View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9280_high_2 (Length: 318)
Name: NF9280_high_2
Description: NF9280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9280_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 11156188 - 11155887
Alignment:
| Q |
17 |
acatttgatccagttaaaaattggaggctgccagaggacctctataatcttaggagcttttggaggatgatttgagacattgaaagcctttaaaatnnnn |
116 |
Q |
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| T |
11156188 |
acatttgatccagttaaaaattggaggctgccagaggacctctataatcttaggagctttttgcggatgatttgagacattgaaagcctttaaaataaaa |
11156089 |
T |
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| Q |
117 |
nnntctgacatggaagggctagtggttgacagagaagtacagttgccggacaaagatacatttgcaataacgaaggtcactgccgaattcttggaaatct |
216 |
Q |
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| T |
11156088 |
aaatatgacatggaacggccagtggttgacagagaagtacagttgccagacaaagatacatttgcaataacgaaggtcactgtcgaattcttggaaatct |
11155989 |
T |
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| Q |
217 |
gtttgttattgaatctttggttatttctgcaaaaccaaattacattgacaatgttgacaatcgttgatcaaataaccactttgcattgaggactgaactg |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
11155988 |
gtttgttattgaatcttttgttatttctgcaaaaccaaattacattgacaatgttgacaattgctgatcaaataaccactttgcattgaggactgaactg |
11155889 |
T |
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| Q |
317 |
tt |
318 |
Q |
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| T |
11155888 |
tt |
11155887 |
T |
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