View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9279_low_28 (Length: 345)
Name: NF9279_low_28
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 43173460 - 43173150
Alignment:
| Q |
19 |
aaagttgattgcaacta-----ctattgataagcgtgattaacaagtattttctttcaaagttgataaaaatt---gaaggttgaaagaaaacctgggaa |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
43173460 |
aaagttgattgcaactactatactattgataagcgtgattaagaagtattttctttcaaagttgataaaaattgaagaaggttgaatgaaaacctgggaa |
43173361 |
T |
|
| Q |
111 |
t---tccttgggtaaggtcaagctgagcatcgtttggaccaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccgg |
207 |
Q |
| |
|
| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43173360 |
ttcctcctttgctaaggtcaagttgagcatcgtttggaccaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccgg |
43173261 |
T |
|
| Q |
208 |
agttgcttcgattactttcaacttcaccaccttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctg |
307 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43173260 |
agttgcttcgattgccttcaccttcaccaccttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctg |
43173161 |
T |
|
| Q |
308 |
ccacgtacgta |
318 |
Q |
| |
|
||||||||||| |
|
|
| T |
43173160 |
ccacgtacgta |
43173150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 34 - 331
Target Start/End: Complemental strand, 43173440 - 43173141
Alignment:
| Q |
34 |
tactattgataagcgtgattaacaagtattttctttcaaagttgataaaaattgaag---gttgaaagaaaacctgggaattcct---tgggtaaggtca |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | | |||||||| |
|
|
| T |
43173440 |
tactattgataagcgtgattaagaagtattttctttcaaagttgataaaaattgaagaaggttgaatgaaaacctgggaattcctcctttgctaaggtca |
43173341 |
T |
|
| Q |
128 |
agctgagcatcgtttggaccaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccggagttgcttcgattactttca |
227 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
43173340 |
agttgagcatcgtttggaccaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttgaacgtcgccggagttgcttcgattgccttca |
43173241 |
T |
|
| Q |
228 |
acttcaccaccttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgtacgtatatca |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43173240 |
ccttcaccaccttcacactctccattcccgatcagattacgtacgtggtggagcttcaacaaaacaaaaatctctttctgccacgtacgta----tatca |
43173145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 43176140 - 43175985
Alignment:
| Q |
98 |
gaaaacctgggaattccttgggtaaggtcaagctgagcatcgtttggaccaaacccctcaccgtccgatgaagcctcaatgacctgaccgtagtctttga |
197 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||| | |||||||| ||| | | |||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
43176140 |
gaaaacctgggaattccttgggcgagatcaagttgagcatcatggggaccaaaacccacgctgtccagtgaagcctcgatgacctgaccatagtctttga |
43176041 |
T |
|
| Q |
198 |
acgtcgccggagttgcttcgattactttcaacttcaccaccttcacactctccatt |
253 |
Q |
| |
|
| ||||||||||||||||||| | || | ||||||||||||| ||||||||| |
|
|
| T |
43176040 |
agttcgccggagttgcttcgatcgccttaattgtcaccaccttcacgctctccatt |
43175985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University