View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_15 (Length: 473)
Name: NF9279_low_15
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 17601645 - 17602094
Alignment:
| Q |
1 |
aaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaaagaagtacttat |
100 |
Q |
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| T |
17601645 |
aaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaaagaagtacttat |
17601744 |
T |
|
| Q |
101 |
tagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaaccattactctca |
200 |
Q |
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| T |
17601745 |
tagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaaccattactctca |
17601844 |
T |
|
| Q |
201 |
gctagaccaacatcatcaaacaaccacnnnnnnngctcgtatgtctgctattacagctgcttcagctattgtatctggtattggtccagaccaacgtggt |
300 |
Q |
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| T |
17601845 |
gctagaccaacatcatcaaacaacaacaaaaaaagctcgtatgtctgctattacagctgcttcagctattgtatc------tggtccagaccaacgtggt |
17601938 |
T |
|
| Q |
301 |
ctggaccagcccggtacagattcaaaagatattatcaaccagcagcctattcaacgtaggctgtgggtgaaagaccggcctaaagactggtgggagagct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17601939 |
ctggaccagcccggtacagattcaaaagatattatcaaccagcagcctattcaacgtaggctgtgggtgaaagaccggcctaaagactggtgggagagtt |
17602038 |
T |
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| Q |
401 |
gcaaccgtgaagatttcccggacgatgaatttcggcgatgttttcgaatgagtaaa |
456 |
Q |
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| T |
17602039 |
gcaaccgtgaagacttcccggacgatgaattccggcgatgttttcggatgagtaaa |
17602094 |
T |
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