View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9272_low_7 (Length: 294)
Name: NF9272_low_7
Description: NF9272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9272_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 4098292 - 4098365
Alignment:
| Q |
118 |
aaattaccttcctttaaaacatgtgctcaataagatttcttcattctgcaaaatccgccaaccttgcttagcta |
191 |
Q |
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| T |
4098292 |
aaattaccttcctttaaaacatgtgctcaataagatttcttcattctgcaaaatccgccaaccttgcttagcta |
4098365 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 4098366 - 4098428
Alignment:
| Q |
221 |
cacataatgtattccaagcaatttaatgtactttttattcatcttgtttgcatcaccaccaaa |
283 |
Q |
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| T |
4098366 |
cacataacgtattccaagcaatttaatgtactttttattcatcttgtttgcatcaccatcaaa |
4098428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 4098152 - 4098246
Alignment:
| Q |
36 |
tcgttccaaattctaatattttggccat---------acattccggaatgatcgataactttatgtcttgc-tgtaggatgcttctccaagtaaa |
120 |
Q |
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| T |
4098152 |
tcgttccaaattctaatattttggccatcgaactaccacattccggaatgatcaataactttatgtcttgcttgtaggatgcttctccaagtaaa |
4098246 |
T |
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