View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9273_low_1 (Length: 564)
Name: NF9273_low_1
Description: NF9273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9273_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 171258 - 170707
Alignment:
| Q |
1 |
atcagtcatcactgttaagtgcaatgcatgtcaaacaaccttttatacaatttcaaggacaagaaagcattgaacatttcataaacaccgcaactaacta |
100 |
Q |
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| T |
171258 |
atcagtcatcactgttaagtgcaatgcatgtcaaacaaccttttttacaatttcaaggacaagaaagcattgaacatttcataaacaccgcaactaacta |
171159 |
T |
|
| Q |
101 |
tcaaagatctttactatcaagaacaccagctaaagttctaaacagaaaccctcacgacatcagcataccatagcttattctctgtttcaggcaagaacaa |
200 |
Q |
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| T |
171158 |
tcaaagatctttactatcaagaacaccagctaaagttctaaacagaaaccctcacgacatcagcataccatagcttattctctggttcaggcaagaacaa |
171059 |
T |
|
| Q |
201 |
gatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaaaacaacaaacttgttaagaaagtttgataaggtaaa |
300 |
Q |
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| T |
171058 |
gatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaacacaacaaacttgttaagaaagtttgataaggtaaa |
170959 |
T |
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| Q |
301 |
atccacaaatctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgggccctaatgtccatcaccgctcggtccaatgcatgccaaat |
400 |
Q |
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| T |
170958 |
atccacaaatctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgggccctaatgtccatcaccgctcggtccaatgcatgccaaat |
170859 |
T |
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| Q |
401 |
aaccnnnnnnnnnncaattcaaggacaagaaagcatttatattcgccactactaagattcatcactgctcagtccaatgcatgccaaataccttc-nnnn |
499 |
Q |
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| T |
170858 |
aaccttttttttttcaattcaaggacaagaaagcatttatattcgccactactaagattcatcactgctcagtccaatgcatgccaaataccttcttttt |
170759 |
T |
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| Q |
500 |
nnnnnncaatttcaaggacaataaagcatttatatttgccactactgatgtc |
551 |
Q |
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| T |
170758 |
ttttttcaatttcaaggacaataaagcatctatatttgccgctacttatgtc |
170707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 176 - 359
Target Start/End: Complemental strand, 171839 - 171656
Alignment:
| Q |
176 |
tattctctgtttcaggcaagaacaagatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaaaacaacaaact |
275 |
Q |
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||||||| ||||||||| |||||| |||||| ||||| || |||||||||||||| |||||||||||| ||||||||||||||| | || ||||||| |
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| T |
171839 |
tattctcagtttcaggctagaaca-gatataaaacttgcatggtctcagggaaaag-taaagacctaaa-taacaaggctaaactgaagaaaaacaaacc |
171743 |
T |
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| Q |
276 |
tgttaagaaagtttgataaggtaaaatccacaaatctcatatgtgt---gtgttatgttgctcactcatttgcaacaaataagttgg |
359 |
Q |
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| T |
171742 |
tgttaagaagttatcataaggtaaaatccacatatctcagatatgtatcttattatgttgctcactagtttgcaacatagaagttgg |
171656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 171321 - 171271
Alignment:
| Q |
309 |
atctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgg |
359 |
Q |
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||||||||||||| | ||||| ||||||||||||||||||| | ||||||| |
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| T |
171321 |
atctcatatgtgtatcttatgatgctcactcatttgcaacatagaagttgg |
171271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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