View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9278_low_6 (Length: 276)
Name: NF9278_low_6
Description: NF9278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9278_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 41658662 - 41658904
Alignment:
| Q |
20 |
caacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatg |
119 |
Q |
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| T |
41658662 |
caacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaacttgtggacagaagctttcagatcatcgacg |
41658761 |
T |
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| Q |
120 |
acattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtga |
219 |
Q |
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| T |
41658762 |
gcattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtga |
41658861 |
T |
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| Q |
220 |
aatcaatgacgggtattgattgctccgagtcttggagaataat |
262 |
Q |
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| T |
41658862 |
aatcaatgatgggtattgattgctccgagtcttggggaataat |
41658904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 13845711 - 13845779
Alignment:
| Q |
96 |
acagaagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccat |
164 |
Q |
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| T |
13845711 |
acagaagctttgagatcatcaagaacattaataggcatcccatgattcacaatttggaagaaaccccat |
13845779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 13845792 - 13845824
Alignment:
| Q |
207 |
tcccagtttgtgaaatcaatgacgggtattgat |
239 |
Q |
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| T |
13845792 |
tcccagtttgtgaaatcaatgatgggtattgat |
13845824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 14629988 - 14630209
Alignment:
| Q |
20 |
caacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatg |
119 |
Q |
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|||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | | |
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| T |
14629988 |
caacctcacaacttcaggaggtgaattctctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagctttcaaatcatcaagg |
14630087 |
T |
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| Q |
120 |
acattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtga |
219 |
Q |
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| T |
14630088 |
acgttaatgggtataccatgattcacaatttggaagaaacccaaattagttgcagcactaaaaattgaatcttgaacatctgggtcatcccagtttgtga |
14630187 |
T |
|
| Q |
220 |
aatcaatgacgggtattgattg |
241 |
Q |
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| T |
14630188 |
aatcaatgatgggtattgattg |
14630209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 14645055 - 14645274
Alignment:
| Q |
19 |
acaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgat |
118 |
Q |
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||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | |
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| T |
14645055 |
acaacctcacaacttcaggtggtgaat---ctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagctttcaaatcatcaag |
14645151 |
T |
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| Q |
119 |
gacattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtg |
218 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | ||| |||||||||||| |
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| T |
14645152 |
gacgttaatgggtataccatgattcacaatttggaagaaacccaacttagttgcagcactaaaaattgaatcttgaacatctgggtcatcccagtttgtg |
14645251 |
T |
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| Q |
219 |
aaatcaatgacgggtattgattg |
241 |
Q |
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|||||||||| |||||||||||| |
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| T |
14645252 |
aaatcaatgatgggtattgattg |
14645274 |
T |
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