View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9272_low_6 (Length: 346)
Name: NF9272_low_6
Description: NF9272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9272_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 4956402 - 4956705
Alignment:
| Q |
19 |
tattgaagctgtatcatcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaaccctttttta |
118 |
Q |
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| T |
4956402 |
tattgaagctgtatcatcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaaccctttttta |
4956501 |
T |
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| Q |
119 |
aaccacctattctccataatatcaggtattgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagtttcgataaatctggtgaaaaccacc |
218 |
Q |
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| T |
4956502 |
aaccacctattctccataatatcaggtatcgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagttttgataagtccggtgaaaaccacc |
4956601 |
T |
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| Q |
219 |
taggacaccgaaactcacccttgtaaattttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaac |
318 |
Q |
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| T |
4956602 |
tgggacaccgaaactcacccttgtaaatcttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaac |
4956701 |
T |
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| Q |
319 |
acca |
322 |
Q |
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|||| |
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| T |
4956702 |
acca |
4956705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 35828442 - 35828201
Alignment:
| Q |
80 |
tcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctccataatatcaggtattgcaatcctagtttcaggcttagtatcaagaa |
179 |
Q |
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| T |
35828442 |
tcctcaacataaaatttaatatgcttaaaacctatcttaaaccaacgattctccataatctcaggaatagaaatcctagtttgaggtttaatatcaagaa |
35828343 |
T |
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| Q |
180 |
gacgaacaagcagtttcgataaatctggtgaaaaccacctaggacaccgaaactcacccttgtaaattttcttatacattgccataacatttt---gatc |
276 |
Q |
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| T |
35828342 |
gcctagtaagaagactaacaagttctggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattaggatc |
35828243 |
T |
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| Q |
277 |
atgaaaaggtaaataaccagccatcaaaacaaacaaaacaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828242 |
atgaaaaggtaaataaccagccatcaaaacaaacaaaacaac |
35828201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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