View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9273_low_4 (Length: 397)

Name: NF9273_low_4
Description: NF9273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9273_low_4
NF9273_low_4
[»] chr8 (16 HSPs)
chr8 (202-383)||(13878882-13879063)
chr8 (211-383)||(25090951-25091122)
chr8 (204-383)||(20824863-20825042)
chr8 (207-383)||(17700044-17700220)
chr8 (207-325)||(37434359-37434477)
chr8 (207-362)||(42176955-42177110)
chr8 (224-376)||(43271008-43271159)
chr8 (202-383)||(41664763-41664944)
chr8 (202-383)||(7924950-7925131)
chr8 (223-383)||(8300367-8300527)
chr8 (224-317)||(32267184-32267277)
chr8 (223-383)||(9923165-9923325)
chr8 (273-334)||(23942700-23942761)
chr8 (292-377)||(8902397-8902482)
chr8 (239-327)||(24794366-24794454)
chr8 (282-334)||(44082487-44082539)
[»] chr5 (19 HSPs)
chr5 (206-383)||(27796048-27796225)
chr5 (207-383)||(10780765-10780941)
chr5 (205-383)||(33170222-33170400)
chr5 (204-383)||(8299579-8299758)
chr5 (212-376)||(27165370-27165534)
chr5 (204-376)||(25856836-25857008)
chr5 (232-383)||(42928695-42928846)
chr5 (202-383)||(23238947-23239128)
chr5 (202-376)||(42514291-42514465)
chr5 (345-383)||(28535213-28535251)
chr5 (223-317)||(30731730-30731824)
chr5 (232-317)||(27116598-27116683)
chr5 (287-328)||(30509527-30509568)
chr5 (287-328)||(30549867-30549908)
chr5 (239-328)||(38358086-38358175)
chr5 (273-355)||(22174460-22174542)
chr5 (292-338)||(23256032-23256078)
chr5 (345-383)||(31642075-31642113)
chr5 (345-383)||(35983329-35983367)
[»] chr4 (14 HSPs)
chr4 (202-383)||(54482554-54482735)
chr4 (207-383)||(48312658-48312834)
chr4 (211-383)||(55725110-55725282)
chr4 (202-383)||(46146241-46146422)
chr4 (223-383)||(19755831-19755991)
chr4 (223-383)||(19783815-19783975)
chr4 (292-383)||(11586683-11586774)
chr4 (228-349)||(19733402-19733523)
chr4 (202-383)||(23641986-23642167)
chr4 (202-383)||(23647644-23647825)
chr4 (202-383)||(47419368-47419549)
chr4 (300-383)||(5789585-5789668)
chr4 (273-325)||(19115058-19115110)
chr4 (239-327)||(42952937-42953025)
[»] chr3 (15 HSPs)
chr3 (204-383)||(48569436-48569615)
chr3 (207-383)||(12341655-12341831)
chr3 (207-383)||(19891241-19891417)
chr3 (205-383)||(962561-962739)
chr3 (230-383)||(3141415-3141568)
chr3 (202-383)||(34332210-34332391)
chr3 (202-383)||(2364841-2365022)
chr3 (214-367)||(16179527-16179680)
chr3 (264-334)||(42674896-42674966)
chr3 (256-361)||(17077747-17077852)
chr3 (294-383)||(20531538-20531627)
chr3 (288-331)||(20367162-20367205)
chr3 (223-317)||(19919645-19919739)
chr3 (273-334)||(36709523-36709584)
chr3 (291-355)||(52907699-52907763)
[»] chr2 (9 HSPs)
chr2 (204-383)||(33515604-33515783)
chr2 (211-376)||(12646092-12646257)
chr2 (207-383)||(14440308-14440484)
chr2 (88-148)||(43659033-43659093)
chr2 (239-383)||(28253284-28253428)
chr2 (294-366)||(37445674-37445746)
chr2 (249-359)||(37437578-37437688)
chr2 (273-334)||(35488450-35488511)
chr2 (274-334)||(8065728-8065788)
[»] scaffold1350 (1 HSPs)
scaffold1350 (211-383)||(108-280)
[»] chr6 (15 HSPs)
chr6 (211-383)||(10576654-10576826)
chr6 (207-383)||(17605734-17605910)
chr6 (202-383)||(13938283-13938463)
chr6 (207-376)||(21629522-21629691)
chr6 (210-383)||(20882435-20882610)
chr6 (204-383)||(17577113-17577294)
chr6 (232-383)||(18681999-18682150)
chr6 (239-373)||(14372423-14372557)
chr6 (223-383)||(24766830-24766990)
chr6 (297-376)||(15956482-15956560)
chr6 (202-383)||(2554170-2554351)
chr6 (300-366)||(18588930-18588996)
chr6 (300-366)||(10919957-10920023)
chr6 (264-326)||(21549469-21549531)
chr6 (288-328)||(33805399-33805439)
[»] chr7 (15 HSPs)
chr7 (244-383)||(31423166-31423305)
chr7 (294-383)||(37255322-37255411)
chr7 (202-383)||(11276643-11276824)
chr7 (202-383)||(4937523-4937704)
chr7 (223-383)||(234854-235014)
chr7 (228-376)||(39931017-39931165)
chr7 (202-383)||(29968538-29968719)
chr7 (223-383)||(17721199-17721359)
chr7 (228-374)||(36364089-36364235)
chr7 (213-334)||(18768021-18768142)
chr7 (267-383)||(47877546-47877662)
chr7 (239-334)||(34457590-34457685)
chr7 (288-366)||(20349544-20349622)
chr7 (273-338)||(5327372-5327437)
chr7 (288-328)||(17856348-17856388)
[»] chr1 (8 HSPs)
chr1 (239-383)||(47622509-47622653)
chr1 (292-366)||(20987736-20987810)
chr1 (202-383)||(6051167-6051348)
chr1 (223-376)||(35541605-35541758)
chr1 (292-355)||(33142698-33142761)
chr1 (239-346)||(49264396-49264503)
chr1 (276-366)||(38070413-38070503)
chr1 (292-366)||(52692052-52692126)
[»] scaffold0034 (1 HSPs)
scaffold0034 (202-383)||(105238-105419)
[»] scaffold0472 (1 HSPs)
scaffold0472 (229-383)||(3816-3970)
[»] scaffold0308 (1 HSPs)
scaffold0308 (288-328)||(17764-17804)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 13878882 - 13879063
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  13878882 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagcaagtttaacattgctttgctagggaaatg 13878981  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13878982 gtgttggcggttgttagttgatagagaggggttatggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 13879063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 211 - 383
Target Start/End: Complemental strand, 25091122 - 25090951
Alignment:
Q  211 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcg 310  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||| |||| ||||||||||||||| |||    
T  25091122 ttggttggcattctttatgtttgaggagggagtatggggt-ttgggtgttaggagattgagagagtttaacattgctttgttagggaaatggtgttagcg 25091024  T
Q  311 gttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  25091023 gttgttagttgatagagaggggttgtggcgtagggtgttggtggctatgtatggtgtggcggatggtggtttg 25090951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 20825042 - 20824863
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggt 303  Q
    |||||||||||||||  |||| |||| ||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| |||| | ||||||||||    
T  20825042 tcgtgggttggttggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaatggt 20824943  T
Q  304 gttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| || ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| |||||||||||||    
T  20824942 gttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttg 20824863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 17700220 - 17700044
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    |||||||||||   ||||||||||||||||||||||||||| |||||||||||  | || ||||| ||||||||||||| |||| | |||||||||||||    
T  17700220 tgggttggttgaagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgtt 17700121  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| ||||||||||||| |  || || ||| |||| |||||  ||||||||||||| ||| | ||||||||||||    
T  17700120 ggcggctgttagttgataggggaggtttgtggagtagggtgttcttggctaggtatggagtgacagatggtggtttg 17700044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 37434359 - 37434477
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| |||| | || ||||||||||    
T  37434359 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttgggaaaatggtgtt 37434458  T
Q  307 ggcggttgttagttgatag 325  Q
    ||||| |||||||||||||    
