View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9280_low_1 (Length: 791)

Name: NF9280_low_1
Description: NF9280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9280_low_1
NF9280_low_1
[»] chr7 (34 HSPs)
chr7 (3-776)||(20922999-20923771)
chr7 (279-362)||(14942965-14943048)
chr7 (279-362)||(15370558-15370641)
chr7 (119-271)||(17881303-17881456)
chr7 (368-446)||(10309987-10310065)
chr7 (279-363)||(17881175-17881259)
chr7 (368-446)||(12331027-12331104)
chr7 (120-267)||(12330711-12330859)
chr7 (368-454)||(14961235-14961320)
chr7 (368-454)||(15390707-15390792)
chr7 (368-454)||(17132610-17132695)
chr7 (133-265)||(9560668-9560801)
chr7 (119-274)||(17115128-17115281)
chr7 (368-446)||(14943081-14943159)
chr7 (368-446)||(15370674-15370752)
chr7 (119-188)||(7965589-7965658)
chr7 (281-362)||(10310103-10310184)
chr7 (150-274)||(14960946-14961072)
chr7 (150-274)||(15390418-15390544)
chr7 (368-439)||(11064223-11064294)
chr7 (399-454)||(9560416-9560470)
chr7 (178-269)||(10310233-10310323)
chr7 (376-442)||(15125213-15125278)
chr7 (149-274)||(17132313-17132438)
chr7 (368-442)||(17140218-17140291)
chr7 (131-265)||(18098498-18098634)
chr7 (397-446)||(17881060-17881109)
chr7 (119-191)||(21668548-21668620)
chr7 (149-278)||(15124918-15125049)
chr7 (368-452)||(7404459-7404540)
chr7 (415-446)||(17114964-17114995)
chr7 (324-363)||(17115021-17115060)
chr7 (375-454)||(18098357-18098435)
chr7 (149-191)||(7404794-7404836)
[»] chr2 (32 HSPs)
chr2 (119-274)||(25576435-25576589)
chr2 (123-278)||(23780422-23780576)
chr2 (124-269)||(28144236-28144379)
chr2 (119-269)||(27861208-27861357)
chr2 (130-268)||(13821702-13821843)
chr2 (279-363)||(27190122-27190206)
chr2 (279-363)||(27839936-27840020)
chr2 (119-274)||(22801346-22801500)
chr2 (280-363)||(23780611-23780694)
chr2 (119-274)||(27597978-27598136)
chr2 (128-274)||(28141498-28141642)
chr2 (374-454)||(27189999-27190079)
chr2 (374-454)||(27839813-27839893)
chr2 (368-454)||(13822010-13822095)
chr2 (120-278)||(27190243-27190402)
chr2 (120-278)||(27840057-27840216)
chr2 (368-446)||(22802970-22803047)
chr2 (368-454)||(27597730-27597815)
chr2 (149-278)||(11323495-11323624)
chr2 (368-446)||(23780731-23780809)
chr2 (279-363)||(25576630-25576713)
chr2 (279-362)||(22801540-22801623)
chr2 (371-440)||(25597587-25597656)
chr2 (368-442)||(11323783-11323856)
chr2 (120-275)||(20478494-20478652)
chr2 (368-446)||(25576750-25576827)
chr2 (149-269)||(25568699-25568819)
chr2 (281-330)||(25597487-25597536)
chr2 (399-446)||(28140106-28140153)
chr2 (368-446)||(20478255-20478331)
chr2 (394-446)||(31404046-31404098)
chr2 (201-266)||(25597372-25597436)
[»] chr4 (15 HSPs)
chr4 (119-269)||(12810192-12810342)
chr4 (119-274)||(14632954-14633108)
chr4 (120-269)||(11889695-11889843)
chr4 (373-446)||(18558372-18558445)
chr4 (279-363)||(12810062-12810146)
chr4 (279-363)||(14632829-14632913)
chr4 (120-234)||(10070337-10070451)
chr4 (279-363)||(10070509-10070593)
chr4 (279-363)||(11889564-11889648)
chr4 (375-446)||(14632714-14632785)
chr4 (368-446)||(12809947-12810025)
chr4 (368-446)||(11888160-11888238)
chr4 (368-446)||(10070630-10070708)
chr4 (281-363)||(18558488-18558570)
chr4 (393-446)||(4697559-4697612)
[»] chr8 (33 HSPs)
chr8 (119-278)||(23242059-23242217)
chr8 (279-363)||(12149381-12149464)
chr8 (144-274)||(21301543-21301672)
chr8 (279-363)||(24093305-24093389)
chr8 (368-454)||(17983426-17983511)
chr8 (279-363)||(17983304-17983389)
chr8 (132-278)||(9006691-9006838)
chr8 (131-278)||(17983120-17983266)
chr8 (120-278)||(24093426-24093582)
chr8 (373-446)||(9007000-9007072)
chr8 (129-278)||(23817915-23818067)
