View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_7 (Length: 556)
Name: NF9279_low_7
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 124 - 310
Target Start/End: Original strand, 20227107 - 20227282
Alignment:
| Q |
124 |
cattatagttttcttatgacttcttcggtttccattggattagctgggttgacgaactcaaaaactcacttctacacaagaccccaaccaa-ccaatgga |
222 |
Q |
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| T |
20227107 |
cattatagttttgttatgacttattcggtttccattggattagctgggttgacgaactcaaaaactcacttctacacaagaccccaaccaaaccaatgga |
20227206 |
T |
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| Q |
223 |
atccactccacattcaaccaatcaaataaacagagaaaccaaccagagtagcagactccaacaatgccataaaatcaaacactacaaa |
310 |
Q |
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| T |
20227207 |
atccactccacatttaaccaatcaaataaa-----------actat-gtagcagactccaacaatgccataaaatcaaatactacaaa |
20227282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 20226872 - 20226985
Alignment:
| Q |
1 |
tgtcttacgaccatattgtacttggattattgatgaagaaatttctcagtatttaaagatgtaatcagcactacaaactgtaagttgaagataatattat |
100 |
Q |
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| T |
20226872 |
tgtcttacgaccatgttgtacttggattattgatgaagaaatttctcagtatttaaagatgtaataagcactacaaactgtaagttgaagataatattat |
20226971 |
T |
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| Q |
101 |
tgtcaaaaaacaaa |
114 |
Q |
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| T |
20226972 |
tgtcaaaaaacaaa |
20226985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 12170631 - 12170591
Alignment:
| Q |
401 |
attcaatcacttgtattctcttaaattatttttggtgtcta |
441 |
Q |
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| T |
12170631 |
attcaatcacttttattttcttaaattattattggtgtcta |
12170591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 12415059 - 12415019
Alignment:
| Q |
401 |
attcaatcacttgtattctcttaaattatttttggtgtcta |
441 |
Q |
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|||||||||||| |||| |||||||||||| |||||||||| |
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| T |
12415059 |
attcaatcacttttattttcttaaattattattggtgtcta |
12415019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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