||| ||| ||||||| ||||||||||||||| || ||||||||||    
T  19578408 aaatcctcttcatttgctaaacataaatggatattgtcatttggtgagaaatagatacaaaaa 19578346  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 11828878 - 11828925
Alignment:
Q  195 tttataaaaataaatgtagattaccatttagaaagagatacacgaaaa 242  Q
    |||||||||||||||| ||| | |||||||||||||||||||| ||||    
T  11828878 tttataaaaataaatggagaatgccatttagaaagagatacacaaaaa 11828925  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 48562624 - 48562665
Alignment:
Q  121 catttgctaaaaatagatggataatgtcatttggtgagagat 162  Q
    |||||| |||||||| ||||||||||||||||| ||||||||    
T  48562624 catttgttaaaaataaatggataatgtcatttgatgagagat 48562665  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 31264660 - 31264589
Alignment:
Q  103 ttgagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||||| ||||||||||||| || |||| | ||||||||||||||||| |||||||| || ||||||||    
T  31264660 ttgagttaagatcctctccatttacttaaaacaaatggataatgtcatttgatgagagatagacacaaaaaa 31264589  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 32584883 - 32584814
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    ||||||| ||| |||||||||||| |||||| ||||||| || |||||||||||| ||| ||||||||||    
T  32584883 gagttaagatcatctccatttgcttaaaataaatggatattgccatttggtgagatatgaatacaaaaaa 32584814  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 32150033 - 32150090
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagat 162  Q
    ||||||| ||| |||||||||||||||| || ||||||| || |||||||||||||||    
T  32150033 gagttaagatcatctccatttgctaaaagtaaatggatattgccatttggtgagagat 32150090  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 56269336 - 56269389
Alignment:
Q  121 catttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||||| ||| || ||||||||||||||||||||||||||  ||||||||||    
T  56269336 catttgcttaaagtaaatggataatgtcatttggtgagagataaatacaaaaaa 56269389  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 19904183 - 19904251
Alignment:
Q  106 agttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaaa 174  Q
    |||||| |||||||| |||||||||||||| || |||||| ||||||| |||||| | ||||| |||||    
T  19904183 agttaagatcctctctatttgctaaaaataaattgataatatcatttgctgagaggtagatacgaaaaa 19904251  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 3283333 - 3283274
Alignment:
Q  113 atcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaa 172  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||| |||| ||||    
T  3283333 atcctctccatttgcttaaaataagtggacaatgtcatttggtgaaagatagataaaaaa 3283274  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 25200500 - 25200462
Alignment:
Q  342 ccactactattaattactttcaaacttctttaaatcttt 380  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  25200500 ccactactattaattattttcaaacttctttaagtcttt 25200462  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 6865397 - 6865329
Alignment:
Q  105 gagttaaaatcctctccatttgctaaaaatagatggataatgtcatttggtgagagatggatacaaaaa 173  Q
    ||||||| |||||||| |||||||||||||| ||| | ||||| |||| | ||||||| |||| |||||    
T  6865397 gagttaacatcctctctatttgctaaaaataaatgaacaatgttatttagcgagagatagatataaaaa 6865329  T

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