View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9275_low_5 (Length: 230)

Name: NF9275_low_5
Description: NF9275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9275_low_5
NF9275_low_5
[»] chr6 (5 HSPs)
chr6 (1-162)||(15634305-15634468)
chr6 (162-220)||(15634110-15634168)
chr6 (29-131)||(16279275-16279378)
chr6 (29-131)||(28365513-28365616)
chr6 (31-96)||(26597794-26597859)
[»] scaffold1750 (1 HSPs)
scaffold1750 (29-131)||(479-581)
[»] scaffold1345 (1 HSPs)
scaffold1345 (29-131)||(1637-1739)
[»] scaffold0131 (1 HSPs)
scaffold0131 (19-96)||(17438-17515)
[»] chr4 (1 HSPs)
chr4 (19-96)||(13241600-13241677)
[»] chr3 (2 HSPs)
chr3 (29-131)||(42400558-42400661)
chr3 (19-96)||(10976652-10976729)
[»] chr2 (2 HSPs)
chr2 (29-131)||(39839283-39839386)
chr2 (29-131)||(19040485-19040588)
[»] chr1 (3 HSPs)
chr1 (29-131)||(1992210-1992313)
chr1 (29-131)||(30001937-30002040)
chr1 (29-131)||(40946307-40946410)
[»] scaffold0021 (1 HSPs)
scaffold0021 (34-95)||(129255-129316)
[»] scaffold2098 (1 HSPs)
scaffold2098 (32-96)||(98-162)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 15634305 - 15634468
Alignment:
Q  1 ccgttggactttctgggagagcctacattgatgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatctaaa 100  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  15634305 ccgttggtctttctggaagagcctacattaatgtagatcgacaatttggagaaagaaaaatcacacaagtgagaatgacaccaccacatcttcatctaaa 15634404  T
Q  101 tttttcaagatttaagtatatgatttttgttgaccga---tacatgcatcacaatattttctctt 162  Q
    |||||||||| ||||||||||||||||||||||| ||   || ||||||||||||||||||||||    
T  15634405 tttttcaaga-ttaagtatatgatttttgttgactgacactagatgcatcacaatattttctctt 15634468  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 15634168 - 15634110
Alignment:
Q  162 tacaagtgggacgactcatacacaaagtgccataagactatgaaggaatatgtgatgtc 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15634168 tacaagtgagacgactcatacacaaagtgccataagactatgaaggaatatgtgatgtc 15634110  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 16279275 - 16279378
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| | |||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  16279275 tgatgtagatcgacaatttggggaaagagaaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 16279373  T
Q  127 ttgtt 131  Q
    |||||    
T  16279374 ttgtt 16279378  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 28365616 - 28365513
Alignment:
Q  29 tgatgtagatcgacaatttggagaaacaa-aaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaagatttaagtatatgatttt 127  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| ||  || ||||||||||||||    
T  28365616 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaattttaaaacttaaagtatatgatttt 28365517  T
Q  128 tgtt 131  Q
    ||||    
T  28365516 tgtt 28365513  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 26597794 - 26597859
Alignment:
Q  31 atgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatc 96  Q
    |||| |||||||||||||||||||  | |||||| ||||||| ||||| |||||| ||||||||||    
T  26597794 atgttgatcgacaatttggagaaaggacaatcacgcaagtgaaaatgataccaccacatcttcatc 26597859  T

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Target: scaffold1750 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 479 - 581
Alignment:
Q  29 tgatgtagatcgacaatttggagaaacaa-aaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaagatttaagtatatgatttt 127  Q
    |||||| ||||||||||||| ||||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| ||||||||||||||||    
T  479 tgatgttgatcgacaatttgaagaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaagtatatgatttt 577  T
Q  128 tgtt 131  Q
    ||||    
T  578 tgtt 581  T

