View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_16 (Length: 464)
Name: NF9279_low_16
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 8715284 - 8715713
Alignment:
| Q |
19 |
agggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccga |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8715284 |
agggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccga |
8715383 |
T |
|
| Q |
119 |
agagcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatg |
218 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8715384 |
agagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatg |
8715483 |
T |
|
| Q |
219 |
taatcaccatataataaatctatgaagcaaacaagtggatctatatagctaactgcattgatgttatcctcccacataactgaaacttttgcaatagttg |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8715484 |
taatcaccagataataaatctatgaagcaaacaagtggatctatatagctaactgcattgatgttatcctcccacataactgaaacttttgcaatagttg |
8715583 |
T |
|
| Q |
319 |
ccgatgtttgttagtacatggaatcagcttgtggattatacaaccgcattaagcaaccaagcctgaaccacaaaatgtgtactatcaatcgttgtgttgg |
418 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8715584 |
ccgatgtttattagtacatggaatcagcttgtggattatacaaccgcatcaagcaaccaagcctgaaccacaaaatgtgtactatcaatcgtcgtgttgg |
8715683 |
T |
|
| Q |
419 |
taacatagaatgaacaatcaagtatataaa |
448 |
Q |
| |
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||||||||||||||||| |||||||||||| |
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| T |
8715684 |
taacatagaatgaacaaccaagtatataaa |
8715713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 5968863 - 5968435
Alignment:
| Q |
19 |
agggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5968863 |
agggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccga |
5968764 |
T |
|
| Q |
119 |
agagcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatg |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5968763 |
agagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacactg |
5968664 |
T |
|
| Q |
219 |
taatcaccatataataaatctatgaagcaaacaagtggatctatatagctaactgcattgatgttatcctcccacataactgaaacttttgcaatagttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
5968663 |
taatcaccatataataaatctatgaagcaaacaagtggatctatatagctaactgcattgatgtcatcctcccacataaccgaaacttttgcaatagttg |
5968564 |
T |
|
| Q |
319 |
ccgatgtttgttagtacatggaatcagcttgtggattatacaaccgcattaagcaaccaagcctgaaccacaaaatgtgtactatcaatcgttgtgttgg |
418 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||| | ||||||||||||| ||||||| |
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|
| T |
5968563 |
ccgatgtttattagtacgtggaatcagcttgtggattatacaaccacattaagaaaccaagcctaaacca-aaaatttatactatcaatcgtcgtgttgg |
5968465 |
T |
|
| Q |
419 |
taacatagaatgaacaatcaagtatataaa |
448 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
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|
| T |
5968464 |
taacatagaatgaacaaccaagtatataaa |
5968435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 5984872 - 5984675
Alignment:
| Q |
19 |
agggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccga |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5984872 |
agggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccga |
5984773 |
T |
|
| Q |
119 |
agagcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaa |
216 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||| |
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|
| T |
5984772 |
agagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataaagagcacacaa |
5984675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 5963728 - 5963533
Alignment:
| Q |
21 |
ggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccgaag |
120 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| || || |||| |
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|
| T |
5963728 |
ggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtcagtacatatactgaag |
5963629 |
T |
|
| Q |
121 |
agcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaa |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||| ||| ||||| ||||||| |
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|
| T |
5963628 |
agcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataaagaacacacaa |
5963533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 5935331 - 5935137
Alignment:
| Q |
21 |
ggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccgaag |
120 |
Q |
| |
|
|||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||||| || |||| |
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|
| T |
5935331 |
ggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaacccaaagaagcttgtcagtaagtaaactgaag |
5935232 |
T |
|
| Q |
121 |
agcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacaca |
215 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||| | |||| |||||| |||||||||||||| |||||| | ||||||| ||| ||||||| |||| |
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|
| T |
5935231 |
agcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgttgtgaactgcaaataaagagcgcaca |
5935137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 5628152 - 5628329
Alignment:
| Q |
21 |
ggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccgaag |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||| ||||| || | |
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| T |
5628152 |
ggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaatacacggatg |
5628251 |
T |
|
| Q |
121 |
agcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
198 |
Q |
| |
|
|||||||| |||| ||||| ||||| || | ||| ||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
5628252 |
agcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgctgtgaactg |
5628329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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