View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9279_low_22 (Length: 380)
Name: NF9279_low_22
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 29357083 - 29356730
Alignment:
| Q |
9 |
gagaagcagagactagacaattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagac |
108 |
Q |
| |
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||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357083 |
gagaatcaaagacaagacaataaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagac |
29356984 |
T |
|
| Q |
109 |
taatatcctgttannnnnnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttc |
208 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29356983 |
taatatcctgttatttttttcaacacaacaaccatataacttaaccaaattttcatgctctacttcggagatcacgttaatctctgtcaagaactccttc |
29356884 |
T |
|
| Q |
209 |
accccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctgatcatccacaccgcaatacaattaaggttcgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356883 |
accccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctgatcatccacaccgcaatacaattaaggttcgt |
29356784 |
T |
|
| Q |
309 |
aatcatcgataataaaagcaacgaaaaaacaacgataagatagtagtctagatt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29356783 |
aatcatcgataataaaagcaacgaaaaaacaacgataagatagtagtctagatt |
29356730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 57 - 305
Target Start/End: Complemental strand, 29363803 - 29363555
Alignment:
| Q |
57 |
atttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaa |
156 |
Q |
| |
|
||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29363803 |
atttacctagaagtgttcgtgaaagactgttattctcaaggtaattgtagactaatatcctgttatttttttcaacacaacaaccatataacttaaccaa |
29363704 |
T |
|
| Q |
157 |
attttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagcagcaagtttt |
256 |
Q |
| |
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|||||| ||||||||| ||||||| || |||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| |||||| |
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|
| T |
29363703 |
attttcatgctctactgcggagatcacattaatctctgtcaagaactctttcaccccttgtcttgattcagccgaaagaacttttatagcagcgagtttt |
29363604 |
T |
|
| Q |
257 |
ccatttttcagtcgtccctgatcatccacaccgcaatacaattaaggtt |
305 |
Q |
| |
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||| ||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29363603 |
ccacctttaagtcgtccctgatcatccacaccgtaatacaattaaggtt |
29363555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 27005374 - 27005728
Alignment:
| Q |
9 |
gagaagcagagactagacaattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagac |
108 |
Q |
| |
|
||||| || ||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27005374 |
gagaatcaaagattagacaataaagcatccatgaatttggaaaaattcatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagaa |
27005473 |
T |
|
| Q |
109 |
taatatcctgttannnnnnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttc |
208 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||||| ||| |
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| T |
27005474 |
taatatcctgctatttctttcaacacaacaaccatacaacttaaccaaattttaatgctctacttcagagatcacactaatctccgtcaagaactctttc |
27005573 |
T |
|
| Q |
209 |
accccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctgatcatccacaccgcaatacaattaagg-ttcg |
307 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
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| T |
27005574 |
gccccttgtcttgattcagctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctaatcatccacaccgtaatacaattaaggtttca |
27005673 |
T |
|
| Q |
308 |
taatcatcgataataaaagcaacgaaaaaacaacgataagatagtagtctagatt |
362 |
Q |
| |
|
|| | | |||||| ||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
27005674 |
tactaaacgataagaaaaggaacgaaaaaacaacgatcaagtagtagtctagatt |
27005728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 32570362 - 32570552
Alignment:
| Q |
32 |
agcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaa |
131 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
32570362 |
agcatccatgaatttgaaaaaattcatttacctagaagagtttgttaaaggctattattctcaaggtaattgtagactaatatcctgctatttctttcaa |
32570461 |
T |
|
| Q |
132 |
cacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttga |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||||||| |||| |
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|
| T |
32570462 |
cacaacaaccatacaacttaaccaaattttcatgctctacttcagagatcacattaatctctgtcaagaactctttcaccccttgtcttga |
32570552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 21528097 - 21527911
Alignment:
| Q |
57 |
atttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaa |
156 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| | | ||||| |||||||| | ||||||| |
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| T |
21528097 |
atttacctagaagggtttgtgaaaggctattgttctcgaggtaattgtagactaatattctgtgatctccttcgacacagcaaccatagagtataaccaa |
21527998 |
T |
|
| Q |
157 |
attttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttat |
243 |
Q |
| |
|
|||||| |||| || ||| || || || |||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||||| |
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| T |
21527997 |
attttcatgctttatttccgaaatcacattaatctcagtcaagaattccttcaccccctgttttgattcagtcgaaaggacttttat |
21527911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 22590184 - 22590129
Alignment:
| Q |
191 |
tctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagc |
246 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
22590184 |
tctgtcaagaactcttggaccccttgttttgattcagctgataaaacttttatagc |
22590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 35535869 - 35535515
Alignment:
| Q |
9 |
gagaagcagagactagacaattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagac |
108 |
Q |
| |
|
||||| || ||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35535869 |
gagaatcaaagattagacaataaagcatccatgaatttggaaaaattcatttacctagaagagtttgtgaaaggctattattctcaaggtagttgtagat |
35535770 |
T |
|
| Q |
109 |
taatatcctgttannnnnnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttc |
208 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||||| ||| |
|
|
| T |
35535769 |
taatatcctgctatttctttcaacacaacaaccatacaacttaaccaaattttaatgctctacttcagagatcacactaatctccgtcaagaactctttc |
35535670 |
T |
|
| Q |
209 |
accccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctgatcatccacaccgcaatacaattaagg-ttcg |
307 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
35535669 |
gccccttgtcttgattcagctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctaatcatccacaccgtaatacaattaaggtttca |
35535570 |
T |
|
| Q |
308 |
taatcatcgataataaaagcaacgaaaaaacaacgataagatagtagtctagatt |
362 |
Q |
| |
|
|| | | |||||| ||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
35535569 |
tactaaacgataagaaaaggaacgaaaaaacaacgatcaggtagtagtctagatt |
35535515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 1615875 - 1616065
Alignment:
| Q |
32 |
agcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaa |
131 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
1615875 |
agcatccatgaatttgaaaaaattcatttacctagaagagtttgttaaaggctattattctcaaggtaattgtagactaatatcctgctatttctttcaa |
1615974 |
T |
|
| Q |
132 |
cacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttga |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||| |||||||||||| |||| |
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|
| T |
1615975 |
cacaacaaccatacaacttaaccaaattttcatgctctacttaagagatcacattaatctctgtcaagaactctttcaccccttgtcttga |
1616065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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