View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_35 (Length: 286)
Name: NF9279_low_35
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 77 - 268
Target Start/End: Original strand, 6483301 - 6483492
Alignment:
| Q |
77 |
tggaaggattttgataagatggcatttgagaacattttcgcataaagaatataactaccttttggttaaatatcattttgacagtgaaatctgaagattc |
176 |
Q |
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| T |
6483301 |
tggaaggcttttgataatacggtatttgagaacattttctcatacagattctaattaccttttggttaaatgtccttttgacactaaaatctgaagattc |
6483400 |
T |
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| Q |
177 |
aagattcaagatttgtatggtactacatactatacattcataaacagagtttttaccattattctcttgggaagaaggaactatataatgat |
268 |
Q |
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| T |
6483401 |
atgattcaagatttgtatggtactacttactatacattcataaacacaatttttaccattattctctcaaggagaaggaactatataatgat |
6483492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 6801353 - 6801446
Alignment:
| Q |
177 |
aagattcaagatttgtatggtactacatactatacattcataaacagagtttttaccattattctcttgggaagaaggaactatataatgatat |
270 |
Q |
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| T |
6801353 |
aagattcaagatttgtatggtactacttactatacattcataaacaaagtttttaccattattctcttgggaagaaggaactatataatgatat |
6801446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 6800966 - 6801041
Alignment:
| Q |
77 |
tggaaggattttgataagatggcatttgagaacattttcgcataaagaatataactaccttttggttaaatatcat |
152 |
Q |
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| T |
6800966 |
tggaaggcttttgataatatggcatttgagaacattttcccaaacagattctaattaccttttggttaaatatcat |
6801041 |
T |
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