View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_3 (Length: 701)
Name: NF9279_low_3
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Complemental strand, 51190960 - 51190421
Alignment:
| Q |
8 |
gagaagcagagaacatggcagagttaccaaaaggtgttactccaagtaaaggtgttgtaataatagtactttccataatgtttttcctaacttttatctt |
107 |
Q |
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| T |
51190960 |
gagaaacacagaacatggcagagttaccaaaaggtgttactccaagtaaaggtgttgtaataatagtactttccataatgtttttcctaacttttatctt |
51190861 |
T |
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| Q |
108 |
acttgtatatgtcaaattctgtcgtgttactcctattcatcttctaaacccaaactctcttaatcttcaaaacaatctaggacaaactcgatcgaggtct |
207 |
Q |
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| T |
51190860 |
acttgtatatgtcaaattctgtcgtgttactcctattcatcttctaaacccaaactctcttaatcttcaaaacaatctaggacaaactcgatcgaggtct |
51190761 |
T |
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| Q |
208 |
ataaattctggcgttgaacaaaaagtaattgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtt |
307 |
Q |
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| T |
51190760 |
ataaattctggcgttgaacaaaaagtaattgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtt |
51190661 |
T |
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| Q |
308 |
tatcgaaatttgaagacgaggagattctgagattgttgccgaaatgcaagcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctac |
407 |
Q |
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| T |
51190660 |
tatcgaaatttgaagacgaggagattctgagattgttgccgaaatgcaagcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctac |
51190561 |
T |
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| Q |
408 |
ttgtcctctttgcaggtatatggttgaagaaagtgacatcagaaacttcaccttttcattcagctcaagattcttaagagtcccttcaaatttaagtgaa |
507 |
Q |
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| T |
51190560 |
ttgtcctctttgcaggtatatggttgaagaaagtgacatcagaaacttcaccttttcattcagctcaagattcttaagagtcccttcaaatttaagtgaa |
51190461 |
T |
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| Q |
508 |
gatccaaatcttgaaatctttattcagagacaaccatcac |
547 |
Q |
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| T |
51190460 |
gatccaaatcttgaaatctttattcagagacaaccatcac |
51190421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 577 - 682
Target Start/End: Complemental strand, 51190385 - 51190280
Alignment:
| Q |
577 |
catgaacttgttcttcttgatcatgaagaaggtggaagcagcaatgttacaaagtggaagcaagaacaacctttgcatatgattaatcataaaatattga |
676 |
Q |
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| T |
51190385 |
catgaacttgttcttcttgatcatgaagaaggtggaagcagcaatgttacaaagtggaagcaagaacaaactttgcatatgattaatcataaaatattga |
51190286 |
T |
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| Q |
677 |
tctctg |
682 |
Q |
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|||||| |
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| T |
51190285 |
tctctg |
51190280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 235 - 422
Target Start/End: Original strand, 33512353 - 33512540
Alignment:
| Q |
235 |
attgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtttatcgaaatttgaagacgaggagattc |
334 |
Q |
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| T |
33512353 |
attgaatcacttccttttttcaaattctcttctctcaaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattt |
33512452 |
T |
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| Q |
335 |
tgagattgttgccgaaatgcaagcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctacttgtcctctttgcag |
422 |
Q |
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| T |
33512453 |
taagattgttaccaaaatgtaaacatgcttttcatattgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcag |
33512540 |
T |
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