View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9278_low_3 (Length: 867)

Name: NF9278_low_3
Description: NF9278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9278_low_3
NF9278_low_3
[»] chr5 (6 HSPs)
chr5 (53-310)||(30848940-30849197)
chr5 (682-771)||(24528548-24528637)
chr5 (651-748)||(37405066-37405163)
chr5 (681-772)||(25258287-25258378)
chr5 (681-772)||(25322077-25322168)
chr5 (682-771)||(41666980-41667069)
[»] chr6 (5 HSPs)
chr6 (652-771)||(6542930-6543049)
chr6 (682-747)||(10145761-10145826)
chr6 (681-787)||(8001522-8001627)
chr6 (682-771)||(4868800-4868889)
chr6 (682-771)||(9705028-9705117)
[»] scaffold0048 (1 HSPs)
scaffold0048 (681-771)||(81849-81939)
[»] chr4 (4 HSPs)
chr4 (681-771)||(6218211-6218301)
chr4 (682-771)||(40717428-40717517)
chr4 (682-771)||(35609698-35609787)
chr4 (682-771)||(52559575-52559664)
[»] chr8 (6 HSPs)
chr8 (651-747)||(38475724-38475820)
chr8 (682-771)||(24532408-24532497)
chr8 (706-771)||(31197647-31197711)
chr8 (642-726)||(44931214-44931298)
chr8 (682-747)||(7267476-7267541)
chr8 (682-771)||(41790667-41790755)
[»] scaffold0481 (1 HSPs)
scaffold0481 (682-771)||(3458-3547)
[»] chr3 (5 HSPs)
chr3 (682-770)||(4155332-4155420)
chr3 (682-754)||(4155567-4155639)
chr3 (682-771)||(1723063-1723152)
chr3 (221-282)||(26561473-26561534)
chr3 (682-771)||(54368524-54368613)
[»] chr7 (5 HSPs)
chr7 (684-771)||(33996298-33996385)
chr7 (706-771)||(4506964-4507029)
chr7 (682-771)||(25620144-25620233)
chr7 (682-771)||(26239903-26239992)
chr7 (682-771)||(28080673-28080761)
[»] chr2 (2 HSPs)
chr2 (682-753)||(37769948-37770019)
chr2 (682-771)||(40379431-40379520)
[»] chr1 (3 HSPs)
chr1 (651-701)||(11524974-11525024)
chr1 (651-701)||(11525189-11525239)
chr1 (681-771)||(30369842-30369932)
[»] scaffold0129 (1 HSPs)
scaffold0129 (682-771)||(14311-14400)
[»] scaffold0024 (1 HSPs)
scaffold0024 (681-738)||(89573-89630)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 30849197 - 30848940
Alignment:
Q  53 gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30849197 gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc 30849098  T
Q  153 ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactttatcctggaactcagct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  30849097 ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactctaccctggaactcagct 30848998  T
Q  253 tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctcaggtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30848997 tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctcaggtac 30848940  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 24528548 - 24528637
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | ||||||||||||| ||| | ||||||||||    
T  24528548 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagc 24528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 748
Target Start/End: Original strand, 37405066 - 37405163
Alignment:
Q  651 cccacatcggttgatagatggtctgaataaatgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccat 748  Q
    |||||||| ||||| |||||||||||| || ||||| ||||| ||| ||||    |||||||||| ||||||||| ||||| | |||||| |||||||    
T  37405066 cccacatcagttgagagatggtctgaaaaagtgtttgtaagtgggggcaatccccacctcaaaagccggttttgtggggttgtattagacccaaccat 37405163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 772
Target Start/End: Complemental strand, 25258378 - 25258287
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagct 772  Q
    |||||||| ||| ||| ||||  | |||||| ||||||||||||| ||||| ||||| || |||||| |||||| ||| | |||||||||||    
T  25258378 atgtttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagct 25258287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 772
Target Start/End: Complemental strand, 25322168 - 25322077
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagct 772  Q
    |||||||| ||| ||| ||||  | |||||| ||||||||||||| ||||| ||||| || |||||| |||||| ||| | |||||||||||    
T  25322168 atgtttatcagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagct 25322077  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 41667069 - 41666980
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  41667069 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 41666980  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 652 - 771
Target Start/End: Complemental strand, 6543049 - 6542930
Alignment:
Q  652 ccacatcggttgatagatggtctgaataaatgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgat 751  Q
    ||||||||| | | |||||||||||  |  ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||||| |||||| |||    
T  6543049 ccacatcggataagagatggtctgacaatgtgtttataagtgggggcaatcatcacctcagaagccggttttgtggggttgtgttagacccaaccacgat 6542950  T
Q  752 ttcaaagtttgtatcagagc 771  Q
    ||||||| | ||||||||||    
T  6542949 ttcaaagatggtatcagagc 6542930  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 747
Target Start/End: Complemental strand, 10145826 - 10145761
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaacca 747  Q
    ||||||||| |||||||||| || |||||| ||||| ||||||||||||| |||||| | ||||||    
T  10145826 tgtttataaatagggacaattttcacctcacaagtcagttttgtagggttgtgttaggctcaacca 10145761  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 787
Target Start/End: Complemental strand, 8001627 - 8001522
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagctctacttca 780  Q
