View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9278_low_1 (Length: 1332)

Name: NF9278_low_1
Description: NF9278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9278_low_1
NF9278_low_1
[»] chr1 (11 HSPs)
chr1 (624-1302)||(17560737-17561416)
chr1 (1-283)||(17559972-17560269)
chr1 (640-884)||(4366475-4366719)
chr1 (661-869)||(21855384-21855592)
chr1 (648-870)||(39379049-39379271)
chr1 (650-778)||(4570879-4571007)
chr1 (661-789)||(10218926-10219054)
chr1 (981-1048)||(39379409-39379476)
chr1 (639-725)||(4014944-4015030)
chr1 (972-1095)||(4366825-4366948)
chr1 (680-788)||(4016792-4016900)
[»] chr7 (28 HSPs)
chr7 (639-875)||(29874365-29874602)
chr7 (648-881)||(29859303-29859536)
chr7 (639-885)||(29881101-29881347)
chr7 (646-884)||(29454089-29454327)
chr7 (975-1136)||(29859021-29859182)
chr7 (639-884)||(29921972-29922211)
chr7 (639-885)||(29867084-29867327)
chr7 (639-875)||(29430980-29431213)
chr7 (980-1052)||(29431339-29431411)
chr7 (981-1095)||(29898985-29899099)
chr7 (680-778)||(29445676-29445774)
chr7 (669-884)||(29895312-29895530)
chr7 (684-884)||(29920067-29920267)
chr7 (984-1049)||(29476676-29476741)
chr7 (680-878)||(29899220-29899424)
chr7 (646-730)||(14076678-14076762)
chr7 (646-730)||(14386706-14386790)
chr7 (972-1052)||(29454436-29454516)
chr7 (646-725)||(660833-660912)
chr7 (997-1063)||(24391057-24391123)
chr7 (980-1034)||(29106486-29106540)
chr7 (981-1042)||(29445989-29446050)
chr7 (638-706)||(19351047-19351115)
chr7 (983-1039)||(19351386-19351442)
chr7 (975-1039)||(26237281-26237345)
chr7 (680-731)||(29106813-29106864)
chr7 (1204-1246)||(29106277-29106319)
chr7 (997-1046)||(19637584-19637633)
[»] chr3 (1 HSPs)
chr3 (639-885)||(3625579-3625825)
[»] chr4 (11 HSPs)
chr4 (649-870)||(3557586-3557807)
chr4 (639-884)||(3560937-3561182)
chr4 (649-788)||(3565686-3565825)
chr4 (648-885)||(1686273-1686510)
chr4 (660-730)||(53774840-53774910)
chr4 (981-1046)||(3565401-3565466)
chr4 (646-730)||(11970968-11971052)
chr4 (982-1045)||(1686634-1686697)
chr4 (661-722)||(53430100-53430161)
chr4 (1204-1241)||(3561517-3561554)
chr4 (641-730)||(11981664-11981753)
[»] chr5 (2 HSPs)
chr5 (661-869)||(24330900-24331108)
chr5 (662-791)||(29597554-29597683)
[»] chr2 (2 HSPs)
chr2 (639-706)||(14514924-14514991)
chr2 (838-883)||(14514730-14514775)
[»] chr6 (2 HSPs)
chr6 (659-730)||(6921349-6921420)
chr6 (648-725)||(6935206-6935283)
[»] scaffold0242 (2 HSPs)
scaffold0242 (828-884)||(13898-13954)
scaffold0242 (828-884)||(22733-22789)


Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 624 - 1302
Target Start/End: Original strand, 17560737 - 17561416
Alignment:
Q  624 ataaccatcatagatataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatata 723  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17560737 ataaccatcatagctataatcaatttgaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatata 17560836  T
Q  724 accaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggca 823  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  17560837 accaaatcgatttccttgtaacaataagaaaaacaaagacagtcccccaacacaccaaaagttggttctatggttggcacctcgtcaaaatcacgaggca 17560936  T
Q  824 ataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaacaccaatatcttccagattttcaaaatcataatgtaatac 923  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17560937 ataagtactaattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaacaccaatatcttccagattttcaaaatcataatgtaatac 17561036  T
Q  924 attttgaatagccaatcagttaagagtgcttttgaaatacacattcatgtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgtta 1023  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17561037 attttgaatagccaaccagttaagagtgcttttgaaatacacattcatgtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgtta 17561136  T
Q  1024 tcacccaaactt-aaaattctcacattgctactcctttgacgtggattgtaacgtgaagccactaccttataaatgccggtggaagtatcacaaccaaag 1122  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17561137 tcacccaaacttaaaaattctcacattgctactcctttgacatggattgtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaag 17561236  T
Q  1123 ttgaattggtaataggcatgaaacctggaacagccgaataaatctttttgaaaataaccaaattttggagttatttcttttgtggctgggttcaataaac 1222  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17561237 ttgaattggtaataggcatgaaacctagaatagccgaataaatcttcttgaaaataaccaaattttggagttatttcttttgtggctgggttccataaac 17561336  T
