View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9273_low_12 (Length: 251)
Name: NF9273_low_12
Description: NF9273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9273_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 43360845 - 43361081
Alignment:
| Q |
12 |
ttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtcctttcgaa |
111 |
Q |
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| T |
43360845 |
ttattctaactgttactgtttaacatgcaattctataaagctgctactattgtcattggaggaaaacttgcagtactctaacatgtcatgtcctttcgaa |
43360944 |
T |
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| Q |
112 |
ggtgatgttgtannnnnnnaatagtgttaattgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagttaaaca |
211 |
Q |
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| T |
43360945 |
ggtgatgttgtatttttttaatagtgttatttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgattgtgttagttaaaca |
43361044 |
T |
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| Q |
212 |
tagagtggaaattaccacatttgatctttgctttatg |
248 |
Q |
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| T |
43361045 |
tagagtggaaattaccacatttgatctttgctttatg |
43361081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 49414301 - 49414126
Alignment:
| Q |
50 |
agctgctactattgtcattggaggaaaacttgcagtactctaacatgtc--atgtcctttcgaaggtgatgttgtannnnnnnaatagtgttaattgttg |
147 |
Q |
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| T |
49414301 |
agctactactattgtcattggaagaaagtttgtagtaccctaacatgtcatatgtcctttaggtggtgatgttgta-taattgaatattg----ttgttg |
49414207 |
T |
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| Q |
148 |
tgtattgatattcaagctgtgatttacctcgaagtatttgagccatgat-tgt--gttagttaaacatagagtggaaatta |
225 |
Q |
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| T |
49414206 |
tgtaatgatattcaagctgtgatttacttcaaagtatttgagacatgatgtgttaattagttcgacatagagtggaaatta |
49414126 |
T |
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