View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9275_low_2 (Length: 328)
Name: NF9275_low_2
Description: NF9275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9275_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 9996578 - 9996737
Alignment:
| Q |
85 |
aacttcataagttcattgcatgtaagctaaaagcaaaaa-tacaaattgaatacgtttcaaacacaacatattctaaaagaagttgcacataataggtat |
183 |
Q |
| |
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||||||| || |||||||||||||||||||||| |||| |||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
9996578 |
aacttcaaaacttcattgcatgtaagctaaaaggaaaacgtacaaattaaatacgattcagacacaacatattgtaaaagaagttgcacataataggtat |
9996677 |
T |
|
| Q |
184 |
ttaacataaaatcgactaaatacataacattttcatataacttcgttgaatgtaagttat |
243 |
Q |
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||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9996678 |
ttagcacaaaattgactaaatacataacattttcatataacttcgttgaatgtaagttat |
9996737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 10007563 - 10007722
Alignment:
| Q |
85 |
aacttcataagttcattgcatgtaagctaaaagcaaaaa-tacaaattgaatacgtttcaaacacaacatattctaaaagaagttgcacataataggtat |
183 |
Q |
| |
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||||||| || |||||||||||||||||||||| |||| |||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
10007563 |
aacttcaaaacttcattgcatgtaagctaaaaggaaaacgtacaaattaaatacgattcagacacaacatattgtaaaagaagttgcacataataggtat |
10007662 |
T |
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| Q |
184 |
ttaacataaaatcgactaaatacataacattttcatataacttcgttgaatgtaagttat |
243 |
Q |
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| T |
10007663 |
ttagcacaaaattgactaaatacataacattttcatataacttcgttgaatgtaagttat |
10007722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 9977456 - 9977620
Alignment:
| Q |
79 |
ggtctcaacttcataagttcattgcatgtaagctaaaagcaaaaatacaaattgaatacgtttcaaacacaacatattctaaaagaagttgcacataata |
178 |
Q |
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| T |
9977456 |
ggtcacaacttcataacttcattgcatgtaagctaaaagaaaaagtacaaattaaatacatttcagacacaacatattctaaaagaagttgcacacaaca |
9977555 |
T |
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| Q |
179 |
ggtatttaacataaaatcgactaaatacataacattttcatataacttcgttgaatgtaagttat |
243 |
Q |
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| T |
9977556 |
ggtatttagaacaaaatcgacgaaatacataatatcttcatataacttcgtcaaatgtaagttat |
9977620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 9985491 - 9985595
Alignment:
| Q |
139 |
tttcaaacacaacatattctaaaagaagttgcacataataggtatttaacataaaatcgactaaatacataacattttcatataacttcgttgaatgtaa |
238 |
Q |
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| T |
9985491 |
tttcagacacaacatattctaaaagaacttgcacataataggtatttagcacaaaatggtctaaatacataacattttcatataattttgttaaatgtaa |
9985590 |
T |
|
| Q |
239 |
gttat |
243 |
Q |
| |
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||||| |
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| T |
9985591 |
gttat |
9985595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 9977009 - 9977082
Alignment:
| Q |
7 |
attttaagagcaaaacgaatttaattaattcaaaaatgagagaagtacaaatagtaattaacctaaaggttgggt |
81 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||| | |||||||||||||||| |
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| T |
9977009 |
attttaagagcaaaacgaatttgattagttcaaaa-tgagagaggtacaaatagtagtaaacctaaaggttgggt |
9977082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9996139 - 9996218
Alignment:
| Q |
1 |
ttttgcattttaagagcaaaacgaatttaattaattcaaaaatgagagaagtacaaatagtaattaacctaaaggttgggt |
81 |
Q |
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||||| |||||||||||||||||||||| |||| ||| ||||||||| | ||||||| ||||| |||||||||||||||| |
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| T |
9996139 |