Q  1223 ggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaagaaccaattata 1302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17561337 ggagccagtactcttgataatcgtaaaaagaataacttccaccttccaaacatatcaatccattgcaaggaccaattata 17561416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 17559972 - 17560269
Alignment:
Q  1 ctaacctggcttttcaattagttggaattgaacttgttgtagatagtctctccacagtttggcttgatgcttagaggataaagattaaaga--------- 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  17559972 ctaacctggcttttcaattagttggaattgaacttgttgtagatagtctctccacagtttggcttgatgcttagaggataaagattaaagaactatatat 17560071  T
Q  92 --gctacaagattcacatgattttgaatttgatgttgcacaagaatataaatcaactactttctacatacacaatttgtcattctctaagcatcaagttt 189  Q
      |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17560072 gtgctacaagattcacatgattttgaatttgatgttgcacaataatataaatcaactactttctacatacacaatttgtcattctctaagcatcaagttt 17560171  T
Q  190 aattgtaattaaaaatcatatct---acaagttcaaatgcttgcaactacttca-agggcagattaattttacaatactcgatggaaaatcatattaa 283  Q
    |||||| ||||| ||||||||||   |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  17560172 aattgtcattaacaatcatatctacaacaagttcaaatgcttgcaactacttgacagggcagattaattttacaatactcgatggaaaatcatattaa 17560269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 640 - 884
Target Start/End: Original strand, 4366475 - 4366719
Alignment:
Q  640 taatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcct 739  Q
    ||||| ||||||||||  |  ||||||| | |||| |||||||||||||| ||||||||||| ||||||||||  ||||||| ||| |||||  ||| ||    
T  4366475 taatctatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttct 4366574  T
Q  740 tgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgta 839  Q
    |||||  ||||||||||||||| |||||||||||||||||||  ||||||||  | | |||||| || |||||| || ||||||  ||||| ||||||||    
T  4366575 tgtaagaataagaaaaacaaaggcagtcccccaacacaccaactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgta 4366674  T
Q  840 tgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    |||||| || | || |||||||||||||||| ||||||| |||||    
T  4366675 tgtctctgtacccagatcaagcgaaacaataacaaattgctcaac 4366719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 661 - 869
Target Start/End: Original strand, 21855384 - 21855592
Alignment:
Q  661 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 760  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 21855483  T
Q  761 gacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaag 860  Q
    ||||| ||| ||| |||||||||||||| ||| | |  || || || |||||| |||||||||  | ||| |||||||||||||| |||  |||||||||    
T  21855484 gacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaag 21855583  T
Q  861 cgaaacaat 869  Q
     ||||||||    
T  21855584 agaaacaat 21855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 648 - 870
Target Start/End: Original strand, 39379049 - 39379271
Alignment:
Q  648 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 747  Q
    ||||||||| | |||||| ||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||  |||   |||||| |    
T  39379049 ttgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaa 39379148  T
Q  748 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 847  Q
    |||||||||||||||||||| ||||||||||||| | |||| |||   |  || ||||| |||||| |   ||||||    ||||| |||||||| ||||    
T  39379149 taagaaaaacaaagacagtcacccaacacaccaaaacttggctctgcagacggaacctcatcaaaaccccaaggcaaccgatactggttgtatgtttcag 39379248  T
Q  848 tcctcaaatcaagcgaaacaata 870  Q
    ||| ||||||||| |||||||||    
T  39379249 tccccaaatcaagtgaaacaata 39379271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 650 - 778
Target Start/End: Complemental strand, 4571007 - 4570879
Alignment:
Q  650 gaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgata 749  Q
    |||||||  ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||  ||||| |||    |||    
T  4571007 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 4570908  T
Q  750 agaaaaacaaagacagtcccccaacacac 778  Q
    |||||||||||| ||| | ||||||||||    
T  4570907 agaaaaacaaaggcagcctcccaacacac 4570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 661 - 789
Target Start/End: Complemental strand, 10219054 - 10218926
Alignment:
Q  661 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 760  Q
    ||||||||| |||| ||| |||||||||||||||||| ||||||||||||||  ||||||| ||| |||||  |||||||||    | ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  761 gacagtcccccaacacaccaatagttggt 789  Q
    | ||  |||||||||||||||||||||||    
T  10218954 ggcaaccccccaacacaccaatagttggt 10218926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 981 - 1048
