View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_41 (Length: 228)
Name: NF9279_low_41
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 49931036 - 49931257
Alignment:
| Q |
7 |
catggagcagaagataaggtgacagatccattggtgagccagtttctttacgagaaagcatctagcaaagacaagacactaaagatctatgaaggcggtt |
106 |
Q |
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| T |
49931036 |
catggagcagaagataaggtgacagatccattggtgagccagtttctttacgagaaagcatctagcaaagacaagacactaaagatctatgaaggaggtt |
49931135 |
T |
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| Q |
107 |
accatggcattttggaaggtgaacctgatgaaagaatttcttctgtccataatgacatcatctcatggctagacaataggtgctcaagataattgaggtt |
206 |
Q |
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| T |
49931136 |
accatggcattttggaaggtgaacctgatgaaagaatttcttctgtccataatgacatcatctcatggctagacaataggtgctcaagataattgaggtt |
49931235 |
T |
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| Q |
207 |
gatagaatatatttcattctga |
228 |
Q |
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| T |
49931236 |
gatagaatatatttcattctga |
49931257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 49935655 - 49935849
Alignment:
| Q |
7 |
catggagcagaagataaggtgacagatccattggtgagccagtttctttacgagaaagcatctagcaaagacaagacactaaagatctatgaaggcggtt |
106 |
Q |
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|||||||||||| ||||| ||||| || ||||||| ||||| ||||| || ||||||| || |||||||| |||||| | |||||||||||||| |||| |
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| T |
49935655 |
catggagcagaatataagatgacaaattcattggtaagccaatttctgtatgagaaagtgtcgagcaaagataagacattgaagatctatgaaggaggtt |
49935754 |
T |
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| Q |
107 |
accatggcattttggaaggtgaacctgatgaaagaatttcttctgtccataatgacatcatctcatggctagacaataggtgctcaagataattg |
201 |
Q |
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| T |
49935755 |
accctggcattttggaaggtgaacctgaggaaagaatttgttctgtccataatgacatcatcttatggctagatactaggtactcaagataattg |
49935849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 23290226 - 23290362
Alignment:
| Q |
7 |
catggagcagaagataaggtgacagatccattggtgagccagtttctttacgagaaagcatctagcaaagacaagacactaaagatctatgaaggcggtt |
106 |
Q |
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|||||||||| ||| ||||||||||||||||| |||||| | ||||| || || || ||||||||||| || ||||| ||||| |||||||| |||| |
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| T |
23290226 |
catggagcagcagacaaggtgacagatccattagtgagcaaatttctgtatgaaaatgcatctagcaaggataagactttaaagctctatgaaaatggtt |
23290325 |
T |
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| Q |
107 |
accatggcattttggaaggtgaacctgatgaaagaat |
143 |
Q |
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|||| ||||||||||||| || |||||||| ||||| |
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| T |
23290326 |
accactgcattttggaaggggagcctgatgatagaat |
23290362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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