View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9272_low_8 (Length: 274)
Name: NF9272_low_8
Description: NF9272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9272_low_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 53688581 - 53688854
Alignment:
| Q |
1 |
ttatcgtgtttattgtgaagaagtttttaaaaagaatcttggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagagaggt |
100 |
Q |
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| T |
53688581 |
ttatcgtgtttattgtgaagaagtttttaaaaagaatcttggtatactttttgttcatgacaggggattatatatcttggcctgattgtttgagagaggt |
53688680 |
T |
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| Q |
101 |
taatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaa |
200 |
Q |
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| T |
53688681 |
taatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaa |
53688780 |
T |
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| Q |
201 |
aaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgcataatgttcatagt |
274 |
Q |
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| T |
53688781 |
aaattctatgttgagaatttggagcatgatgatgaatagcagaagaacgcttggtgttgcataatgttcatagt |
53688854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 53695850 - 53695920
Alignment:
| Q |
190 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgc |
260 |
Q |
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| T |
53695850 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatgaatagcagaagaaggcttggtgttgc |
53695920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 53695703 - 53695794
Alignment:
| Q |
19 |
agaagtttttaaaaagaatcttggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagagaggttaatagttgc |
110 |
Q |
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| T |
53695703 |
agaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggccatattgtttgagagaggtaaatagttgc |
53695794 |
T |
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