View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_18 (Length: 391)
Name: NF9279_low_18
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 2685357 - 2685710
Alignment:
| Q |
20 |
cttcaagcttttaaggcaacatggatacaatgtgtttccatctggtaactatctattttaattagatattcatcaaatttatcaaaacctaggaactaan |
119 |
Q |
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| T |
2685357 |
cttcaagcttttaaggcaacatggatacaatgtttttccatctggtaactatctattttaattagatattcatcaaatttatcaaaacctaggaactaat |
2685456 |
T |
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| Q |
120 |
nnnnnnnnnnnnggttgttatttattcatgaaattcagatatactaagcaacttcttagatgtgatggacaacaaattctctagtaatgctaaagatatc |
219 |
Q |
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| T |
2685457 |
ttttggttttttggttgttatttattcatgaaattcagatatactaagcaacttcttagatgtgatggacaataaattctctagtaatgctaaagatatt |
2685556 |
T |
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| Q |
220 |
atagagcttcttgaggcctcacatttgagtttagaagatgaaataatcttggatgatgccaaaatgtttgcaaaaaattggctcaaagatgctttcattt |
319 |
Q |
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| T |
2685557 |
atagagcttcttgaggcctcacatttgggtttagaagatgaaataatcttggatgatgccaaaatatttgcaaaaaattggctcaaagatgctttcattt |
2685656 |
T |
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| Q |
320 |
catattctatcaatatcaaggttgttgaaagagtggtccatgctttggagcttc |
373 |
Q |
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| T |
2685657 |
catattctatcaatatcaaggttgttgaaagagtggtccatgctttggagcttc |
2685710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 2680109 - 2680416
Alignment:
| Q |
20 |
cttcaagcttttaaggca-acatggatacaatgtgtttccatctggtaactatctattttaattagatattcatcaaatttatcaaaacctaggaactaa |
118 |
Q |
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||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2680109 |
cttcaggcttttaaggcacacatggatacaatgtttttccatctggtaactatctattttaattagatattcatcaaatttatcacaacctaggaactaa |
2680208 |
T |
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| Q |
119 |
nnnnnnnnnnnnnggttgttatttattcatgaaattcagatatactaagcaacttcttagatgtgatggacaacaaattctctagtaatgctaaagatat |
218 |
Q |
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| T |
2680209 |
tttttc--------gttgtcatt----catgaaattcagatatactaagcaacttcttagatgttatagacaacagattctctagtgatgctaaatattt |
2680296 |
T |
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| Q |
219 |
catagagcttcttgaggcctcacatttgagtttagaagatgaaataatcttggatgatgccaaaatgtttgcaaaaaattggctcaaagatgctttcatt |
318 |
Q |
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| T |
2680297 |
tatagagcttgttgaggcctcacatttgggcttagaagatgaaaaaatcttggatgtggccaaaatgtttgcaatattttagctcaaagatgctttcatt |
2680396 |
T |
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| Q |
319 |
tcatattctatcaatatcaa |
338 |
Q |
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| T |
2680397 |
tcatattctttcaatatcaa |
2680416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 2680432 - 2680469
Alignment:
| Q |
336 |
caaggttgttgaaagagtggtccatgctttggagcttc |
373 |
Q |
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| T |
2680432 |
caaggttgttgaaagagtggtccatgccttggagcttc |
2680469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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