chr8 (279-359)||(21285111-21285191)
chr8 (279-363)||(21301952-21302036)
chr8 (151-269)||(15927688-15927809)
chr8 (279-362)||(23242242-23242326)
chr8 (368-446)||(15927453-15927530)
chr8 (384-446)||(24093190-24093252)
chr8 (397-454)||(12149261-12149318)
chr8 (173-274)||(12149505-12149605)
chr8 (129-278)||(921363-921514)
chr8 (400-446)||(21302105-21302151)
chr8 (149-274)||(22814918-22815043)
chr8 (368-454)||(24477758-24477843)
chr8 (149-278)||(22263766-22263897)
chr8 (279-363)||(9006874-9006958)
chr8 (368-448)||(23818224-23818305)
chr8 (394-446)||(13110299-13110351)
chr8 (405-448)||(27123594-27123637)
chr8 (368-446)||(921122-921199)
chr8 (394-448)||(16600659-16600713)
chr8 (396-446)||(9286340-9286390)
chr8 (149-191)||(24478090-24478132)
chr8 (388-421)||(22739073-22739106)
[»] chr3 (16 HSPs)
chr3 (120-269)||(16226901-16227049)
chr3 (122-278)||(13908471-13908626)
chr3 (279-362)||(16224173-16224256)
chr3 (119-278)||(22928246-22928403)
chr3 (120-278)||(16224293-16224449)
chr3 (368-446)||(13409899-13409976)
chr3 (368-446)||(22928561-22928639)
chr3 (279-363)||(22928440-22928524)
chr3 (368-446)||(16226657-16226735)
chr3 (279-363)||(16226772-16226855)
chr3 (368-422)||(16224080-16224134)
chr3 (288-363)||(13908672-13908744)
chr3 (389-446)||(15759673-15759729)
chr3 (373-425)||(13908786-13908838)
chr3 (226-269)||(16925325-16925368)
chr3 (383-454)||(16925549-16925619)
[»] chr6 (35 HSPs)
chr6 (119-278)||(20194547-20194706)
chr6 (119-278)||(22088570-22088729)
chr6 (122-269)||(17863472-17863618)
chr6 (120-278)||(12410300-12410458)
chr6 (279-363)||(7391197-7391281)
chr6 (119-269)||(21375827-21375978)
chr6 (279-363)||(18560358-18560441)
chr6 (373-446)||(7391082-7391155)
chr6 (279-363)||(12410495-12410579)
chr6 (374-446)||(25945918-25945989)
chr6 (368-454)||(11306714-11306799)
chr6 (368-446)||(25915456-25915534)
chr6 (279-363)||(20194742-20194826)
chr6 (279-363)||(22088765-22088849)
chr6 (368-454)||(11988503-11988588)
chr6 (120-274)||(31137525-31137685)
chr6 (279-362)||(21376023-21376106)
chr6 (149-269)||(23010694-23010815)
chr6 (120-278)||(7391318-7391465)
chr6 (279-363)||(25945790-25945874)
chr6 (368-454)||(12418363-12418448)
chr6 (368-454)||(12421198-12421283)
chr6 (368-446)||(17863248-17863326)
chr6 (130-267)||(25945605-25945743)
chr6 (149-278)||(34501005-34501133)
chr6 (151-278)||(18560477-18560605)
chr6 (149-257)||(20191900-20192007)
chr6 (149-257)||(22143984-22144091)
chr6 (226-273)||(20228786-20228833)
chr6 (226-273)||(22122770-22122817)
chr6 (368-438)||(23590739-23590808)
chr6 (414-446)||(16142653-16142685)
chr6 (388-440)||(23010449-23010500)
chr6 (368-446)||(20194863-20194941)
chr6 (368-446)||(22088886-22088964)
[»] scaffold0009 (6 HSPs)
scaffold0009 (119-278)||(222396-222554)
scaffold0009 (368-455)||(50446-50533)
scaffold0009 (119-274)||(50127-50284)
scaffold0009 (279-361)||(50325-50407)
scaffold0009 (279-363)||(222590-222675)
scaffold0009 (375-446)||(222719-222789)
[»] scaffold0005 (3 HSPs)
scaffold0005 (119-274)||(184184-184338)
scaffold0005 (279-363)||(184379-184463)
scaffold0005 (375-446)||(184507-184578)
[»] chr5 (28 HSPs)
chr5 (120-274)||(22010842-22010995)
chr5 (119-278)||(36196872-36197029)
chr5 (123-274)||(25769499-25769649)
chr5 (373-455)||(22703564-22703646)
chr5 (120-272)||(22969659-22969807)
chr5 (279-363)||(22969531-22969615)
chr5 (130-274)||(24924231-24924379)
chr5 (373-446)||(22011148-22011221)
chr5 (368-445)||(22806338-22806415)
chr5 (375-448)||(36196651-36196724)
chr5 (375-446)||(25769799-25769870)
chr5 (377-454)||(24923985-24924061)
chr5 (394-446)||(22969416-22969468)
chr5 (368-454)||(17987547-17987632)