Target Start/End: Original strand, 39379409 - 39379476
Alignment:
Q  981 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacat 1048  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||| ||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcacccaaactgaaaactctcacat 39379476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 639 - 725
Target Start/End: Original strand, 4014944 - 4015030
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 725  Q
    |||||| ||| ||||||| |  ||||||| | |||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  4014944 ataatctattagaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataac 4015030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 972 - 1095
Target Start/End: Original strand, 4366825 - 4366948
Alignment:
Q  972 gtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattg 1071  Q
    |||||||  |||||||||||  || ||||||| |||||||||||||||||||||||||| ||||| ||| |||||| |||| |||  ||||  ||||| |    
T  4366825 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatgg 4366924  T
Q  1072 taacgtgaagccactaccttataa 1095  Q
    ||||| ||  |||| |||||||||    
T  4366925 taacgggacaccaccaccttataa 4366948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 680 - 788
Target Start/End: Original strand, 4016792 - 4016900
Alignment:
Q  680 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacacc 779  Q
    ||||||| ||||||||||| |||||||||||||  ||||| |||   |||| | ||| | | ||   ||||||||||||||| ||| ||||||||||||     
T  4016792 gagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctataggaataagaaaaacaaaggcagccccccaacacact 4016891  T
Q  780 aatagttgg 788  Q
    |||||||||    
T  4016892 aatagttgg 4016900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 6e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 639 - 875
Target Start/End: Complemental strand, 29874602 - 29874365
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||||||||||||||  | |||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||  |||||  |||||    
T  29874602 ataatcaatttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttcc 29874503  T
Q  739 ttgtaacgataagaaaaacaaagacagtc-ccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattg 837  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| |   | ||||||||| ||||||||| ||||||| |||||| |||||    
T  29874502 ttgtaacaataagaaaaacaaagacagtcgccccaacacacctatatttggttgtgcaggtggcacctcatcaaaatcacgaggcaagaagtaccgattg 29874403  T
Q  838 tatgtctcagtcctcaaatcaagcgaaacaataccaaa 875  Q
    ||||||||||| ||||||||||  ||||||||| ||||    
T  29874402 tatgtctcagttctcaaatcaaatgaaacaataacaaa 29874365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 648 - 881
Target Start/End: Complemental strand, 29859536 - 29859303
Alignment:
Q  648 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 747  Q
    |||||||| || |||||||||| |||| ||||| ||||||||||||||||| |||||||||||||  | ||||||||| |||||  |||||||||||| |    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaa 29859437  T
Q  748 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 847  Q
    |||||||||||||||  |||||||||||||||||||||||||   |  |  |||||||| |||||  || ||||||||||||| ||||||||||| |||     
T  29859436 taagaaaaacaaagatggtcccccaacacaccaatagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcac 29859337  T
Q  848 tcctcaaatcaagcgaaacaataccaaattgttc 881  Q
    ||| ||||||||| ||||||||| ||||||||||    
T  29859336 tccccaaatcaagtgaaacaataacaaattgttc 29859303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 639 - 885
Target Start/End: Complemental strand, 29881347 - 29881101
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    ||||||||||||||||   |  |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| | ||  |||||  |||||    
T  29881347 ataatcaatttgaagactatggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttcc 29881248  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||||||| |||| |||| ||||| |||||| |||||||||||| | |||||  |   | ||||||||| ||||||    |||||| |   || |||||||    
T  29881247 ttgtaacaataacaaaagcaaaggcagtcctccaacacaccaacaattggtcgtgcaggtggcacctcatcaaaactcggaggcagtcgatattgattgt 29881148  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 885  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||||    
T  29881147 atgtctcagtccccaaatcaagtgaaacaataacaaattggtcaaca 29881101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 646 - 884
Target Start/End: Original strand, 29454089 - 29454327
Alignment:
Q  646 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaac 745  Q
