View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9279_low_9 (Length: 528)
Name: NF9279_low_9
Description: NF9279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9279_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 30239413 - 30239923
Alignment:
| Q |
1 |
agtgatggatggtgcttggagttgggaccatagacaaaattggtctttcctactttagtgctaattgttaatgacaaaggaattggacactgacatagca |
100 |
Q |
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| T |
30239413 |
agtgatggatggtgcttggagttgggaccatagacaaaaatggtctttcctactttagtgctaattgttaatgacaaaggaattggacactgacatagca |
30239512 |
T |
|
| Q |
101 |
ctatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcggt |
200 |
Q |
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| T |
30239513 |
ctatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcggt |
30239612 |
T |
|
| Q |
201 |
gtcatgaaaagatnnnnnnntaatctgaccgatgaaaatgtttcattttgtttggacttggttnnnnnnntggtcagaatcagagcacttccatgagcac |
300 |
Q |
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| T |
30239613 |
gtcatgaaaagataaaaaaataatctgaccgatgaaaatgtttcattttgtttggacttggttaaaaaaatggtcagaatcagagcacttccatgagcac |
30239712 |
T |
|
| Q |
301 |
taaaaatcccacaatatggaccatttgagcagaatattaaatgcagtgtagaaataaatggagcttgtgaagagaatgaaccagaagagtagttattatt |
400 |
Q |
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| T |
30239713 |
taaaaatcccacaatatggaccatttgagcagaatattaaatgcaatgtagaaataaatggagcctgtgaagagaatgaaccagaagagtagttattatt |
30239812 |
T |
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| Q |
401 |
caaatattggagccaataggtatgagtttgtgacattttggtgt--ggatggatggaaccttgtggtccaaaccccattcacccaattcgcagtggatta |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30239813 |
caaatattggagccaataggtatgagtttgtgacattttggttttggtgtggatggaaccttgtggtccaaaccccattcacccaattcgcagtggatta |
30239912 |
T |
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| Q |
499 |
caggtagggtg |
509 |
Q |
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| T |
30239913 |
caggtagggtg |
30239923 |
T |
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