View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9274_high_1 (Length: 328)
Name: NF9274_high_1
Description: NF9274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9274_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 51 - 319
Target Start/End: Complemental strand, 39479900 - 39479630
Alignment:
| Q |
51 |
cgggaaccaccatgagagtatcgtagagagattcttgatgattcattgttaagtcatgtttgaattttaaggtttgtgactctcacattcatgtggttag |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39479900 |
cgggaaccaccatgagagtatcgtagagagattcttgatgattcattgttaagtcatatttgaattttaaggtttgtgactctcacattcatgtggttag |
39479801 |
T |
|
| Q |
151 |
acagattcttcaaatttcattctattaattgcaaatttg----tatttaagagggaatgagacactcaatggcggacatttagttgtatatattgatgat |
246 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39479800 |
acggattcttcaaatttcattctattaattgcaaatttgtatatatttaagagggaatgagacactcaatggcggacatttagttttatatattgatg-- |
39479703 |
T |
|
| Q |
247 |
atgtccaacgagaatctaacattttagggnnnnnnnagacatttaattttatatttattgatattgatgtcca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39479702 |
atgtccaacgagaatctaacattttagggtttttttagacatttaattttatatttattgatattgatgtcca |
39479630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39479951 - 39479918
Alignment:
| Q |
1 |
aaatattctttacttagagataaaagcattggag |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39479951 |
aaatattctttacttagagataaaagcattggag |
39479918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University