    |||||||||||| ||| |||| || |||||| |||||| |||||| ||||| |||||| | ||||||  ||||| ||| | ||||||||| ||| ||| |    
T  8001627 atgtttataagtgggggcaatcttcacctcataagtcgattttgttgggttgtgttaggcccaaccacaatttctaagatggtatcagag-tctccttaa 8001529  T
Q  781 agatccg 787  Q
    |||||||    
T  8001528 agatccg 8001522  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 4868889 - 4868800
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  4868889 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 4868800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 9705028 - 9705117
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||||||||||||| ||||| |||||| | ||||||  ||||| ||| | ||||||||||    
T  9705028 tgtttataagtgggggcaatcatcacctcacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagc 9705117  T

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Target: scaffold0048 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 681 - 771
Target Start/End: Original strand, 81849 - 81939
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    |||||||||||| |||||||| || |||| | ||||||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  81849 atgtttataagtggggacaattttcaccttacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 81939  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 681 - 771
Target Start/End: Original strand, 6218211 - 6218301
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    |||||||||||| ||| |||| || |||||| ||| ||||||||| | ||| ||||||||||||||| |||||| ||| | ||||||||||    
T  6218211 atgtttataagtgggggcaatcttcacctcacaagacggttttgtggagttgtgttagacacaaccacgatttctaagatggtatcagagc 6218301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 40717517 - 40717428
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||||||||||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  40717517 tgtttataagtgggggcaatcctcacctcaaaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 40717428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 35609787 - 35609698
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| ||| |||| ||||||||||||| ||| | ||||||||||    
T  35609787 tgtttataagtggggccaatcctcacctcacaagccggttttgtggggttgtgtaagacccaaccatgatttctaagatggtatcagagc 35609698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 52559575 - 52559664
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | ||||||||||||| ||| | ||||||||||    
T  52559575 tgtttataagtgggggcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatagtatcagagc 52559664  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 747
Target Start/End: Original strand, 38475724 - 38475820
Alignment:
Q  651 cccacatcggttgatagatggtctgaataaatgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaacca 747  Q
    |||||||||||||| ||||||  |||| || ||||||||||| ||| ||||  | |||||| ||| ||||||||||||||| |||||| | ||||||    
T  38475724 cccacatcggttgaaagatggcttgaacaagtgtttataagtgggggcaatcctcacctcacaagccggttttgtagggttgtgttaggcccaacca 38475820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 24532497 - 24532408
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | ||||||||||||| ||| | ||||||||||    
T  24532497 tgtttataagtgggggcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagc 24532408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 771
Target Start/End: Original strand, 31197647 - 31197711
Alignment:
Q  706 acctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    |||||||||||||||||||||||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  31197647 acctcaaaagtcggttttgtagggttgtgttaggcccaacca-gatttctaagatggtatcagagc 31197711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 642 - 726
Target Start/End: Complemental strand, 44931298 - 44931214
Alignment:
Q  642 taaaagatccccacatcggttgatagatggtctgaataaatgtttataagtagggacaatatttacctcaaaagtcggttttgta 726  Q
    |||||||  |||||||||||||| |||||| |||||||| ||||||||||| ||| ||||  |  ||||| ||| ||||||||||    
T  44931298 taaaagagtcccacatcggttgagagatggcctgaataagtgtttataagtgggggcaatcctcgcctcacaagccggttttgta 44931214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 747
Target Start/End: Complemental strand, 7267541 - 7267476
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaacca 747  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||||||||| |||||||| ||||||    
T  7267541 tgtttataagtgggggcaatcatcacctcacaagccggttttgtagggttgtgttagacccaacca 7267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 41790667 - 41790755
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||||||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  41790667 tgtttataagtggggacaatcctcacctcataagccggttttgt-gggttgtgttaggcccaaccacgatttctaagatggtatcagagc 41790755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 3547 - 3458
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| |||||||| || |||||| ||| ||||||||| ||||| |||||||| ||| || |||||| ||  | ||||||||||    
T  3547 tgtttataagtggggacaatcttcacctcacaagccggttttgtggggttgtgttagacccaatcacgatttctaatatggtatcagagc 3458  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 682 - 770
Target Start/End: Original strand, 4155332 - 4155420
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagag 770  Q
    ||||||||||| ||| ||||  | |||||||||| ||||||||| ||||| |||||| | |||||| |||||| ||| | |||||||||    