T  37434459 ggcggctgttagttgatag 37434477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 207 - 362
Target Start/End: Original strand, 42176955 - 42177110
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  |||||||||| |||||||||||||||| ||| || ||||| |  | ||||| ||||||||||||  |||| | | |||||| ||||    
T  42176955 tgggttggttggagttctttgtgtatgaggagggagtatggagggatgagtgttagggggttgagagagtttaacattcctttgttggagaaatgatgtt 42177054  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtat 362  Q
    | ||||||||||||||||| || || || |||||||| ||||||||||||||||||    
T  42177055 gacggttgttagttgatagggatggtttgtggcgtagggtgttggtggctaggtat 42177110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 224 - 376
Target Start/End: Complemental strand, 43271159 - 43271008
Alignment:
Q  224 tttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgat 323  Q
    |||||||||||||||||||||||| || ||||||||| | || ||||| ||||||||||||    | || ||||||||||||||||||||||||| ||||    
T  43271159 tttgtgtttgaggagggagtatggagg-ttgggtgttaggaggttgagagagtttaacatttccctactggggaaatggtgttggcggttgttagatgat 43271061  T
Q  324 agagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    |  |  || || ||| |||| |||||| |||||||||||||||||||||||||    
T  43271060 atgggtggtttgtggtgtagggtgttgatggctaggtatggtgtggcggatgg 43271008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 41664763 - 41664944
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  41664763 tatcttgggttaggtgggatactttgagtatgaggaaggagtatggagggttgggggttacgaggttgagagagtttaacattgctttgttgggtaaatg 41664862  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||| | || || ||||  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  41664863 gtgttggcggttgttattggagagggaggctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttg 41664944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 7925131 - 7924950
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  7925131 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatg 7925032  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  7925031 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 7924950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 8300527 - 8300367
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||||||||| |||||||| | ||    
T  8300527 ctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgttattgga 8300428  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  8300427 gagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 8300367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 32267277 - 32267184
Alignment:
Q  224 tttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgtta 317  Q
    |||| ||||| ||| ||||||||| |||||||| |||   |||||||| ||||||||||| | |||| | || |||||||||||||||||||||    
T  32267277 tttgagtttgcggaaggagtatggagggttgggggttacgagattgagagagtttaacatagctttgttgggtaaatggtgttggcggttgtta 32267184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 9923325 - 9923165
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| ||||||||| ||||||||| |||||||| |||   || ||||| ||||||||  | | |||| | |  ||||||||||||||||||||| | ||    
T  9923325 ctttgagtttgaggaaggagtatggagggttgggggttacgaggttgagagagtttaatttagctttgttggataaatggtgttggcggttgttattgga 9923226  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     |  || |  || ||| | |  |||||||||||||||||||||||||||||||| ||||||    
T  9923225 gaaggaagctttgtggagaaaggtgttggtggctaggtatggtgtggcggatggaggtttg 9923165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 23942761 - 23942700
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    ||||||||  ||| ||| ||||| |||||||||||| ||||||||||||||||||| |||||    
T  23942761 gagtttaatgttgctttactaggtaaatggtgttggaggttgttagttgatagagaagggtt 23942700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 377
Target Start/End: Complemental strand, 8902482 - 8902397
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggt 377  Q
    |||| ||||||||||||||| |||||||||||||||  || || |||  ||| ||||| |||||| | ||||||| || |||||||    
T  8902482 taggaaaatggtgttggcggatgttagttgatagagctggcttgtggtatagggtgttagtggctcgttatggtgaggaggatggt 8902397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 24794454 - 24794366
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagag 327  Q
    ||||| ||| |||||||| ||| | |||||||| ||||||||  ||| |||| |||| |||||||||||| || |||| || |||||||    
T  24794454 ggagtctggagggttgggggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 24794366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 44082487 - 44082539
Alignment:
Q  282 attgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    |||| ||| ||||| |||||||||||| || |||||||||||||||| |||||    
T  44082487 attgctttactaggtaaatggtgttggaggatgttagttgatagagaagggtt 44082539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 206 - 383
Target Start/End: Complemental strand, 27796225 - 27796048
Alignment:
Q  206 gtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27796225 gtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagcaagtttaacattgctttgctagggaaatggtgt 27796126  T
Q  306 tggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27796125 tggcggttgttagttgatagagaggggttatggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 27796048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 10780941 - 10780765
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||  | || ||||| ||||||||||||| |||| | |||||||||||||    
T  10780941 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgtt 10780842  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| ||||||||||||||||||    
T  10780841 ggcggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggagtggcggatggtggtttg 10780765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 383
Target Start/End: Complemental strand, 33170400 - 33170222
Alignment:
Q  205 cgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtg 304  Q
    ||||| || ||||| ||||||| |||||||||| ||||||||| ||| |||||||| | || ||||| |||||||| |||| |||| |||| ||||||||    
T  33170400 cgtggattagttggaattctttatgtttgaggaaggagtatggagggatgggtgttaggagtttgagggagtttaatattgctttgttaggaaaatggtg 33170301  T
Q  305 ttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| |||||||||| || ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  33170300 ttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtggtttg 33170222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 8299579 - 8299758
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggt 303  Q
    |||||||||||||||  |||| |||| ||||||||||||||||| |||||||||||| | || ||| | ||||||||||||| |||| | ||||||||||    
T  8299579 tcgtgggttggttggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggt 8299678  T
Q  304 gttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| || ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| |||||||||||||    
T  8299679 gttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttg 8299758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 376
Target Start/End: Original strand, 27165370 - 27165534
Alignment:
Q  212 tggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcgg 311  Q