ttttgtattttaagagcaaaacgaatttgattagttc-aaaatgagaaagatacaaatggtaataaacctaaaggttgggt |
9996218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10007098 - 10007177
Alignment:
| Q |
1 |
ttttgcattttaagagcaaaacgaatttaattaattcaaaaatgagagaagtacaaatagtaattaacctaaaggttgggt |
81 |
Q |
| |
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||||| ||||||| |||||||||||||| |||| ||| ||||||||| | ||||||| ||||| |||||||||||||||| |
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| T |
10007098 |
ttttgtattttaacagcaaaacgaatttgattagttc-aaaatgagaaagatacaaatggtaataaacctaaaggttgggt |
10007177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7111930 - 7111852
Alignment:
| Q |
1 |
ttttgcattttaagagcaaaacgaatttaattaattcaaaaatgagagaagtacaaatagtaattaacctaaaggttgg |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7111930 |
ttttgcattttaagagcaaaacgaatttaattaattcaaaaatgagagaagtacaaatagtaataaacctaaaggttgg |
7111852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 18661494 - 18661650
Alignment:
| Q |
88 |
ttcataagttcattgcatgtaagctaaaagcaaaaatacaaattgaatacgtttcaaacac----aacatattctaaaagaagttgcacataataggtat |
183 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||| || ||||| ||||| |||| || | |||||||||||| ||| | |||||| |||| |||| |
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| T |
18661494 |
ttcataacttcattgcatgtaagctagaagaaaaattaaaaattaaatacatttctgacgcaacaaacatattctaagagaggatgcacaaaatatgtat |
18661593 |
T |
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| Q |
184 |
ttaacataaaatcgactaaatacataacattttcatataacttcgttgaatgtaagt |
240 |
Q |
| |
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||| ||||| || |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
18661594 |
ttaggccaaaatggagtaaatacataacatcttcatataacttcaatgaatgtaagt |
18661650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 18667337 - 18667373
Alignment:
| Q |
204 |
tacataacattttcatataacttcgttgaatgtaagt |
240 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |
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| T |
18667337 |
tacataacatcttcatataacttcattgaatgtaagt |
18667373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 5685751 - 5685890
Alignment:
| Q |
100 |
ttgcatgtaagctaaaagcaaaaatacaaattgaatacgtttcaaacacaacatattctaaaagaagttgcacataataggtatttaacataaaatcgac |
199 |
Q |
| |
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|||||||||| ||||||||||| ||||||| ||||| |||||| | ||||||||| | | |||||||||||| ||||| |||| | ||||| ||| |
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| T |
5685751 |
ttgcatgtaatctaaaagcaaagatacaaa-tgaat--gtttcaggcgcaacatattgtgagagaagttgcacagaatagctattcatttcaaaatggac |
5685847 |
T |
|
| Q |
200 |
taaatacataacatttt-catataacttcgttgaatgtaagtt |
241 |
Q |
| |
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||||||||||||||||| | | |||||| ||||||||||||| |
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| T |
5685848 |
taaatacataacattttaaacagaacttctttgaatgtaagtt |
5685890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 5680420 - 5680548
Alignment:
| Q |
85 |
aacttcataagttcattgcatgtaagctaaaagcaaaaa--tacaaattgaatacgtttcaaacacaacatattctaaaagaagttgcacataataggta |
182 |
Q |
| |
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|||||| ||| ||| |||||||| ||||||||| ||||| |||||||| |||||||| || ||| |||||| |||| ||| |||||| | |||||||| |
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| T |
5680420 |
aacttcgtaacttcgttgcatgtcagctaaaagaaaaaaattacaaattaaatacgttgcagaca-aacatagtctaggagaggttgcataaaataggta |
5680518 |
T |
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| Q |
183 |
tttaacataaaatcgactaaatacataaca |
212 |
Q |
| |
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||||| | |||| | ||||| |||||||| |
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|
| T |
5680519 |
tttaaaacaaaacgggctaaacacataaca |
5680548 |
T |
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