View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9279_low_11 (Length: 527)
Name: NF9279_low_11
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 52850310 - 52850799
Alignment:
| Q |
18 |
ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgttacacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52850310 |
ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgtcacacc |
52850409 |
T |
|
| Q |
118 |
caattcgaggtaaaataaatttgctgcttctcgagtagattttgaaatacaattcgcatttacatttgtaaacatgatcaaccatgttcattgattttca |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850410 |
caattcgaggtaaaatat-tttgctgcttctcgagtagattttgaaatacaattcgcagttacatttgtaaacatgatcaaccatgttcattgattttca |
52850508 |
T |
|
| Q |
218 |
ccggacaaattagtttattttgcatgtgtcatatttttgttatatatggtgcaagacataatgaccgatgtttcactgaaaatatgaagcatgtgatcat |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52850509 |
ccggacaagttagtttattttgcatgtgtcatatttttgttatatatggtgcaagacataatgactgatgtttcactgaaaatatgaagcatgtgatcat |
52850608 |
T |
|
| Q |
318 |
cccatgagatgaaacataatggctggtgtttcactttgaatactttacatcaaacacttgcataaagtcacaattatatgctatttttatgtcatatatc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850609 |
cccatgagatgaaacataatggctggtgtttcactttgaatgctttacatcaaacacttgcataaagtcacaattatatgctatttttatgtcatatatc |
52850708 |
T |
|
| Q |
418 |
aagttttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgagaggaaaatgctcagtaagcaagtgcataag |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52850709 |
aagttttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgagaggaaaatgctcagtaagcaagtgcataag |
52850799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University