    ||||||| ||||||| |||||||||| ||||||||| ||| |||||||| | || |||||  ||||||||||||  ||||| ||||||||||||||||||    
T  27165370 tggttggaattctttatgtttgaggaaggagtatggagggatgggtgttaggaggttgagaaagtttaacattgcattgctggggaaatggtgttggcgg 27165469  T
Q  312 ttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    |||||||| ||||| || ||||| | |||||  ||||||||||||||||||| ||||| ||||||    
T  27165470 ttgttagtagatagggaagggttgttgcgtaaggtgttggtggctaggtatgttgtggaggatgg 27165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 25856836 - 25857008
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggt 303  Q
    ||||||||||| |||  |||| |||| ||||||||||||||||| |||||||||||| | || ||| | ||||||||||||| |||| | ||||||||||    
T  25856836 tcgtgggttgggtggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggt 25856935  T
Q  304 gttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    ||| | || ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| ||||||    
T  25856936 gttagaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatgg 25857008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 42928846 - 42928695
Alignment:
Q  232 tgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggg 331  Q
    |||||| ||||||||| ||| |||||||| | || ||||| |||||||| |||| |||| | || || ||||||||||| |||||| | ||||| || |     
T  42928846 tgaggaaggagtatggagggatgggtgttaggaggttgagagagtttaatattgctttgttgggaaagtggtgttggcgattgttaatagatagggaagc 42928747  T
Q  332 gttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     |||||| |||| ||||||||||||||||||| |||||||||||| ||||||    
T  42928746 tttatggtgtagggtgttggtggctaggtatgatgtggcggatggaggtttg 42928695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 23239128 - 23238947
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| ||||| ||| ||||||||| |||||||| |||   |||||||| ||||| ||||||| |||| | || |||||    
T  23239128 tatcttgggttaggtgggatactttgagtttgcggaaggagtatggagggttgggggttacgagattgagggagttcaacattgctttgttgggtaaatg 23239029  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||| ||||||||| | || || ||    || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  23239028 gtgttgacggttgttattggagagggaatctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttg 23238947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 42514465 - 42514291
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || ||||     
T  42514465 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatt 42514366  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| ||||||    
T  42514365 gtgttggaggttgttattagagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatgg 42514291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 28535213 - 28535251
Alignment:
Q  345 gtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  28535213 gtgttggtggctaggtatggtgtggcggatggaggtttg 28535251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 30731730 - 30731824
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgtta 317  Q
    ||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||||||||| ||||||||    
T  30731730 ctttgagtatgaggaaggagtatggagggttgggagttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 30731824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 27116598 - 27116683
Alignment:
Q  232 tgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgtta 317  Q
    |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||||||||| ||||||||    
T  27116598 tgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 27116683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 30509527 - 30509568
Alignment:
Q  287 tttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  30509527 tttgctagggaaatggtgttggaggttgttagtagatagaga 30509568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 30549867 - 30549908
Alignment:
Q  287 tttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  30549867 tttgctagggaaatggtgttggaggttgttagtagatagaga 30549908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 38358175 - 38358086
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    ||||| ||| || ||||| ||| | |||||||  |||||||| |||| ||| ||||| |||||||||||| || ||||||||||||||||    
T  38358175 ggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatagaga 38358086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 22174460 - 22174542
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggc 355  Q
    ||||||||||| | |||| |||| | |||||||||| ||||||| || |||||||  |||||||||  ||| |||||||||||    
T  22174460 gagtttaacatagctttgttaggtagatggtgttggaggttgttggtggatagaggtgggttatggtatagagtgttggtggc 22174542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 23256032 - 23256078
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||||    
T  23256032 taggtaaatggtgttggaggttgttggttgataaagaggggttatgg 23256078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 31642113 - 31642075
Alignment:
Q  345 gtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  31642113 gtgttggtggctagatatggtgtggcggatggaggtttg 31642075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 35983329 - 35983367
Alignment:
Q  345 gtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  35983329 gtgttggtggctaggtatggtgaggcggatggaggtttg 35983367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 54482554 - 54482735
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  54482554 tatcgtgggttgggtggcattctttgtgtttgaggagggagtatggggggctgggtgttcggagattgagcgagtttaacattgctttgctagggaaatg 54482653  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  54482654 gtgttggcggttgttagttgatagagaggggttatggcgtagggtgttggtggctaggtatggtgtggcagatggtggtttg 54482735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 48312834 - 48312658
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  48312834 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagagagtttaacattgctttgctagggaaatggtgtt 48312735  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  48312734 agcggttgttagttgatagagaggggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 48312658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 211 - 383
Target Start/End: Original strand, 55725110 - 55725282
Alignment:
Q  211 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcg 310  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||| ||| |||| ||||||||||||||||| |    
T  55725110 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaactttgctttgttagggaaatggtgttggag 55725209  T
Q  311 gttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||||| |||||||| || ||||||  ||| ||||||||||||||||||||||||| |||||||||||||    
T  55725210 gttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttg 55725282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 46146422 - 46146241
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||||||| || ||||| ||||||| |||||||||| |||||| || ||| |||||||| | |||||||| | ||||||||||| |||| |||| |||||    
T  46146422 tatcgtggattagttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagattgagggggtttaacattgctttgttaggaaaatg 46146323  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||  |||||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||  |||||||||||||||    