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Target: scaffold1345 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 1739 - 1637
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaagatttaagtatatgatttt 127  Q
    ||||||||||| |||||||||||||| | |||| ||||||||||| ||| | |||||| || ||||||| ||| | || |||| ||||||||| ||||||    
T  1739 tgatgtagatcaacaatttggagaaagagaaaaccacacaagtgataataataccaccacaacttcatccaaaatctt-aagacttaagtatacgatttt 1641  T
Q  128 tgtt 131  Q
    ||||    
T  1640 tgtt 1637  T

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Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 17515 - 17438
Alignment:
Q  19 gagcctacattgatgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatc 96  Q
    |||||||||||| |||||||| |||||||||||||| |  || ||  ||||||| ||||| |||||| ||||||||||    
T  17515 gagcctacattggtgtagatcaacaatttggagaaagagcaaccatgcaagtgaaaatgataccaccacatcttcatc 17438  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 13241600 - 13241677
Alignment:
Q  19 gagcctacattgatgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatc 96  Q
    ||||||||| || |||||||| |||||||||||||| || || ||  ||||||| ||||| |||||| ||||||||||    
T  13241600 gagcctacactggtgtagatcaacaatttggagaaagaacaaccatgcaagtgaaaatgataccaccacatcttcatc 13241677  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 42400558 - 42400661
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  42400558 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 42400656  T
Q  127 ttgtt 131  Q
    |||||    
T  42400657 ttgtt 42400661  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 10976652 - 10976729
Alignment:
Q  19 gagcctacattgatgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatc 96  Q
    |||||||||  | ||||||| || |||||||||||| |  || ||| ||||||||||||| |||||| ||||||||||    
T  10976652 gagcctacaccggtgtagatagagaatttggagaaagagcaaccacgcaagtgagaatgataccaccacatcttcatc 10976729  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 39839283 - 39839386
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  39839283 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 39839381  T
Q  127 ttgtt 131  Q
    |||||    
T  39839382 ttgtt 39839386  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 19040588 - 19040485
Alignment:
Q  29 tgatgtagatcgacaatttggagaaacaa-aaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaagatttaa-gtatatgattt 126  Q
    ||||||| ||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| |||| |||||||||||    
T  19040588 tgatgtatatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 19040490  T
Q  127 ttgtt 131  Q
    |||||    
T  19040489 ttgtt 19040485  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 1992313 - 1992210
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  1992313 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 1992215  T
Q  127 ttgtt 131  Q
    |||||    
T  1992214 ttgtt 1992210  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 30001937 - 30002040
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  30001937 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 30002035  T
Q  127 ttgtt 131  Q
    |||||    
T  30002036 ttgtt 30002040  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 40946410 - 40946307
Alignment:
Q  29 tgatgtagatcgacaatttggagaaaca-aaaatcacacaagtgagaatgacaccaccccatcttcatctaaatttttcaaga-tttaagtatatgattt 126  Q
    ||||||||||||||||||||| |||| |  ||| ||||||||||| ||| | |||||| || ||||||| ||| |||| |||| || |||||||||||||    
T  40946410 tgatgtagatcgacaatttggggaaagaggaaaccacacaagtgataataataccaccacaacttcatccaaaatttt-aagacttaaagtatatgattt 40946312  T
Q  127 ttgtt 131  Q
    |||||    
T  40946311 ttgtt 40946307  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 129255 - 129316
Alignment:
Q  34 tagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcat 95  Q
    ||||| ||||||||||||||| |  || ||| ||||||||||||| |||||| |||||||||    
T  129255 tagatagacaatttggagaaagagcaaccacgcaagtgagaatgataccaccacatcttcat 129316  T

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Target: scaffold2098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 162 - 98
Alignment:
Q  32 tgtagatcgacaatttggagaaacaaaaatcacacaagtgagaatgacaccaccccatcttcatc 96  Q
    ||||||| ||||||||||||||| |  || ||  ||||||||||||| |||||| ||||||||||    
T  162 tgtagatagacaatttggagaaagagtaaccatgcaagtgagaatgataccaccacatcttcatc 98  T

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