View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_39 (Length: 254)
Name: NF9279_low_39
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_39 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 49931457 - 49931269
Alignment:
| Q |
66 |
attcaccacactctaacaaactaacaaaggttgtgtcaaacnnnnnnnctaacaagtgactcatcataatgagatatatctacatacttctaagttccta |
165 |
Q |
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| T |
49931457 |
attcaccacactctaacaaactaacaaatgttgcgtcgaacaaaaaaactaacaagtgactcatcataatgagatatatctacatacttctaagttctta |
49931358 |
T |
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| Q |
166 |
agtcacttggacgtaagttttatttttcttgggctcatgttgggtcatgacatgtatacaattgaaattaaaaattgatatttcactac |
254 |
Q |
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| T |
49931357 |
agtcccttggacgtaagttttatttttcttgggctcatgttgggtcatgacatgtatacaattgaaattaaaaattgatatttcactac |
49931269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 49931775 - 49931730
Alignment:
| Q |
16 |
agagaatctactatgcctaaactgctataaaaagtaaagagtagtg |
61 |
Q |
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| T |
49931775 |
agagaatctactatgcctaaactgttataaaaagtaaaaagtagtg |
49931730 |
T |
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