View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9276_low_1 (Length: 547)
Name: NF9276_low_1
Description: NF9276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9276_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 9966103 - 9965877
Alignment:
| Q |
124 |
gcaaccaacctgcatgttaactttcaaaacatcaagaggagtggtagcaagatgagtggtaccagcactgagcattcctccaatggtgcaaagggcataa |
223 |
Q |
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| T |
9966103 |
gcaaccaacctgcatgttaactttcaaaacatcaagaggagtggtagcaagatgagtggtaccagcactgagcattcctccaatggtgcaaagggcataa |
9966004 |
T |
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| Q |
224 |
taccttggcgttaattcctgtgagattcctccttccatggccgccatgatccttttcttcagtgtaaaaatcacgttactgttagctccatttattcctt |
323 |
Q |
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| T |
9966003 |
taccttggcgttaattcctgtgagattcctccttccatggccgccatgatccttttcttcagtgtaaaaatcacgttactgttagctccatttattcctt |
9965904 |
T |
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| Q |
324 |
cactgaactctttcacgtgttttgatt |
350 |
Q |
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| T |
9965903 |
cactgaactctttcacgtgttttgatt |
9965877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 410 - 531
Target Start/End: Complemental strand, 9965817 - 9965696
Alignment:
| Q |
410 |
ttagaggttgttagagtgacacaaaacatataacaacacaacacaaatgtagtttgaaatgaatctgattctacctgcttgatgttaattgccccaaaag |
509 |
Q |
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| T |
9965817 |
ttagaggttgttagagtgacacaaaacatataacaacacaacacaaatgtagtttgaaatgaatctgattctacctgcttgatgttaattgcctcaaaag |
9965718 |
T |
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| Q |
510 |
tcaaaaaatgcccccattttgt |
531 |
Q |
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| T |
9965717 |
tcaaaaaatgcccccattttgt |
9965696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9966227 - 9966140
Alignment:
| Q |
1 |
caaaagggtatctaaaaaatccaatttttcccctaccccatttctaaaacctaatcaaacaaactaaaaaccacttcattatcgtgaa |
88 |
Q |
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| T |
9966227 |
caaaagggtatctaaaaaatccaatttttccactaccccatttctaaaacctaatcaaacaaactaaaaaccacttcattatcgtgaa |
9966140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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