View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9277_low_3 (Length: 267)

Name: NF9277_low_3
Description: NF9277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9277_low_3
NF9277_low_3
[»] chr5 (13 HSPs)
chr5 (17-176)||(39933706-39933863)
chr5 (177-223)||(43358409-43358455)
chr5 (178-223)||(3631259-3631304)
chr5 (178-223)||(9737819-9737864)
chr5 (178-223)||(13013367-13013412)
chr5 (178-223)||(19577292-19577337)
chr5 (178-223)||(26525342-26525387)
chr5 (178-223)||(26784912-26784957)
chr5 (178-220)||(8074355-8074397)
chr5 (177-223)||(28662116-28662162)
chr5 (178-223)||(25701533-25701578)
chr5 (181-221)||(9596280-9596320)
chr5 (179-223)||(43348635-43348679)
[»] chr4 (13 HSPs)
chr4 (178-223)||(13233230-13233275)
chr4 (178-223)||(6755829-6755874)
chr4 (178-223)||(36584424-36584469)
chr4 (178-223)||(40228544-40228589)
chr4 (178-223)||(44817662-44817707)
chr4 (178-223)||(51001476-51001521)
chr4 (178-218)||(22647111-22647151)
chr4 (179-222)||(2655024-2655067)
chr4 (178-223)||(11651079-11651124)
chr4 (178-219)||(18491187-18491228)
chr4 (178-219)||(19653761-19653802)
chr4 (178-223)||(31664276-31664321)
chr4 (178-223)||(44134494-44134539)
[»] chr2 (9 HSPs)
chr2 (178-223)||(38763714-38763759)
chr2 (178-223)||(6750119-6750164)
chr2 (178-223)||(13616076-13616121)
chr2 (178-223)||(38527174-38527219)
chr2 (179-223)||(34983277-34983321)
chr2 (178-221)||(28745609-28745652)
chr2 (178-221)||(36436297-36436340)
chr2 (178-223)||(22674853-22674898)
chr2 (178-222)||(2249581-2249625)
[»] chr1 (9 HSPs)
chr1 (178-223)||(37125693-37125738)
chr1 (178-223)||(6849753-6849798)
chr1 (178-223)||(16693061-16693106)
chr1 (178-223)||(17285406-17285451)
chr1 (178-222)||(8530083-8530127)
chr1 (180-223)||(33012169-33012212)
chr1 (178-223)||(29981819-29981864)
chr1 (178-223)||(47561727-47561772)
chr1 (179-223)||(44052571-44052615)
[»] scaffold0014 (1 HSPs)
scaffold0014 (178-223)||(64934-64979)
[»] chr7 (5 HSPs)
chr7 (178-223)||(26873703-26873748)
chr7 (178-223)||(44724176-44724221)
chr7 (180-220)||(44468137-44468177)
chr7 (181-221)||(17166869-17166909)
chr7 (178-218)||(36675605-36675645)
[»] chr3 (9 HSPs)
chr3 (178-223)||(18163718-18163763)
chr3 (178-223)||(29126157-29126202)
chr3 (178-223)||(52571538-52571583)
chr3 (183-223)||(1092991-1093031)
chr3 (178-222)||(50527748-50527792)
chr3 (178-223)||(7160404-7160449)
chr3 (178-223)||(16908922-16908967)
chr3 (178-223)||(52201982-52202027)
chr3 (178-218)||(2618885-2618925)
[»] chr8 (7 HSPs)
chr8 (178-222)||(9830608-9830652)
chr8 (178-222)||(34934370-34934414)
chr8 (178-223)||(1098058-1098103)
chr8 (177-218)||(1183822-1183863)
chr8 (177-222)||(6316876-6316921)
chr8 (178-223)||(24797167-24797212)
chr8 (178-223)||(41838068-41838113)
[»] scaffold0131 (1 HSPs)
scaffold0131 (178-221)||(11167-11210)
[»] scaffold0050 (1 HSPs)
scaffold0050 (180-223)||(19048-19091)
[»] chr6 (2 HSPs)
chr6 (178-223)||(12698494-12698539)
chr6 (178-223)||(16461522-16461567)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 39933706 - 39933863
Alignment:
Q  17 agaggatataatacttagaattttgaggaccgagtgtctgcctcctaaagaagtaagagaagaactatagagtttgttaattcattgataaaatctcata 116  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39933706 agaggataaaatacttagaattttgaggaccgagtgt--gcctcctaaagaagtaagagaagaacaatagagtttgttaattcattgataaaatctcata 39933803  T
Q  117 aatgaagcgcaatgcttgaaaagaaaaagaagatcttctaggtgacataactgcctaaca 176  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39933804 aatgaagtgcaatgcttgaaaagaaaaagaagatcttctaggtgacataactgcctaaca 39933863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 43358409 - 43358455
Alignment:
Q  177 tagtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  43358409 tagtggcggagcccttcatgggctgaggtgggccacggcccacccgg 43358455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 3631259 - 3631304
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  3631259 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 3631304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 9737864 - 9737819
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  9737864 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 9737819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 13013412 - 13013367
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  13013412 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 13013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 19577337 - 19577292
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||||    
T  19577337 agtggcggagcccttcatgggctaaggtgggccacggcccacccgg 19577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 26525387 - 26525342
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  26525387 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 26525342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 26784912 - 26784957
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||||    
T  26784912 agtggcggagcccttcatgggcttaggtgggccacggcccacccgg 26784957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 8074397 - 8074355
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacc 220  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||    
T  8074397 agtggcggagcccttcatgggctggggtgggccacggcccacc 8074355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 28662116 - 28662162
Alignment:
Q  177 tagtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||||||||| |||| || ||||| |||||||||||||||||||||    
T  28662116 tagtggcggagccctttatgggctggggtgggccacggcccacccgg 28662162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 25701578 - 25701533
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  25701578 agtggcggagcccttcatgggctggggtgggccacggcccatccgg 25701533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 9596320 - 9596280
Alignment:
Q  181 ggcggagtccttcataggctgaggtgggccacggcccaccc 221  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  9596320 ggcggagcccttcaaaggctggggtgggccacggcccaccc 9596280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 43348635 - 43348679
Alignment:
Q  179 gtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||||||| ||||||| ||||| || ||||||||||||||||||    
T  43348635 gtggcggagcccttcatgggctggggcgggccacggcccacccgg 43348679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 13233230 - 13233275