T  4155332 tgtttataagtgggggcaatcctcacctcaaaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagag 4155420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 682 - 754
Target Start/End: Original strand, 4155567 - 4155639
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttc 754  Q
    ||||||||||| ||||||||  | |||||||||| ||||||| ||||||| |||||| | |||||| ||||||    
T  4155567 tgtttataagtggggacaatcctcacctcaaaagccggttttttagggttgtgttaggcccaaccacgatttc 4155639  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 1723152 - 1723063
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  1723152 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 1723063  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 26561534 - 26561473
Alignment:
Q  221 aatcttactcaactttatcctggaactcagcttcctgataatcttatctccaccattcgtaa 282  Q
    ||||||||||| ||||||||||| |  ||||||||||| || ||||| |||| |||||||||    
T  26561534 aatcttactcagctttatcctggtagccagcttcctgaaaagcttatgtccaacattcgtaa 26561473  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 54368524 - 54368613
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||| | ||||| |||||||| |||||| |||||| ||| | ||||||||||    
T  54368524 tgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttagacccaaccacgatttctaagatggtatcagagc 54368613  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 33996385 - 33996298
Alignment:
Q  684 tttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||| ||| |||| || |||||| ||||||||||||| | ||| |||||| | |||||| |||||| ||| | ||||||||||    
T  33996385 tttataagtgggggcaatcttcacctcacaagtcggttttgtggagttgtgttaggcccaaccacgatttctaagatggtatcagagc 33996298  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 771
Target Start/End: Original strand, 4506964 - 4507029
Alignment:
Q  706 acctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    |||||| ||||||||||| | ||||| |||||||| |||| | |||||| ||| ||||||||||||    
T  4506964 acctcacaagtcggttttatggggttgtgttagacccaactacgatttctaagattgtatcagagc 4507029  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 25620144 - 25620233
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  25620144 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 25620233  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 26239992 - 26239903
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| |||||||| |||| ||||| |||||||| ||||||  ||||| ||| | ||||||||||    
T  26239992 tgtttataagtgggggcaatcctcacctcacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagatggtatcagagc 26239903  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 28080673 - 28080761
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||||||| |||| || || ||| ||||||||||||| ||||| |||||||  |||||| |||||| ||| |  |||||||||    
T  28080673 tgtttataagtaggg-caattttcacttcacaagtcggttttgtggggttatgttagatccaaccacgatttctaagatgatatcagagc 28080761  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 753
Target Start/End: Complemental strand, 37770019 - 37769948
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgattt 753  Q
    ||||||||||| ||| |||| || |||||| ||| ||||||||| ||||| |||||||| |||||| |||||    
T  37770019 tgtttataagtgggggcaatcttcacctcataagccggttttgtggggttgtgttagacccaaccacgattt 37769948  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Complemental strand, 40379520 - 40379431
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||| ||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| |||||| ||| | ||||||||||    
T  40379520 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 40379431  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 701
Target Start/End: Original strand, 11524974 - 11525024
Alignment:
Q  651 cccacatcggttgatagatggtctgaataaatgtttataagtagggacaat 701  Q
    |||||||||||||| ||||||| ||||||| |||||||||| |||| ||||    
T  11524974 cccacatcggttgagagatggtttgaataagtgtttataagcaggggcaat 11525024  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 701
Target Start/End: Original strand, 11525189 - 11525239
Alignment:
Q  651 cccacatcggttgatagatggtctgaataaatgtttataagtagggacaat 701  Q
    |||||||||||||| ||||||| ||||||| |||||||||| |||| ||||    
T  11525189 cccacatcggttgagagatggtttgaataagtgtttataagcaggggcaat 11525239  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 771
Target Start/End: Original strand, 30369842 - 30369932
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    |||||||||||||||| ||||  | |||||| |||   ||||||| ||||| |||||| | |||||| |||||| ||| ||||||||||||    
T  30369842 atgtttataagtaggggcaatcctcacctcacaagatagttttgtggggttgtgttaggcccaaccacgatttctaagattgtatcagagc 30369932  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 14311 - 14400
Alignment:
Q  682 tgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttagacacaaccatgatttcaaagtttgtatcagagc 771  Q
    ||||||||||| ||||||||  | |||||| ||| ||||||||| ||||| |||||| | |||||| | |||| ||| | ||||||||||    
T  14311 tgtttataagtggggacaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagatggtatcagagc 14400  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 738
Target Start/End: Complemental strand, 89630 - 89573
Alignment:
Q  681 atgtttataagtagggacaatatttacctcaaaagtcggttttgtagggttttgttag 738  Q
    |||||||||||| ||||||||||| |||| | |||||||||||||  |||| ||||||    
T  89630 atgtttataagtggggacaatattcaccttacaagtcggttttgtgaggttgtgttag 89573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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