View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9273_low_10 (Length: 318)
Name: NF9273_low_10
Description: NF9273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9273_low_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 91 - 318
Target Start/End: Original strand, 38040613 - 38040840
Alignment:
| Q |
91 |
cttattttaatttcgttatttcatttagtagtaacaaatttcatttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38040613 |
cttattttaatttcgttatttcatttagtagtatcaaatttcatttttacgcctttaaataactttgatcgctagttaaattttttcttatcaaaatttg |
38040712 |
T |
|
| Q |
191 |
ttttctaatcaattaaacttgttgcagtcttcaagaatcaaagaaagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaacttt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38040713 |
ttttctaatcaattaaacttgttgcagtcttcaagaatcagaaaaaaattaaggaagaggaatctctgagagaatcttgtcttgtcaatggaagaacttt |
38040812 |
T |
|
| Q |
291 |
acgttgcagaagacgaagttctccttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38040813 |
acgttgcagaagacgaagttctccttat |
38040840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 318
Target Start/End: Original strand, 31836967 - 31837187
Alignment:
| Q |
101 |
tttcgttatttcatttagtagtaacaaatttcatttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatc |
200 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| || | ||||||||||||| ||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
31836967 |
tttcgttactttatttagtagtaacaaatttcatttttacaccattaaataactttgatggctagttatatttttttttattaaaatttgttttctaatc |
31837066 |
T |
|
| Q |
201 |
aattaaacttgttgcagtct---tcaagaatcaaagaaagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaactttacgttgc |
297 |
Q |
| |
|
|| |||||||||||||| | ||||||||| ||||| |||||||||||||||| ||||||||| |||||| ||| ||||||||| |||| |||| || |
|
|
| T |
31837067 |
aacgaaacttgttgcagtttatcacaagaatcagagaaaaattaaggaagagcaatttctgagagagtcttgtgttggcaatggaagcacttcacgtcgc |
31837166 |
T |
|
| Q |
298 |
agaagacgaagttctccttat |
318 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31837167 |
agaagacgaagttctccttat |
31837187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 318
Target Start/End: Original strand, 31840996 - 31841224
Alignment:
| Q |
101 |
tttcgttatttcatttagtagtaacaaatttcatttttacgccttaaaataactttgatctctagttaaattttttcttatcaaaatttgttttctaatc |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
31840996 |
tttcgttactttatttagtagtaacaaattttatttttacgccattaaataactttgatcgctagttatattttttcttattaagatttgttttctaatc |
31841095 |
T |
|
| Q |
201 |
aattaaacttgttgcagtctt--------------caagaatcaaagaaagattaaggaagagcaatctctgagagaatcttgtcttgtcaatggaagaa |
286 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| | | || ||||||||||||| ||||| ||| ||||| |||||||||||| | |
|
|
| T |
31841096 |
aacgaaacttgttgcagtcttctcttcaattatcacaagaatcagaaagcaatcaaggaagagcaatttctgatagagtcttg---tgtcaatggaagca |
31841192 |
T |
|
| Q |
287 |
ctttacgttgcagaagacgaagttctccttat |
318 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |
|
|
| T |
31841193 |
cttcacgtcgcagaagacgaagttctccttat |
31841224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University