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  13233230 agtggcggagtccttcataggctggggtgggccacggcccacccgg 13233275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 6755829 - 6755874
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  6755829 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 6755874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 36584424 - 36584469
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  36584424 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 36584469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 40228589 - 40228544
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  40228589 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 40228544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 44817707 - 44817662
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  44817707 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 44817662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 51001476 - 51001521
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  51001476 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 51001521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 22647111 - 22647151
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggccca 218  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  22647111 agtggcggagcccttcatgggctgaggtgggccacggccca 22647151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 2655067 - 2655024
Alignment:
Q  179 gtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||    
T  2655067 gtggcggagcccttcatgggctggggtgggccacggcccacccg 2655024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 11651124 - 11651079
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| ||||||||||||||| |||||    
T  11651124 agtggcggagcccttcatgggctggggtgggccacggcccgcccgg 11651079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 18491187 - 18491228
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccac 219  Q
    |||||||||| ||||||| ||||| |||||||||||||||||    
T  18491187 agtggcggagcccttcatgggctggggtgggccacggcccac 18491228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 19653802 - 19653761
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccac 219  Q
    |||||||||| ||||||| ||||| |||||||||||||||||    
T  19653802 agtggcggagcccttcatgggctggggtgggccacggcccac 19653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 31664321 - 31664276
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| || || |||||||||||||||||||||    
T  31664321 agtggcggagcccttcatgggatggggtgggccacggcccacccgg 31664276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 44134494 - 44134539
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||| ||||||||    
T  44134494 agtggcggagcccttcatgggctggggtgggccacggtccacccgg 44134539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 38763714 - 38763759
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  38763714 agtggcggagcccttcatgggctgaggtgggccacggcccacccgg 38763759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 6750164 - 6750119
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  6750164 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 6750119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 13616121 - 13616076
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||    
T  13616121 agtggcggagtctttcatgggctggggtgggccacggcccacccgg 13616076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 38527174 - 38527219
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  38527174 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 38527219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 34983277 - 34983321
Alignment:
Q  179 gtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  34983277 gtggcggagcccttcatgggctggggtgggccacggcccacccgg 34983321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 28745652 - 28745609
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccaccc 221  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  28745652 agtggcggagcccttcatgggctggggtgggccacggcccaccc 28745609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 36436340 - 36436297
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccaccc 221  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  36436340 agtggcggagcccttcatgggctggggtgggccacggcccaccc 36436297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 22674898 - 22674853
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| ||||| |||||||||||||||    
T  22674898 agtggcggagcccttcatgggctggggtggaccacggcccacccgg 22674853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2249581 - 2249625
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||||    
T  2249581 agtggcggagcccttcatgggctggggtgggccacgacccacccg 2249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 37125693 - 37125738
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  37125693 agtggcggagcccttcatgggctgaggtgggccacggcccacccgg 37125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 6849753 - 6849798
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  6849753 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 6849798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 16693106 - 16693061
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  16693106 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 16693061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 17285451 - 17285406
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  17285451 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 17285406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 8530083 - 8530127
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  8530083 agtggcggagcccttcatgggctggggtgggccacggcccacccg 8530127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 33012212 - 33012169
Alignment:
Q  180 tggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  33012212 tggcggagcccttcatgggctggggtgggccacggcccacccgg 33012169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 29981864 - 29981819
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  29981864 agtggcggagcccttcatgggctggggtgggccacggcccatccgg 29981819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 47561727 - 47561772
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| |||||||||| |  |||||||||||||||||||||    