T  46146322 gtgttgaaggttgttagtagagagagatgggttgtggcgtagggtgttggtggctagatatggtgcagcggatggtggtttg 46146241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 19755991 - 19755831
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| ||||||||| ||||||||||||  ||| ||||| ||||||||||||| |||| | |  ||||||||||||||||||||| | ||    
T  19755991 ctttgagtatgaggaaggagtatggagggttgggtgttacaaggttgagagagtttaacattgctttgttggataaatggtgttggcggttgttattgga 19755892  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     || || |  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  19755891 gagggaagctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttg 19755831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 383
Target Start/End: Original strand, 19783815 - 19783975
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| ||||||||| ||||||||||||  ||| ||||| ||||||||||||| |||| | |  ||||||||||||||||||||| | ||    
T  19783815 ctttgagtatgaggaaggagtatggagggttgggtgttacaaggttgagagagtttaacattgctttgttggataaatggtgttggcggttgttattgga 19783914  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     || || |  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  19783915 gagggaagctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttg 19783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 11586683 - 11586774
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| ||||||||||||||||||||||||||||  || ||||| ||| |||  ||||| |||||||||||||||||||||||||| ||||||    
T  11586683 taggaaaatggtgttggcggttgttagttgataaggaagggttgtggtgtaaggtgttagtggctaggtatggtgtggcggatggaggtttg 11586774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 19733402 - 19733523
Alignment:
Q  228 tgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagag 327  Q
    |||||||||| |||||| |  ||| |||||||| | |||||||| |||||||||| ||||||| |||| |||||||||||| |||||||| | || ||||    
T  19733402 tgtttgaggaaggagtacgaagggatgggtgttaggagattgagggagtttaacactgttttgttaggaaaatggtgttggaggttgttaatagagagag 19733501  T
Q  328 aggggttatggcgtagtgtgtt 349  Q
    | ||||| |||||||| |||||    
T  19733502 atgggttgtggcgtagggtgtt 19733523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 23641986 - 23642167
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  23641986 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatg 23642085  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  23642086 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 23642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 23647644 - 23647825
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | |  |||||    
T  23647644 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttggataaatg 23647743  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  23647744 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 23647825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 47419549 - 47419368
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| || |||||| ||||| ||| |||||||| ||||  ||  |||| ||||||||||||| |||| |||| |||||    
T  47419549 tatcttgggttagatgggatactttgagtatgaggaaggagtttggagggttgggggttcagaggctgagggagtttaacattgctttgttaggtaaatg 47419450  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||  | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  47419449 gtgttggaggttgttgttggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 47419368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 5789585 - 5789668
Alignment:
Q  300 tggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||||| |||||||||| || || || ||||| |||||||  ||||| ||||||||||||||||||| || ||| ||||||    
T  5789585 tggtgttggaggttgttagtagagagtgaagggttgtggcgtaaggtgttagtggctaggtatggtgtggagggtggaggtttg 5789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 19115110 - 19115058
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatag 325  Q
    |||||||| |||| |||  ||||||||||||||||| |||||||||| |||||    
T  19115110 gagtttaatattgctttattagggaaatggtgttggaggttgttagtggatag 19115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 42952937 - 42953025
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagag 327  Q
    ||||| ||| |||||||| ||| | |||||||| ||||||||  ||| |||| |||| |||||||||||| || |||| || |||||||    
T  42952937 ggagtctggagggttgggggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 42953025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 48569436 - 48569615
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggt 303  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||||||| ||||||||||||| |||||||| ||||||||    
T  48569436 tcgtggattggttgacattctttgtgtttgaggagggagtatggagggctgggtgttaggagattgagagagtttaacattgctttgctagagaaatggt 48569535  T
Q  304 gttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  48569536 gttggcggttgttagttgatagagatgggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 48569615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 207 - 383
Target Start/End: Original strand, 12341655 - 12341831
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||  | || ||||| ||||||||||||| |||| | |||||||||||||    
T  12341655 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgtt 12341754  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| |||||||||||||    
T  12341755 ggcggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttg 12341831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 19891417 - 19891241
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| |||||||| | || ||||| ||||||||| |||  ||| |  ||||||||||||    
T  19891417 tgggttggttggagttctttgtgtttgaggagggagtatggagggatgggtgttaggaggttgagagagtttaactttgcattgttgaggaaatggtgtt 19891318  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| |||||||||||||| |  || || |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  19891317 ggcgattgttagttgatagggttggtttgtggcgtagggtgttggtggctaggtatggtgtggcagatggtggtttg 19891241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 383
Target Start/End: Original strand, 962561 - 962739
Alignment:
Q  205 cgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtg 304  Q
    ||||| || ||||| ||||||| |||||||||| |||||| || ||| |||||||| | || ||||| |||||||| |||| |||| |||| ||||||||    
T  962561 cgtggattagttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagtttgagggagtttaatattgctttgttaggaaaatggtg 962660  T
Q  305 ttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| |||||||||| || ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  962661 ttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtggggcggatggtggtttg 962739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 230 - 383
Target Start/End: Complemental strand, 3141568 - 3141415
Alignment:
Q  230 tttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagag 329  Q
    |||||||| ||||||| | ||| |||||||| | |||||||| |||||||||| || |||| |||| |||||||||||| |||||||||| || |||||     
T  3141568 tttgaggaaggagtatagagggatgggtgttaggagattgagggagtttaacactgctttgttaggaaaatggtgttggaggttgttagtagagagagat 3141469  T
Q  330 gggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||| |||||||| ||||| |||||||||||||||| ||||||||||| ||||    
