View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_high_16 (Length: 292)
Name: NF9279_high_16
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 18292517 - 18292768
Alignment:
| Q |
13 |
tttggtgttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacatatgcgcaatcttttgactggtt |
112 |
Q |
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| T |
18292517 |
tttggtgttatggaaa-aatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacatatgcgcaatcttttgactggtt |
18292615 |
T |
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| Q |
113 |
gaatggaaaaaattacttccttgcttttgactatcatatggcgactaaatccttttaactccttgtaatagttgtctttattttctctttgttgtaccat |
212 |
Q |
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| T |
18292616 |
gaatggaaaaaattacttccttgcttttgactatcatatggtgactaaatccttttaactccttgtaatagttgtctttattttctctttgctgtaccat |
18292715 |
T |
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| Q |
213 |
tatttttctgtttgcttctctctagcacttcttctgcagagtaagtaaagaatgttg |
269 |
Q |
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| T |
18292716 |
tatttttctgtttgct----tctagcgcttcttctgcagagtaagtaaagaatgttg |
18292768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 22583704 - 22583655
Alignment:
| Q |
23 |
tggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatcca |
72 |
Q |
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| T |
22583704 |
tggaaagaaataaatgcaagaatcttcaagaataagaaagataatatcca |
22583655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 40155447 - 40155346
Alignment:
| Q |
16 |
ggtgttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacat--atgcgcaatcttttgactggttg |
113 |
Q |
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| T |
40155447 |
ggtgctatggaaagaaagatatgcaagaatcttcaagaataaaaatgataatatccaccacttgctcgacaacataaaagcgcaatcttttgattggttg |
40155348 |
T |
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| Q |
114 |
aa |
115 |
Q |
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|| |
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| T |
40155347 |
aa |
40155346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 32639317 - 32639246
Alignment:
| Q |
20 |
ttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacata |
91 |
Q |
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|||||||||||| |||||||||| |||||||| |||| | ||||||||| ||||||||||| || |||||| |
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| T |
32639317 |
ttatggaaagaaagaaatgcaagcatcttcaagcataaaaatgataatatacaccacttgctcgacaacata |
32639246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 18747697 - 18747596
Alignment:
| Q |
16 |
ggtgttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacat--atgcgcaatcttttgactggttg |
113 |
Q |
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|||||||||||||||| ||||||||| |||| |||||| | | |||||||||||||||||| ||||| ||| | | ||||||||||||||||||||| |
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| T |
18747697 |
ggtgttatggaaagaaagaaatgcaacaatcaccaaaaacataaatgataatatccaccactttcttgacaacgttaaggcgcaatcttttgactggttg |
18747598 |
T |
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| Q |
114 |
aa |
115 |
Q |
| |
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|| |
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| T |
18747597 |
aa |
18747596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 33519315 - 33519368
Alignment:
| Q |
216 |
ttttctgtttgcttctctctagcacttcttctgcagagtaagtaaagaatgttg |
269 |
Q |
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|||||| |||| |||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
33519315 |
ttttctatttgtttctctctagcactccttgtgcagagtaagtaaagaatgttg |
33519368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 21589516 - 21589445
Alignment:
| Q |
20 |
ttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacata |
91 |
Q |
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|||||||||||| ||||| || |||||||||| ||||| | | |||||||| ||||||||||||| |||||| |
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| T |
21589516 |
ttatggaaagaaagaaattcaggaatcttcaagaataaaaataataatatctaccacttgcttgacaacata |
21589445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 134192 - 134262
Alignment:
| Q |
20 |
ttatggaaagaatgaaatgcaagaatcttcaaaaataagagtgataatatccaccacttgcttgaaaacat |
90 |
Q |
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|||||||||||| ||||||||||||||||||| ||| | | ||| ||| |||||||||||||| ||||| |
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| T |
134192 |
ttatggaaagaaagaaatgcaagaatcttcaagaattcaaataatactattcaccacttgcttgacaacat |
134262 |
T |
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