View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9277_low_2 (Length: 408)
Name: NF9277_low_2
Description: NF9277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9277_low_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 42800183 - 42800566
Alignment:
| Q |
16 |
cacattacagaaggatgtattggagaaacatgattgtttcagctttagtttcacaaatggtataaggaaataaatatatagtttcaaatgcaatagcaga |
115 |
Q |
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| T |
42800183 |
cacattacaaaaggatgtattggagaaacatgattgtttcagctttagttttacaaatggtataaggaaataaatatatagtttcaaatgcaatagcaga |
42800282 |
T |
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| Q |
116 |
agaatagtgacctcataagcaagaacctgattaagcatagtggtttagatattataactttggaattagaaagtaatgaaattaaaacagagaaatgttg |
215 |
Q |
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| T |
42800283 |
agaataatgacctcataagcaagaacctgattaagcatagtggtttagatattataactatggaattagaaagtaatgaaattaaaacagagaaatgttg |
42800382 |
T |
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| Q |
216 |
ctcattatataataatgttatctaaatatataaatttctnnnnnnnnnncatgacaggccactcaatatataatagaataagatcattctcataaacatt |
315 |
Q |
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| T |
42800383 |
ctcattatataataatgttatctaaatatataaatttctaaaaaaaaaacatgacaggccactcaatatataatagaataagatcattctcataaacatt |
42800482 |
T |
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| Q |
316 |
taaaacaaagaagaaatttttagatgataataatgatatttgaaactgaaaagccacttcgggtacactctagaatcttaataaccatagtca |
408 |
Q |
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| T |
42800483 |
taaaacaaagaagaaatttttag---------atgatatttgaaactgagaagccacttcgaatacactctagaatcttaataaccatagtca |
42800566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 42803457 - 42803543
Alignment:
| Q |
322 |
aaagaagaaatttttagatgataataatgatatttgaaactgaaaagccacttcgggtacactctagaatcttaataaccatagtca |
408 |
Q |
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| T |
42803457 |
aaagaaggaaattttagatgataatgatgatatttcaaactgagaagccacttcgggtacactctaaaatcttaataaccatggtca |
42803543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 42803312 - 42803386
Alignment:
| Q |
16 |
cacattacagaaggatgtattggagaaacatgattgtttcagctttagtttcacaaatggtataaggaaataaata |
91 |
Q |
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| T |
42803312 |
cacattacagaaa-atgtattggagaaacatgattgttgcaaccttagtttcacaaatggtataagaaaataaata |
42803386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 42803406 - 42803453
Alignment:
| Q |
182 |
tagaaagtaatgaaattaaaacagagaaatgttgctcattatataata |
229 |
Q |
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| T |
42803406 |
tagaaagtagtgaaattaaaacagagaaatgttgttcactagataata |
42803453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 27907045 - 27907174
Alignment:
| Q |
16 |
cacattacagaaggatgtattggagaaacatgattgtttcagctttagtttcacaaatggtataaggaaataaatatatagtttcaaatgcaatagcaga |
115 |
Q |
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| T |
27907045 |
cacattacagaaa-atgcattggagaaacatgattgtttcaactttagtttcactaatgctataaggaaataaata----gtttcaaatgcagtagcaga |
27907139 |
T |
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| Q |
116 |
agaatagtgacctcataagcaagaacctgattaag |
150 |
Q |
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| T |
27907140 |
agaatagtgacctcataagcaagaacttgattaag |
27907174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 27907189 - 27907247
Alignment:
| Q |
185 |
aaagtaatgaaattaaaacagagaaatgttgctcattatataataatgttatctaaata |
243 |
Q |
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| T |
27907189 |
aaagtaatgaaattaaaacagagaaatgttgctcattagatgataaagttatccaaata |
27907247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 27907329 - 27907357
Alignment:
| Q |
307 |
ataaacatttaaaacaaagaagaaatttt |
335 |
Q |
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| T |
27907329 |
ataaacatttaaaacaaagaagaaatttt |
27907357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 7387428 - 7387377
Alignment:
| Q |
158 |
gtttagatattataactttggaattagaaagtaatgaaattaaaacagagaa |
209 |
Q |
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| T |
7387428 |
gtttagatattgcaactttggaattagaaagtaatgaaattaaatcagagaa |
7387377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 7387479 - 7387428
Alignment:
| Q |
87 |
aaatatatagtttcaaatgcaatagcagaagaatagtgacctcataagcaag |
138 |
Q |
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| T |
7387479 |
aaataaatagtttgaaatgcagtagcagaagaatagtgagctcataaacaag |
7387428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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