T  3141468 gggttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtgatttg 3141415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 34332210 - 34332391
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  34332210 tatcttgggttagatgggatactttgagtatgaggaaggagtatggagggttgggggttacgaggttgagagagtttaacattgctttgttgggtaaatg 34332309  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||| | || || ||||  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  34332310 gtgttggcggttgttattggagagggaggctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttg 34332391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 2365022 - 2364841
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  2365022 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatg 2364923  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  2364922 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 2364841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 367
Target Start/End: Complemental strand, 16179680 - 16179527
Alignment:
Q  214 gttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggtt 313  Q
    ||||| ||||| | ||| |||||| ||||||||  |||||||| ||| | || ||||| ||||||||  | | |||| | ||||||||||||||| ||||    
T  16179680 gttggaattctctatgtctgaggaaggagtatgaagggttgggagttaggaggttgagggagtttaatgtcgctttgttggggaaatggtgttggaggtt 16179581  T
Q  314 gttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgt 367  Q
    |||||| || || || ||||| |||||||  ||||| ||||| |||||||||||    
T  16179580 gttagtagagagtgaagggttgtggcgtaaggtgttagtggcgaggtatggtgt 16179527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 42674896 - 42674966
Alignment:
Q  264 agattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    |||||||  |||||||| |||||||| ||||| |||||||||||| || |||||||||||||||| |||||    
T  42674896 agattgaaggagtttaatattgttttactaggtaaatggtgttggaggatgttagttgatagagaagggtt 42674966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 361
Target Start/End: Original strand, 17077747 - 17077852
Alignment:
Q  256 gtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggc 355  Q
    ||||||| || ||||| |||||||||| ||||||| | || |||||||||| | |||||||||| || ||||| ||||| |||||||  ||  |||||||    
T  17077747 gtgttcggaggttgagggagtttaacactgttttgttgggaaaatggtgttagaggttgttagtagagagagatgggttgtggcgtaaggttctggtggc 17077846  T
Q  356 taggta 361  Q
    ||||||    
T  17077847 taggta 17077852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 20531538 - 20531627
Alignment:
Q  294 gggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||||||||||||| |||||| ||||||| || || || |||||||  |||||||| |||||||||| || || |||||| ||||||    
T  20531538 gggaaatggtgttggcgtttgttaattgatagggaaggtttgtggcgtaaggtgttggtagctaggtatgctgcggaggatggaggtttg 20531627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 20367205 - 20367162
Alignment:
Q  288 ttgctagggaaatggtgttggcggttgttagttgatagagaggg 331  Q
    |||||||| || |||||||||| |||||||||||||||||||||    
T  20367205 ttgctaggtaagtggtgttggcagttgttagttgatagagaggg 20367162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 19919645 - 19919739
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgtta 317  Q
    ||||| || |||||| ||||||||| |||||||| |||   || ||||| |||||||||||||  ||| | || |||||||||||| ||||||||    
T  19919645 ctttgggtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgccttgttgggcaaatggtgttggaggttgtta 19919739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 36709584 - 36709523
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    |||||||| |||| ||| ||||| |||||||||||| || |||||||||| ||||| |||||    
T  36709584 gagtttaatattgctttactaggtaaatggtgttggaggatgttagttgacagagaagggtt 36709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 52907699 - 52907763
Alignment:
Q  291 ctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggc 355  Q
    |||||||| ||||||||| |  |||||||||||||||||||||| |||  ||| ||||| |||||    
T  52907699 ctagggaagtggtgttggagaatgttagttgatagagaggggttgtggtatagggtgttagtggc 52907763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 33515604 - 33515783
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggt 303  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||| || ||||||||||||| |||||||||||||||||    
T  33515604 tcgtggattggttgccattctttgtgtttgaggagggagtatggggggctgggtgttaggagattaagagagtttaacattgctttgctagggaaatggt 33515703  T
Q  304 gttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33515704 gttgacggttgttagttgatagagatgggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 33515783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 12646257 - 12646092
Alignment:
Q  211 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcg 310  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||| |||||||| |||| |||||||||||| |    
T  12646257 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaactttgttttgttaggaaaatggtgttggag 12646158  T
Q  311 gttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    ||||||||| |||||||| || || |||  ||| ||||||||||||||||| ||||||| ||||||    
T  12646157 gttgttagtagatagagatggattgtggtatagggtgttggtggctaggtaaggtgtggaggatgg 12646092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 14440484 - 14440308
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| | || | | |||||||||||    
T  14440484 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctctgttggtgaaatggtgtt 14440385  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||| |||||||||||||| |  || || ||| |||| |||||| |||||||||||||| |||||||||||||||||    
T  14440384 ggcgtttgttagttgataggggtggtttgtggtgtagggtgttgttggctaggtatggtatggcggatggtggtttg 14440308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 43659093 - 43659033
Alignment:
Q  88 gtgaccatattacatagatgaaaaatatcaattaccctttagattgcttattcatcattat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43659093 gtgaccatattacatagatgaaaaatatcaattaccctttagattgcttattcatcattat 43659033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 383
Target Start/End: Complemental strand, 28253428 - 28253284
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    ||||||||| |||||||||||  | || ||||| ||||||||  | |   || |||| |||||||||||||| |||||||| || || || |||||||||    
T  28253428 ggagtatggagggttgggtgtaaggaggttgagagagtttaatttagccctgttaggaaaatggtgttggcgtttgttagtggagagggaagggttatgg 28253329  T
Q  339 cgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||  ||||||  |||||||||||||||||||||||| ||||||    
T  28253328 cgtaaggtgttgagggctaggtatggtgtggcggatggaggtttg 28253284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 37445746 - 37445674
Alignment:
Q  294 gggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    |||||||||||||||||  ||||||||||||| || ||||| |||||||| ||||||||||||||||||||||    
T  37445746 gggaaatggtgttggcgtctgttagttgatagtgatgggttctggcgtagggtgttggtggctaggtatggtg 37445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 359
Target Start/End: Complemental strand, 37437688 - 37437578
Alignment:
Q  249 gggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgt 348  Q
    |||||||| ||| |||  ||||| ||||||||||  | |||| | |||||||||||||||||  ||||||||||||| || ||||| |||||  | ||||    