    ||||||||||| | |||||||||| ||| |||| ||||||||||||||||||| ||||||||| |||   |||||||||| ||||||  ||||||||||     
T  29454089 atttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaag 29454188  T
Q  746 gataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctc 845  Q
     ||||||||||||||| |   ||||||| |||||||  |||||  ||   | ||||||||| ||||||||| ||||||||  ||||| |||||| |||||    
T  29454189 aataagaaaaacaaaggcttccccccaaaacaccaaccgttggagcttcaggtggcacctcatcaaaatcacgaggcaattggtacttattgtacgtctc 29454288  T
Q  846 agtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    ||||| ||||||||| |||| |||| |||| || |||||    
T  29454289 agtccccaaatcaagtgaaataataacaaactgctcaac 29454327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 975 - 1136
Target Start/End: Complemental strand, 29859182 - 29859021
Alignment:
Q  975 caaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattgtaa 1074  Q
    ||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||  || |||| ||||||||    
T  29859182 caaaagaataggatcaaccgggaaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctcagttcacgttgattgtaa 29859083  T
Q  1075 cgtgaagccactaccttataaatgccggtggaagtatcacaaccaaagttgaattggtaata 1136  Q
    ||||  ||||| ||||||||| ||| ||| ||| ||||||| ||||||  ||||| ||||||    
T  29859082 cgtgcggccacgaccttataagtgctggtagaattatcacatccaaaggagaatttgtaata 29859021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 639 - 884
Target Start/End: Original strand, 29921972 - 29922211
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||| ||| ||||||  | ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||  ||||||||||| |||||  ||||     
T  29921972 ataatctattagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttct 29922071  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||||||  ||||||||||||||| ||| |||||||||||||||  |||||||||   | |||||| ||      |||| ||||||| |  || |||||||    
T  29922072 ttgtaagcataagaaaaacaaaggcagccccccaacacaccaacggttggttctgcagatggcacttc------atcaagaggcaacagatattgattgt 29922165  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    ||||||| ||||  |||||||| ||||| ||| |||| ||||||||    
T  29922166 atgtctccgtccctaaatcaagagaaacgataacaaaatgttcaac 29922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 639 - 885
Target Start/End: Complemental strand, 29867327 - 29867084
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||||||||||||||  |  |||||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||  |||||  |||||    
T  29867327 ataatcaatttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc 29867228  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||   |  ||||||||||||||| ||||||||||||||||||| | | || | |   |  |||||||| ||||||    |||||| |  ||| |||||||    
T  29867227 tt---agaataagaaaaacaaaggcagtcccccaacacaccaacaataggatatgcagacggcacctcatcaaaacttggaggcagtcggtattgattgt 29867131  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 885  Q
    || ||||||||| ||||||||| ||||||||| |||| || ||||||    
T  29867130 atttctcagtccccaaatcaagtgaaacaataacaaactggtcaaca 29867084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 639 - 875
Target Start/End: Original strand, 29430980 - 29431213
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||| ||||||||||| | |||||||||| |||||||| | ||||||||||||| | ||||||||||| |||   |||||||||| |||| | | |||    
T  29430980 ataatctatttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtcc 29431079  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||  ||   |||||||||||||| ||  ||||||| |||  ||   ||||  | ||   ||||||||| ||||||||| ||||||| ||||||| ||| |    
T  29431080 ttagaa---taagaaaaacaaaggcatccccccaaaacatgaaccattggagccataaatggcacctcatcaaaatcacgaggcaacaagtacttattat 29431176  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaa 875  Q
    |||||||||||| |||||||||||||| |||| ||||    
T  29431177 atgtctcagtccccaaatcaagcgaaagaataacaaa 29431213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 980 - 1052
Target Start/End: Original strand, 29431339 - 29431411
Alignment:
Q  980 caagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgct 1052  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||| | ||||||||    
T  29431339 caagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgct 29431411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 981 - 1095
Target Start/End: Complemental strand, 29899099 - 29898985
Alignment:
