View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9274_low_1 (Length: 585)
Name: NF9274_low_1
Description: NF9274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9274_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 2151743 - 2152119
Alignment:
| Q |
16 |
aaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaaggga |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2151743 |
aaaggttgcttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatggga |
2151842 |
T |
|
| Q |
116 |
actcnnnnnnnngttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatga |
215 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151843 |
actcaaaaaaaagatccgacgagtttccacaatgtctcttgtcacacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatga |
2151942 |
T |
|
| Q |
216 |
gaaataaattttcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151943 |
gaaataaattttcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaa |
2152042 |
T |
|
| Q |
307 |
atctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattttttatatat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2152043 |
atctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 2146333 - 2146433
Alignment:
| Q |
16 |
aaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaaggga |
115 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2146333 |
aaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaaggga |
2146432 |
T |
|
| Q |
116 |
a |
116 |
Q |
| |
|
| |
|
|
| T |
2146433 |
a |
2146433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
159 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
248 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
166 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 2142218 - 2142267
Alignment:
| Q |
26 |
tattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttga |
75 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2142218 |
tattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University