T  37437688 gggttgggggttagaaagttgagggagtttaacaccgctttgttggggaaatggtgttggcgtctgttagttgatagtgatgggttctggcgntgagtgt 37437589  T
Q  349 tggtggctagg 359  Q
    |||||||||||    
T  37437588 tggtggctagg 37437578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 35488511 - 35488450
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    ||||||||  ||| ||| ||||| |||||||||||| ||||||||||||||||||| |||||    
T  35488511 gagtttaatgttgctttactaggtaaatggtgttggaggttgttagttgatagagaagggtt 35488450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 8065728 - 8065788
Alignment:
Q  274 agtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    |||||||  ||| ||| ||||| ||||| |||||| ||||||||||||||||||| |||||    
T  8065728 agtttaatgttgctttactaggtaaatgatgttggaggttgttagttgatagagaagggtt 8065788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 211 - 383
Target Start/End: Complemental strand, 280 - 108
Alignment:
Q  211 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcg 310  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| |||| ||||||||||||||||| |    
T  280 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttagggaaatggtgttggag 181  T
Q  311 gttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||||| |||||||| || || |||||||  |||||||||| |||||||||||||| |||||||||||||    
T  180 gttgttagtagatagagatggattgtggcgtaaggtgttggtggttaggtatggtgtggaggatggtggtttg 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 211 - 383
Target Start/End: Original strand, 10576654 - 10576826
Alignment:
Q  211 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcg 310  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||| | || ||||| |||||||||||||||||| | |||||||||||||||||    
T  10576654 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgttttgttggggaaatggtgttggcg 10576753  T
Q  311 gttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    | ||||||||||||| |  || ||  || |||| |||||| ||||||||||||||||||||||||||||||||    
T  10576754 gctgttagttgataggggaggtttgcggagtagggtgttgttggctaggtatggtgtggcggatggtggtttg 10576826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 207 - 383
Target Start/End: Original strand, 17605734 - 17605910
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| |||| | |||||||||||||    
T  17605734 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaatggtgtt 17605833  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    || || ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| |||||||||||||    
T  17605834 ggtggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttg 17605910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 13938463 - 13938283
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||||||| || ||||| ||||||| |||||||||| |||||| || ||| |||||||| | |||||||| ||||||||||||| |||| || | |||||    
T  13938463 tatcgtggattagttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagattgagagagtttaacattgctttgttaagaaaatg 13938364  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||||| || |||||  |||| |||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  13938363 gtgttggaggttgttagtagagagaga-tggttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtggtttg 13938283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 21629522 - 21629691
Alignment:
Q  207 tgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgtt 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||||| |||| | ||||||| |||||    
T  21629522 tgggttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaattgtgtt 21629621  T
Q  307 ggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    ||||| |||||||||||||    || || ||| |||| |||||| ||||||||||||| |||| ||||||    
T  21629622 ggcggctgttagttgataggtgaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatgg 21629691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 210 - 383
Target Start/End: Original strand, 20882435 - 20882610
Alignment:
Q  210 gttggttggcattctt-tgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttgg 308  Q
    ||||||||| |||||| | | |||||||||||||||||| ||| |||||||| | || ||||| ||||||||||||| |||| | | |||||||||||||    
T  20882435 gttggttggaattcttctatatttgaggagggagtatggagggatgggtgttaggaggttgagagagtttaacattgctttgttggagaaatggtgttgg 20882534  T
Q  309 cggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtat-ggtgtggcggatggtggtttg 383  Q
    ||||||||||||| ||| || || ||    ||||| |||||||| |||||||||  ||||||||||||||||||||    
T  20882535 cggttgttagttgttagggatggtttgcaacgtagggtgttggtcgctaggtataagtgtggcggatggtggtttg 20882610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 17577113 - 17577294
Alignment:
Q  204 tcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaaga--ttgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||||||||||||||  |||| |||| |||||||||||| |||| ||||||||||||  | ||  ||| | ||||||||||||| |||| | ||||||||    
T  17577113 tcgtgggttggttggagttctgtgtgcttgaggagggagcatggagggttgggtgttataggaggttgcgagagtttaacattgctttgttggggaaatg 17577212  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| || ||||||||||||| |  || || ||| |||| |||||| ||||||||||||| |||| ||||| |||||||    
T  17577213 gtgttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatgatggtttg 17577294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 383
Target Start/End: Original strand, 18681999 - 18682150
Alignment:
Q  232 tgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggg 331  Q
    |||||| |||||||   ||||||||| |||| || ||||| || ||||||| || |||| |||| |||||||||||| ||||||||||||| ||||||||    
T  18681999 tgaggaaggagtataaagggttgggttttcggaggttgagggattttaacactgctttgttaggaaaatggtgttggaggttgttagttgacagagaggg 18682098  T
Q  332 gttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||  ||||||||||| |||||||||  || |||||| ||||||    
T  18682099 gttatggtgtaaggtgttggtggccaggtatggttcggaggatggaggtttg 18682150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 373
Target Start/End: Original strand, 14372423 - 14372557
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    ||||||||| |||||||||||| |||| || || ||||||||  | |  ||| |||| ||||||||| |||| |||||||| || || || |||||||||    
T  14372423 ggagtatggagggttgggtgttagaaggttaagagagtttaatttagccttgttaggaaaatggtgtaggcgtttgttagtggagagggaagggttatgg 14372522  T
Q  339 cgtagtgtgttggtggctaggtatggtgtggcgga 373  Q
    ||||  |||||||||||||||||||||||||||||    
T  14372523 cgtaaggtgttggtggctaggtatggtgtggcgga 14372557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 383
Target Start/End: Original strand, 24766830 - 24766990
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| ||||||||| |||||||| |||   || || || ||||||||  ||| |||| |||| ||||||||||||||||||||| | ||    
T  24766830 ctttgagtctgaggaaggagtatggagggttgggggttacgaggttaagagagtttaatgttgctttgttaggtaaatggtgttggcggttgttactaga 24766929  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||| || |  || ||||| |  |||||||||||||||||||||||||||||||| ||||||    
T  24766930 tagggaagctttgtggcgaaaggtgttggtggctaggtatggtgtggcggatggaggtttg 24766990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 15956482 - 15956560
Alignment:
Q  297 aaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    ||||||| ||||||||||||| ||||||||||  | || |||||||  ||||||||||||||||||||||||||||||||    