Q  981 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgacgtggattgtaacgtgaa 1080  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||| ||||| | |||| |||||||||| |||  | ||  ||||||||||||  |     
T  29899099 aagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggattgtaacggtat 29899000  T
Q  1081 gccactaccttataa 1095  Q
    ||||| |||||||||    
T  29898999 gccaccaccttataa 29898985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 680 - 778
Target Start/End: Original strand, 29445676 - 29445774
Alignment:
Q  680 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacac 778  Q
    |||||||||| ||||||||||| |||| |||||  ||||||||||  |||||| |||||||||||  ||||||| |||||||  || ||||||||||||    
T  29445676 gagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagccccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 669 - 884
Target Start/End: Complemental strand, 29895530 - 29895312
Alignment:
Q  669 tctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgt---aacgataagaaaaacaaagacag 765  Q
    |||||| ||| || ||||||| ||||| | ||||||||||||||  ||||||| ||| || ||| |||||||||   ||  |||||||||||||||||||    
T  29895530 tctaagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacag 29895431  T
Q  766 tcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaa 865  Q
     | ||||| |||| ||  ||||||| | | |  |||||||| |||||| |  ||||||  | ||| |||||||| ||||| || | ||  ||||||||||    
T  29895430 ccacccaagacactaaccgttggttgtgtagggggcacctcatcaaaacccagaggcagcaggtattgattgtaagtctccgttcccagctcaagcgaaa 29895331  T
Q  866 caataccaaattgttcaac 884  Q
    ||||| ||||||| |||||    
T  29895330 caataacaaattgctcaac 29895312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 684 - 884
Target Start/End: Original strand, 29920067 - 29920267
Alignment:
Q  684 ccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaagacagtcccccaacacaccaata 783  Q
    |||||||| |||||  || ||||||||||  | |||||| |  || ||| |||||||||||  ||||||| || |||| ||| | ||||||||||||| |    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaaga 29920166  T
Q  784 gttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaa 883  Q
    ||||||||||    |||||| || |||||  || | |||| ||| ||||||| ||| ||||| |||| |||||  || ||||||||| ||||||||||||    
T  29920167 gttggttctacaagtggcacttcatcaaatccacggggcagtaaatactgatggtaggtctctgtccccaaatggagagaaacaataacaaattgttcaa 29920266  T
Q  884 c 884  Q
    |    
T  29920267 c 29920267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 984 - 1049
Target Start/End: Original strand, 29476676 - 29476741
Alignment:
Q  984 aggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacatt 1049  Q
    ||||||||| |||||||||||||| ||||||||||| ||||| || ||||| | ||||||||||||    
T  29476676 aggaacaacggggaaactttgaatctctctccaaacattatctccaaaactgagaattctcacatt 29476741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 680 - 878
Target Start/End: Complemental strand, 29899424 - 29899220
Alignment:
Q  680 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc------gctttccttgtaacgataagaaaaacaaagacagtcccccaa 773  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||| |||||      | | |  ||||||  | ||||||||||||| ||| |||||||    
T  29899424 gagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatcaaaattggtattattgtaaaaacaagaaaaacaaaggcagccccccaa 29899325  T
Q  774 cacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaagcgaaacaatacca 873  Q
    ||||||||  ||||| || |  |  ||||| || |||||  || ||||||| | |||||| || |||||||| |||  ||||||||| ||||||||| ||    
T  29899324 cacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29899225  T
Q  874 aattg 878  Q
    |||||    
T  29899224 aattg 29899220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 646 - 730
Target Start/End: Complemental strand, 14076762 - 14076678
Alignment:
Q  646 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14076762 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 646 - 730
Target Start/End: Complemental strand, 14386790 - 14386706
Alignment:
Q  646 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    ||||||||||  | |||||||||| |||| ||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  14386790 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 972 - 1052
Target Start/End: Original strand, 29454436 - 29454516
Alignment:
Q  972 gtccaaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgct 1052  Q
    |||||||  ||||||| |||| |||||||||| ||||||||||||||| ||||||  |||||||| |||| | ||||||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgct 29454516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 646 - 725
