View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_12 (Length: 523)
Name: NF9279_low_12
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_12 |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 26 - 397
Target Start/End: Complemental strand, 16928 - 16548
Alignment:
| Q |
26 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaagcttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16928 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaaacttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
16829 |
T |
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| Q |
126 |
attatcaat---------gtagaaacaaaaaacctcagagtcctccatccaagtcagttcatatataaattgtactcgaagagtgatgagaccctcttta |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828 |
attatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttcatatataaattgtactcgaagagtgatgagaccctcttta |
16729 |
T |
|
| Q |
217 |
gctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatggtaaaaactagaaaattattgaatgcaaattggttataactct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16728 |
gctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatggtaaaaactagaaaattattgaatgcaaattggttataactct |
16629 |
T |
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| Q |
317 |
tggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaacataaacaaagatgaacggaatgctgag |
397 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16628 |
tggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaacataaacaaagatgaacggaatgctgag |
16548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 507
Target Start/End: Complemental strand, 16504 - 16475
Alignment:
| Q |
478 |
aatttttccattatcatattcagatgagag |
507 |
Q |
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| T |
16504 |
aatttttccattatcatattcagatgagag |
16475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 26 - 397
Target Start/End: Original strand, 1401430 - 1401810
Alignment:
| Q |
26 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaagcttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401430 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaaacttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
1401529 |
T |
|
| Q |
126 |
a---------ttatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttcatatataaattgtactcgaagagtgatgagaccctcttta |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401530 |
attatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttcatatataaattgtactcgaagagtgatgagaccctcttta |
1401629 |
T |
|
| Q |
217 |
gctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatggtaaaaactagaaaattattgaatgcaaattggttataactct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401630 |
gctataattgcactattatgtagcaaaaattacacaacattaagcatgtaaagcatggtaaaaactagaaaattattgaatgcaaattggttataactct |
1401729 |
T |
|
| Q |
317 |
tggtggtattttggggaaactcttaacaatcctcggacaccacaattgtgaaacataaacaaagatgaacggaatgctgag |
397 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401730 |
tggtggtattttggggaaactcttaacaatcctcaaacatcacaattgtgaaacataaacaaagatgaacggaatgctgag |
1401810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 1376128 - 1376218
Alignment:
| Q |
42 |
atctgcaactaaattca-tatcacattgcatagaag--cttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaatatta |
129 |
Q |
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||||||||||||| || ||||||||||||||||| ||||||||| || ||||| |||| |||| |||| |||| |||||||||||||| |
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| T |
1376128 |
atctgcaactaaaatccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaaccaaatatta |
1376218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 507
Target Start/End: Original strand, 1401854 - 1401883
Alignment:
| Q |
478 |
aatttttccattatcatattcagatgagag |
507 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1401854 |
aatttttccattatcatattcagatgagag |
1401883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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