T  15956482 aaatggttttggcggttgttaattgatagagaaag-ttgtggcgtaaggtgttggtggctaggtatggtgtggcggatgg 15956560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 2554351 - 2554170
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| || |||||| ||||||||| |||||| | |||   || ||||| ||||||||||||| |||| | || |||||    
T  2554351 tatcttgggttaggtgggatactttgagtatgaggaaggagtatggagggttgagggttacgaggttgagagagtttaacattgctttgttgggtaaatg 2554252  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||| ||||||| | || || || |  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  2554251 gtgttggcagttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttg 2554170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 18588996 - 18588930
Alignment:
Q  300 tggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||||||||| ||||||||||||||||| |||||||||  | | |||||||||||||| |||||||    
T  18588996 tggtgttggcgtttgttagttgatagagacgggttatggtatcgagtgttggtggctagatatggtg 18588930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 10919957 - 10920023
Alignment:
Q  300 tggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||||||| || |||| |||||||||| |||||| |||  ||| |||||||| |||||||||||||    
T  10919957 tggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtg 10920023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 21549531 - 21549469
Alignment:
Q  264 agattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgataga 326  Q
    |||||||  |||||||| |||| ||| ||||| |||||||||||| || ||||||||||||||    
T  21549531 agattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgataga 21549469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 33805439 - 33805399
Alignment:
Q  288 ttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  33805439 ttgctagggaaatggtgttggaggatgttagtggatagaga 33805399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 244 - 383
Target Start/End: Complemental strand, 31423305 - 31423166
Alignment:
Q  244 atggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtag 343  Q
    |||| ||| |||||||| | || ||||| |||||||||| || |||| | |||||||||||||||||||||||||||||||| || || || ||||||||    
T  31423305 atggagggatgggtgttaggaggttgagagagtttaacagtgctttgttggggaaatggtgttggcggttgttagttgatagggatggtttgtggcgtag 31423206  T
Q  344 tgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     ||||||||||||||| |||||||||||||||||||||||    
T  31423205 ggtgttggtggctaggcatggtgtggcggatggtggtttg 31423166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 37255411 - 37255322
Alignment:
Q  294 gggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||| ||||||||||||||||||||||| || || ||  ||||||| |||||||||||||||||||||||||||||||||||||||    
T  37255411 gggaaatgatgttggcggttgttagttgatagggatggtttggggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttg 37255322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 11276643 - 11276824
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| ||||| ||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  11276643 tatcttgggttaggtgggatactttgagtttgcggaaggagtatggagggttgggggttacgaggttgagggagtttaacattgctttggtgggtaaatg 11276742  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||| | || || || |  || ||| | |  ||||| |||||||||||||||||||||||||| ||||||    
T  11276743 gtgttggcggttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttg 11276824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 4937523 - 4937704
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  4937523 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatg 4937622  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  4937623 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 4937704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 383
Target Start/End: Original strand, 234854 - 235014
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| ||||||||| |||||||| |||   || ||| | |||||||| |||| |||| | || |||||||||||| |||||||| | ||    
T  234854 ctttgagtatgaggaaggagtatggagggttgggagttacgaggttgcgagagtttaatattgctttgttgggtaaatggtgttggtggttgttattgga 234953  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     ||||| |  || ||||| |  ||||| |||||||||||||||||||||||||| ||||||    
T  234954 gagagaagctttgtggcgaaaggtgttagtggctaggtatggtgtggcggatggaggtttg 235014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 376
Target Start/End: Original strand, 39931017 - 39931165
Alignment:
Q  228 tgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagag 327  Q
    |||||||| | ||||||||| |||||||| ||| | || ||||| ||| |||| |||| | || |||| |||||||||||||| |||||||| ||  | |    
T  39931017 tgtttgagaaaggagtatggagggttgggggttaggaggttgagggagcttaatattgctctgttaggtaaatggtgttggcgtttgttagtggagggtg 39931116  T
Q  328 aggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
    | |  || ||| |||| ||||||||||||||||||||||||| ||||||    
T  39931117 atgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgg 39931165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 29968719 - 29968538
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| || ||||| || || ||| ||||||||| |||||||| |||   |||||||| |||||||| |||| |||| | || |||||    
T  29968719 tatcttgggttaggtgggatactttgagtctgcggaaggagtatggagggttgggggttacgagattgagggagtttaatattgctttgttgggtaaatg 29968620  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    |||||||||||||||| | || || || |  || ||| | |  ||||| |||||||||||||| ||||||||||| ||||||    
T  29968619 gtgttggcggttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggcgtggcggatggaggtttg 29968538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 17721359 - 17721199
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| ||||||||| ||||||||| |||||||| |||   || ||||| ||||||||  | | |||| | || ||||||||||||||||||||| | ||    
T  17721359 ctttgagtttgaggaaggagtatggagggttgggggttacgaggttgagagagtttaatttagctttgttgggtaaatggtgttggcggttgttattgga 17721260  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     |  || |  || ||| | |  |||||||||||||||||||||||||||||||| ||||||    
T  17721259 gaaggaagctttgtggagaaaggtgttggtggctaggtatggtgtggcggatggaggtttg 17721199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 36364235 - 36364089
Alignment:
Q  228 tgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagag 327  Q
    |||||||| | ||||||||| |||||||| ||| | |||||||| |||||||| |||| |||| |  | |||||||||||||| |||||||| ||  |      
T  36364235 tgtttgagaaaggagtatggtgggttgggggttaggagattgagggagtttaatattgctttgttgagtaaatggtgttggcgtttgttagtggagggta 36364136  T
Q  328 aggggttatggcgtagtgtgttggtggctaggtatggtgtggcggat 374  Q
    | || ||  ||||||| |||||||||||||| || ||||||| ||||    
T  36364135 atggtttggggcgtagggtgttggtggctagttaaggtgtggaggat 36364089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 18768142 - 18768021
Alignment:
Q  213 ggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggt 312  Q
    |||||| ||||||||||||  |  | ||||| ||| || ||||| ||| | |||||||  |||||||| |||| ||| ||||| |||||||||||| ||     
T  18768142 ggttgggattctttgtgttctaaaaaggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggagga 18768043  T