Target Start/End: Original strand, 660833 - 660912
Alignment:
Q  646 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 725  Q
    ||||||||||  | |||||||||| |||||||| |||||||||| |||||||| | ||||| |||||  |||||||||||    
T  660833 atttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataac 660912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 997 - 1063
Target Start/End: Complemental strand, 24391123 - 24391057
Alignment:
Q  997 aaactttgaatatctctccaaacgttatcacccaaacttaaaattctcacattgctactcctttgac 1063  Q
    ||||||||||||| ||||||||  |||||||||||||| |||| ||||||||  |||||| ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatctctactcatttgac 24391057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 980 - 1034
Target Start/End: Complemental strand, 29106540 - 29106486
Alignment:
Q  980 caagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaact 1034  Q
    |||||||| ||||||||||||||| || |||||||||||| |||||||| |||||    
T  29106540 caagaggatcaaccgggaaactttcaacatctctccaaacattatcaccaaaact 29106486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 981 - 1042
Target Start/End: Original strand, 29445989 - 29446050
Alignment:
Q  981 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattc 1042  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||||| | ||||| |||||    
T  29445989 aagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaattc 29446050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 638 - 706
Target Start/End: Original strand, 19351047 - 19351115
Alignment:
Q  638 tataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 706  Q
    |||||||||| |||||||| | | |||||||| | ||||||||||||||||| || ||||| |||||||    
T  19351047 tataatcaatgtgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaatt 19351115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 983 - 1039
Target Start/End: Original strand, 19351386 - 19351442
Alignment:
Q  983 gaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaa 1039  Q
    ||||||||| ||| |||||| |||||||||||||||| ||||||| |||||| ||||    
T  19351386 gaggaacaatcggtaaacttggaatatctctccaaacattatcactcaaactaaaaa 19351442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 975 - 1039
Target Start/End: Complemental strand, 26237345 - 26237281
Alignment:
Q  975 caaaacaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaa 1039  Q
    ||||| ||||||||| ||||| ||||||||||||| |||||||  |||| |||||||||| ||||    
T  26237345 caaaataagaggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaa 26237281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 680 - 731
Target Start/End: Complemental strand, 29106864 - 29106813
Alignment:
Q  680 gagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatc 731  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||| |||||    
T  29106864 gagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatc 29106813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1204 - 1246
Target Start/End: Complemental strand, 29106319 - 29106277
Alignment:
Q  1204 gtggctgggttcaataaacggagccagtactcttgataatcgt 1246  Q
    |||||||||||| ||||||||||||||||||||  ||||||||    
T  29106319 gtggctgggttccataaacggagccagtactctatataatcgt 29106277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 997 - 1046
Target Start/End: Original strand, 19637584 - 19637633
Alignment:
Q  997 aaactttgaatatctctccaaacgttatcacccaaacttaaaattctcac 1046  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||| ||||||    
T  19637584 aaactttgaatatttctccaaactttatcaccaaaactaaaaactctcac 19637633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 639 - 885
Target Start/End: Complemental strand, 3625825 - 3625579
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||| | ||||||||  | |||||||||| |||| ||| |||||||||| ||||||||||||||||||||||  ||||||||||  | || | || ||    
T  3625825 ataatctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttacc 3625726  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||||||  ||||||||||||||| ||||||||||||||||||| | |||||||||| |  |||||||  |||||  || ||||||   | || |||||||    
T  3625725 ttgtaagaataagaaaaacaaaggcagtcccccaacacaccaacatttggttctataggaggcaccttatcaaatccacgaggcagccaatagtgattgt 3625626  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaaca 885  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||||    
T  3625625 atgtctcagtccccaaatcaagtgaaacaataacaaattgctcaaca 3625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 3e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 649 - 870
