View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9278_low_4 (Length: 557)
Name: NF9278_low_4
Description: NF9278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9278_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 34 - 465
Target Start/End: Complemental strand, 3896317 - 3895885
Alignment:
| Q |
34 |
aaataattagcttcaaatttaagaagtattgcatagcaaaataatttttacttagaatgcatatcaggctatgtttcaagtaacagtgtaggttttcaac |
133 |
Q |
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| T |
3896317 |
aaataattagcttcaaatttaagaagtattgcatggcaaaataatttttacttagaatgcatatcaggctatgtttcaagaaactgtgtaggttttcagc |
3896218 |
T |
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| Q |
134 |
acattcagaaagtcggcactgttaagaaaggacaaaatgccacactcttgctagtcgaatgattaagattgtatcattagaagtcaatggattgtagtct |
233 |
Q |
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| T |
3896217 |
acatttagaaagtcagcactgttaagaaaggacaaaatgccacactcttgctagttgaatgcttaagattgtatcattagaagtcaatgggttgtagtct |
3896118 |
T |
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| Q |
234 |
taccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
333 |
Q |
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| T |
3896117 |
tactggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
3896018 |
T |
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| Q |
334 |
tcaaatctgcaataagctcatatctggttcatgaatgagattgttagtggcaattacaaa-----------gcatcccaaattcttatttctaacattgg |
422 |
Q |
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| T |
3896017 |
tcaaatctgcaataa--------aagaatcatga--gagattgttaattgcaattacaaaggatcctatgcgcatcccaaactcttatttctaacattgg |
3895928 |
T |
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| Q |
423 |
aatgaaacaagaaaatgtgttattaacgtattgttgttattga |
465 |
Q |
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| T |
3895927 |
aatgaaacaagaaaatgtgttaataatgtattgttgttattga |
3895885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 466 - 542
Target Start/End: Complemental strand, 3895728 - 3895652
Alignment:
| Q |
466 |
aaaacatcaaatggactgctatgaaacggtgagccatcttctgcattctcgtaacaagtgtttgaccaagttcttga |
542 |
Q |
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| T |
3895728 |
aaaacctcaaatggactgctatgaaacggtgagccatcttctgcattctcgtaacaattgtttgaccaagttcttga |
3895652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 43364791 - 43364867
Alignment:
| Q |
262 |
atttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggttcaaa |
338 |
Q |
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| T |
43364791 |
atttcaccaagttcttttctttccttttctcccccaccataatagcaaccagagaatgcaagcatatccggttcaaa |
43364867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 41600471 - 41600587
Alignment:
| Q |
222 |
ggattgtagtcttaccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggct |
321 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||| || |
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| T |
41600471 |
ggattgtagtcttacaggcaatgttgtccacctttttctgatttcaccaagctcttgtctttctttttcacccccaccaaaataacaacctgaaaatgcc |
41600570 |
T |
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| Q |
322 |
agcatatctggttcaaa |
338 |
Q |
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||||| ||||| ||||| |
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| T |
41600571 |
agcatgtctggctcaaa |
41600587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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