Q  313 tgttagttgatagagaggggtt 334  Q
    |||||||||||||||| |||||    
T  18768042 tgttagttgatagagaagggtt 18768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 383
Target Start/End: Complemental strand, 47877662 - 47877546
Alignment:
Q  267 ttgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||| |||||||| |||| |||| | |  ||||||||||||||||||||| | || || || |  || |||||    ||||||||||||||||||||||    
T  47877662 ttgagagagtttaatattgctttgttggataaatggtgttggcggttgttattggagagggaagctttgtggcgacaggtgttggtggctaggtatggtg 47877563  T
Q  367 tggcggatggtggtttg 383  Q
    |||||||||| ||||||    
T  47877562 tggcggatggaggtttg 47877546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 34457590 - 34457685
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggtt 334  Q
    |||| |||| || ||||| ||| | |||||||  |||||||| |||| ||| ||||| ||||||||||||  | |||||||||||||||| |||||    
T  34457590 ggagcatggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttgggtgatgttagttgatagagaagggtt 34457685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 20349622 - 20349544
Alignment:
Q  288 ttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||||||||||||||| |||  | |||| || ||||||||  ||||||||  ||| |||||||||||| |||||||||    
T  20349622 ttgctagggaaatggtgctggatgatgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtg 20349544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 5327437 - 5327372
Alignment:
Q  273 gagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    ||||||||  ||| ||| |||||||||||||||||| || ||||||| |||||||| || ||||||    
T  5327437 gagtttaatcttgctttactagggaaatggtgttggaggatgttagtggatagagaaggtttatgg 5327372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 17856388 - 17856348
Alignment:
Q  288 ttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  17856388 ttgctagggaaatggtgttggaggatgttagtggatagaga 17856348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 47622509 - 47622653
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    ||||||||| ||||||| |||| | || ||| | |||||||| || |   || |||| ||||| ||||| || |||||||||||||| || ||||||||     
T  47622509 ggagtatggagggttggctgttaggaggttgggagagtttaatatagccctgttaggaaaatgatgttgacgtttgttagttgatagggaagggttatga 47622608  T
Q  339 cgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||  ||||||||||||||||||||||||| |||||| ||||||    
T  47622609 cgtaaggtgttggtggctaggtatggtgtggtggatggaggtttg 47622653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 20987810 - 20987736
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||||||||||| ||| || |||| || |||||||| |||||||||| ||| |||||||||||| |||||||||    
T  20987810 tagggaaatggtgctggaggatgttggtggatagagaagggttatggcatagggtgttggtggctcggtatggtg 20987736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 6051348 - 6051167
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||  ||||||||||||| |||| | || |||||    
T  6051348 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgaaggagtttaacattgctttgttgggtaaatg 6051249  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | ||  | || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  6051248 gtgttggaggttgttattggagcgggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 6051167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 376
Target Start/End: Complemental strand, 35541758 - 35541605
Alignment:
Q  223 ctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttga 322  Q
    ||||| || |||||| | ||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||||||||| |||||||| | ||    
T  35541758 ctttgagtatgaggaagaagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgttattgga 35541659  T
Q  323 tagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatgg 376  Q
     || || |  || ||| | |  ||||| ||||||||||||||||||| ||||||    
T  35541658 gagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatgg 35541605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 33142698 - 33142761
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggc 355  Q
    |||| |||||||||||| ||||||||||||||||||| || || |||  ||| |||||||||||    
T  33142698 taggtaaatggtgttggaggttgttagttgatagagaaggcttgtggtatagggtgttggtggc 33142761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 49264396 - 49264503
Alignment:
Q  239 ggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatgg 338  Q
    ||||| ||| |||||||| ||| | || ||||| ||||||||| |||||||| |||| ||||||||||||  | |||| || |||||||  ||||| |||    
T  49264396 ggagtctggagggttgggggttaggaggttgagggagtttaactttgttttgttaggtaaatggtgttggaagatgttggtagatagagtagggttgtgg 49264495  T
Q  339 cgtagtgt 346  Q
     |||||||    
T  49264496 tgtagtgt 49264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 38070503 - 38070413
Alignment:
Q  276 tttaacattgttttgctagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    ||||| ||||||||  || | |||||||||||||||||||| || |||||||  ||||| |||  ||| || |||||||| ||||||||||    
T  38070503 tttaatattgttttattaagaaaatggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtg 38070413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 52692126 - 52692052
Alignment:
Q  292 tagggaaatggtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtg 366  Q
    |||| |||||||||||| || |||| || |||||||||||||| |||  ||| |||||||||||  |||||||||    
T  52692126 taggaaaatggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtg 52692052  T

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Target: scaffold0034 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 105238 - 105419
Alignment:
Q  202 tatcgtgggttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatg 301  Q
    |||| |||||| | ||| |||||||| || |||||| ||||||||| |||||||| |||   || ||||| ||||||||||||| |||| | || |||||    
T  105238 tatcttgggttaggtgggattctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatg 105337  T
Q  302 gtgttggcggttgttagttgatagagaggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
    ||||||| |||||||| | || || || |  || ||| | |  ||||| ||||||||||||||||||| |||||| ||||||    
T  105338 gtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttg 105419  T

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Target: scaffold0472 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 383
Target Start/End: Complemental strand, 3970 - 3816
Alignment:
Q  229 gtttgaggagggagtatggggggttgggtgttcgaagattgagcgagtttaacattgttttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    ||||| ||| ||||||||| |||||||  |||   |||||||| ||||||||||||| |||| | || ||||||||||||||||||||| | || || ||    
T  3970 gtttgcggaaggagtatggagggttggaggttacgagattgagggagtttaacattgctttgttgggtaaatggtgttggcggttgttattggagaggga 3871  T
Q  329 ggggttatggcgtagtgtgttggtggctaggtatggtgtggcggatggtggtttg 383  Q
     |  || ||| | |  ||||| |||||||||||||||||| ||||||| ||||||    
T  3870 tgctttgtggagaaaggtgttagtggctaggtatggtgtgacggatggaggtttg 3816  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 17804 - 17764
Alignment:
Q  288 ttgctagggaaatggtgttggcggttgttagttgatagaga 328  Q
    ||||||||||||||||||||| || ||||||| ||||||||    
T  17804 ttgctagggaaatggtgttggtggatgttagtggatagaga 17764  T

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