Target Start/End: Complemental strand, 3557807 - 3557586
Alignment:
Q  649 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 748  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| |||||||||||  ||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaat 3557708  T
Q  749 aagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagt 848  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||    || |||| ||| |||||| |  |||||||    || || ||||||| ||||||    
T  3557707 aagaaaaacaaagacagtccctcaacacaccaacggttggctcctcagtcggcatctcatcaaaaccccgaggcaaccgatattggttgtatgactcagt 3557608  T
Q  849 cctcaaatcaagcgaaacaata 870  Q
    || ||||||||| |||||||||    
T  3557607 ccccaaatcaagtgaaacaata 3557586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 639 - 884
Target Start/End: Original strand, 3560937 - 3561182
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttcc 738  Q
    |||||| | ||||||||| | |||||||||| |||| ||| |||||||||| ||||||||||||||||| ||||  ||||| ||||  |||||| |||||    
T  3560937 ataatctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttcc 3561036  T
Q  739 ttgtaacgataagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgt 838  Q
    ||||||  ||||||||||||||| || |||||||| ||||||| | | || |||   |  || ||||  |||||| |  ||||||| || || |||||||    
T  3561037 ttgtaagaataagaaaaacaaaggcaatcccccaagacaccaagattaggctctgcaggcggtaccttatcaaaaccccgaggcaacaaatattgattgt 3561136  T
Q  839 atgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    |||||||||| | || |||||||||||||||| |||| || |||||    
T  3561137 atgtctcagttcccagatcaagcgaaacaataacaaactgctcaac 3561182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 649 - 788
Target Start/End: Complemental strand, 3565825 - 3565686
Alignment:
Q  649 tgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgat 748  Q
    |||||||| | |||||||||| |||| ||| |||||||||| |||||||||||||||| |||||  ||||||||||  |||||| ||| ||| |||| ||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaat 3565726  T
Q  749 aagaaaaacaaagacagtcccccaacacaccaatagttgg 788  Q
    ||||||||||||| ||||||| ||||||||||| ||||||    
T  3565725 aagaaaaacaaaggcagtccctcaacacaccaacagttgg 3565686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 648 - 885
Target Start/End: Original strand, 1686273 - 1686510
Alignment:
Q  648 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacga 747  Q
    ||||||||| | |||||||  | |||| ||| |||||||||| || ||||| ||||||| |||||  ||||||||||  | || | |   ||| |||  |    
T  1686273 ttgaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaa 1686372  T
Q  748 taagaaaaacaaagacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcag 847  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||    ||||||||  ||||| | ||||||||    || ||||||||||||||||    
T  1686373 taagaaaaacaaaggcagtcccccaacacaccaacagttggctctataagcggcacctcagcaaaaccctgaggcaaccgatattgattgtatgtctcag 1686472  T
Q  848 tcctcaaatcaagcgaaacaataccaaattgttcaaca 885  Q
    ||| ||||| ||| ||||||||| |||  |||||||||    
T  1686473 tccccaaattaagtgaaacaataacaatctgttcaaca 1686510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 660 - 730
Target Start/End: Complemental strand, 53774910 - 53774840
Alignment:
Q  660 ataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    |||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||||||||| ||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaat 53774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 981 - 1046
Target Start/End: Complemental strand, 3565466 - 3565401
Alignment:
Q  981 aagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctcac 1046  Q
    |||||||||| |||||||||||| ||||| ||||||||| |||||||| ||||| |||| ||||||    
T  3565466 aagaggaacagccgggaaactttcaatatttctccaaacattatcacctaaactgaaaactctcac 3565401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 646 - 730
Target Start/End: Original strand, 11970968 - 11971052
Alignment:
Q  646 atttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    ||||||||||  | ||||||||||||||| ||| |||||||||| ||||| || ||||||| |||||  ||||||||||| ||||    
T  11970968 atttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaat 11971052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 982 - 1045
Target Start/End: Original strand, 1686634 - 1686697
Alignment:
Q  982 agaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaattctca 1045  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||||| ||||| |||| |||||    
T  1686634 agaggaataaccgggaaactttcaatatttctccaaacattatcacctaaactgaaaactctca 1686697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 661 - 722
