View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9272_low_10 (Length: 225)
Name: NF9272_low_10
Description: NF9272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9272_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 42795508 - 42795312
Alignment:
| Q |
16 |
atactacaatgtatcttcttctcgaagatatggccctccaagtttttacataaatttagaacgttcgtacttaataatgtcacttgtcaattaaacttgg |
115 |
Q |
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| T |
42795508 |
atactacaatgtatcttcttctcgaagatatggccctccaagtttttacataaatttagaacgttcgtacttaataatgtcacttgtcaattaaacttgg |
42795409 |
T |
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| Q |
116 |
ttggtctcaataagaataagaatgactaatcatcattac--nnnnnnnnagggaattaatcatcattacttaagcatttattcacctaggtaataag |
210 |
Q |
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| T |
42795408 |
ttggtctcaataagaataagaatgactaatcatcattacttttttttttagggaattaatcatcattacttaagcatttattcacctaggtaataag |
42795312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 42795568 - 42795518
Alignment:
| Q |
29 |
tcttcttctcgaagatatggccctccaagtttttacataaatttagaacgtt |
80 |
Q |
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| T |
42795568 |
tcttcttctcaaagatatgacc-tccaagtttttacataaatttagaacgtt |
42795518 |
T |
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