T  47561727 agtggcggagcccttcataggtttgggtgggccacggcccacccgg 47561772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 44052615 - 44052571
Alignment:
Q  179 gtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  44052615 gtggcggagcccttcatgggctggggtgggccacggctcacccgg 44052571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 64934 - 64979
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  64934 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 64979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 26873703 - 26873748
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  26873703 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 26873748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 44724221 - 44724176
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  44724221 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 44724176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 44468177 - 44468137
Alignment:
Q  180 tggcggagtccttcataggctgaggtgggccacggcccacc 220  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  44468177 tggcggagcccttcataggctggggtgggccacggcccacc 44468137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 17166869 - 17166909
Alignment:
Q  181 ggcggagtccttcataggctgaggtgggccacggcccaccc 221  Q
    ||||||| ||||||| ||||| |||||||||||||||||||    
T  17166869 ggcggagcccttcatgggctggggtgggccacggcccaccc 17166909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 36675645 - 36675605
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggccca 218  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  36675645 agtggcggagcccttcatgggctggggtgggccacggccca 36675605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 18163718 - 18163763
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  18163718 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 18163763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 29126202 - 29126157
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  29126202 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 29126157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 52571583 - 52571538
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||    
T  52571583 agtggcggagcccttcatgggctggggtgggccacggcccacccgg 52571538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 1093031 - 1092991
Alignment:
Q  183 cggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  1093031 cggagcccttcatgggctgaggtgggccacggcccacccgg 1092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 50527792 - 50527748
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  50527792 agtggcggagcccttcatgggctggggtgggccacggcccacccg 50527748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 7160449 - 7160404
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| | ||||| ||||| |||||||||||||||||||||    
T  7160449 agtggcggagcctttcatgggctggggtgggccacggcccacccgg 7160404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 16908967 - 16908922
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||| ||| ||||||| ||||| |||||||||||||||||||||    
T  16908967 agtggcagagcccttcatgggctggggtgggccacggcccacccgg 16908922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 52201982 - 52202027
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  52201982 agtggcggagcccttcatgggctggggtgggtcacggcccacccgg 52202027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 2618885 - 2618925
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggccca 218  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  2618885 agtggcggagcccttcatgggttgaggtgggccacggccca 2618925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 9830608 - 9830652
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  9830608 agtggcggagcccttcatgggctggggtgggccacggcccacccg 9830652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 34934414 - 34934370
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||    
T  34934414 agtggcggagcccttcatgggctggggtgggccacggcccacccg 34934370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 1098058 - 1098103
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| |  ||||||||||||||||||||||||    
T  1098058 agtggcggagcccttcatggcgtgaggtgggccacggcccacccgg 1098103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 1183822 - 1183863
Alignment:
Q  177 tagtggcggagtccttcataggctgaggtgggccacggccca 218  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||    
T  1183822 tagtggcggagcccttcatgggctggggtgggccacggccca 1183863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 6316876 - 6316921
Alignment:
Q  177 tagtggcggagtccttcataggctgaggtgggccacggcccacccg 222  Q
    ||||||||||| | ||||| ||||| ||||||||||||||||||||    
T  6316876 tagtggcggagcctttcatgggctggggtgggccacggcccacccg 6316921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 24797212 - 24797167
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  24797212 agtggcggagcccttcatgggctggggtgggccacggcccatccgg 24797167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 41838113 - 41838068
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| ||||||||||||||| |||||    
T  41838113 agtggcggagcccttcatgggctggggtgggccacggcccgcccgg 41838068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 11167 - 11210
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccaccc 221  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  11167 agtggcggagcccttcatgggctggggtgggccacggcccaccc 11210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 19048 - 19091
Alignment:
Q  180 tggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  19048 tggcggagcccttcatgggctggggtgggccacggcccacccgg 19091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 12698494 - 12698539
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||| ||||||| ||||| |||||||||||||| ||||||    
T  12698494 agtggcggagcccttcatgggctggggtgggccacggccgacccgg 12698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 16461567 - 16461522
Alignment:
Q  178 agtggcggagtccttcataggctgaggtgggccacggcccacccgg 223  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||||    
T  16461567 agtggcggagtccttcatggactggggtgggtcacggcccacccgg 16461522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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