Target Start/End: Original strand, 53430100 - 53430161
Alignment:
Q  661 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatat 722  Q
    ||||||||| |||||||| ||||||||||||||||  ||||| |||||||||  ||||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1204 - 1241
Target Start/End: Original strand, 3561517 - 3561554
Alignment:
Q  1204 gtggctgggttcaataaacggagccagtactcttgata 1241  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  3561517 gtggctgggttccataaacggagccagtaatcttgata 3561554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 641 - 730
Target Start/End: Original strand, 11981664 - 11981753
Alignment:
Q  641 aatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    |||||||||||||||    |||||||||| |||| ||| ||||||| || ||||| || ||||||| |||||  ||||||||||| ||||    
T  11981664 aatcaatttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaat 11981753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 661 - 869
Target Start/End: Original strand, 24330900 - 24331108
Alignment:
Q  661 taactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaa 760  Q
    ||||||| | |||||| | ||||||||||||||||||||||||||| |||||  | ||||||||| |||||| ||||||||||   ||| ||||||||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaa 24330999  T
Q  761 gacagtcccccaacacaccaatagttggttctatggttggcacctcgtcaaaatcatgaggcaataagtactgattgtatgtctcagtcctcaaatcaag 860  Q
    ||||| ||| ||| |||||||||||||| ||| | |  || || || |||||| |||||||||  | ||| |||||||||||||| |||  |||||||||    
T  24331000 gacagcccctcaatacaccaatagttggctctttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaag 24331099  T
Q  861 cgaaacaat 869  Q
     ||||||||    
T  24331100 agaaacaat 24331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 662 - 791
Target Start/End: Original strand, 29597554 - 29597683
Alignment:
Q  662 aactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaatcgctttccttgtaacgataagaaaaacaaag 761  Q
    |||||||| |||||||| |||||||||| | |||||| |||||||   |||  ||||||||||| ||||   |||||||| || | | ||||||||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaacaaag 29597653  T
Q  762 acagtcccccaacacaccaatagttggttc 791  Q
     | ||||  ||| ||| |||||||||||||    
T  29597654 gcggtccagcaaaacagcaatagttggttc 29597683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 639 - 706
Target Start/End: Complemental strand, 14514991 - 14514924
Alignment:
Q  639 ataatcaatttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatt 706  Q
    |||||| ||||||||||   ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  14514991 ataatctatttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaatt 14514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 838 - 883
Target Start/End: Complemental strand, 14514775 - 14514730
Alignment:
Q  838 tatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaa 883  Q
    |||||||| ||||||||||||||||| |||| | ||||||||||||    
T  14514775 tatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 659 - 730
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  659 tataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataaccaaat 730  Q
    ||||||||||| |||||||| |||||||||| |||||||| ||||||| |||||  ||||| ||||| ||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 648 - 725
Target Start/End: Original strand, 6935206 - 6935283
Alignment:
Q  648 ttgaagatcgttataactaattctaaggaatggagtccaagaatcttcaaccccaaatttcttcacgtgccatataac 725  Q
    |||||||| | ||||||||||| ||||||||  ||||||||| |||| ||| ||||||| |||||  ||||| |||||    
T  6935206 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataac 6935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 33; Significance: 0.000000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 828 - 884
Target Start/End: Original strand, 13898 - 13954
Alignment:
Q  828 gtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    ||||||||||||||||||||| |||||||| || ||||||||| |||| || |||||    
T  13898 gtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaac 13954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 828 - 884
Target Start/End: Original strand, 22733 - 22789
Alignment:
Q  828 gtactgattgtatgtctcagtcctcaaatcaagcgaaacaataccaaattgttcaac 884  Q
    ||||||||||||||||||||| |||||||| || ||||||||| |||| || |||||    
T  22733 gtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaac 22789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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