chr5 (377-445)||(23779078-23779145)
chr5 (377-445)||(23866031-23866098)
chr5 (312-363)||(17810801-17810852)
chr5 (368-454)||(16075632-16075717)
chr5 (145-265)||(16470306-16470428)
chr5 (224-278)||(20547204-20547258)
chr5 (317-363)||(25769709-25769755)
chr5 (317-363)||(36196768-36196814)
chr5 (120-188)||(17810994-17811062)
chr5 (307-363)||(22011050-22011106)
chr5 (149-191)||(16075336-16075378)
chr5 (149-187)||(23779411-23779449)
chr5 (149-187)||(23866364-23866402)
chr5 (397-446)||(24878465-24878514)
[»] chr1 (22 HSPs)
chr1 (130-274)||(25401498-25401645)
chr1 (368-446)||(22533687-22533765)
chr1 (376-454)||(25401803-25401880)
chr1 (140-269)||(10159027-10159159)
chr1 (279-363)||(22533802-22533885)
chr1 (119-274)||(18523167-18523322)
chr1 (368-454)||(4600980-4601065)
chr1 (368-454)||(10158774-10158859)
chr1 (149-274)||(20886344-20886470)
chr1 (368-454)||(21290958-21291043)
chr1 (279-363)||(18523042-18523126)
chr1 (372-448)||(20886634-20886709)
chr1 (388-446)||(18522928-18522985)
chr1 (368-454)||(18780640-18780725)
chr1 (368-454)||(33128921-33129006)
chr1 (406-448)||(36571667-36571709)
chr1 (279-363)||(20886510-20886592)
chr1 (394-439)||(13202085-13202130)
chr1 (151-269)||(25400435-25400553)
chr1 (231-275)||(22533925-22533969)
chr1 (149-191)||(20146777-20146819)
chr1 (149-191)||(21291299-21291341)
[»] scaffold0056 (2 HSPs)
scaffold0056 (120-267)||(20703-20849)
scaffold0056 (280-363)||(20571-20654)
[»] scaffold0170 (2 HSPs)
scaffold0170 (368-454)||(1346-1431)
scaffold0170 (279-363)||(1225-1309)
[»] scaffold0004 (4 HSPs)
scaffold0004 (119-278)||(376739-376899)
scaffold0004 (394-446)||(377083-377135)
scaffold0004 (368-420)||(357789-357841)
scaffold0004 (149-213)||(370102-370165)
[»] scaffold0031 (2 HSPs)
scaffold0031 (119-274)||(38087-38246)
scaffold0031 (388-446)||(38352-38409)
[»] scaffold0338 (2 HSPs)
scaffold0338 (120-278)||(16982-17143)
scaffold0338 (368-454)||(17301-17386)
[»] scaffold0210 (6 HSPs)
scaffold0210 (119-265)||(18013-18157)
scaffold0210 (119-265)||(25905-26049)
scaffold0210 (368-440)||(18309-18381)
scaffold0210 (368-440)||(26201-26273)
scaffold0210 (317-363)||(18226-18272)
scaffold0210 (317-363)||(26118-26164)
[»] scaffold0059 (4 HSPs)
scaffold0059 (368-446)||(29338-29416)
scaffold0059 (279-363)||(29216-29301)
scaffold0059 (184-274)||(29087-29175)
scaffold0059 (120-169)||(29037-29086)
[»] scaffold0099 (1 HSPs)
scaffold0099 (377-448)||(37148-37218)
[»] scaffold0194 (1 HSPs)
scaffold0194 (149-269)||(31567-31686)
[»] scaffold0065 (1 HSPs)
scaffold0065 (395-454)||(14678-14736)
[»] scaffold0501 (1 HSPs)
scaffold0501 (375-454)||(8668-8746)
[»] scaffold0502 (1 HSPs)
scaffold0502 (368-454)||(12220-12305)
[»] scaffold0040 (1 HSPs)
scaffold0040 (389-446)||(26875-26931)
[»] scaffold0002 (1 HSPs)
scaffold0002 (394-440)||(374144-374190)


Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 3 - 776
Target Start/End: Original strand, 20922999 - 20923771
Alignment:
Q  3 ggtgggtagattatacttatcctaatacgactagggtgtatcgtgaatgactaaagatatgtcgtgtattaagtcatcagttttactaccttctgtattg 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20922999 ggtgggta-attatacttatcctaatacgactagggtgtatcgtgaatgactaaagatatgtcgtgtattaagtcatcagttttactaccttctgtattg 20923097  T
Q  103 ggtacttgttagcaagttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923098 ggtacttgttagcaagttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgt 20923197  T
Q  203 gcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagttagattgcaagtaaaagcaagacaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923198 gcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagttagattgcaagtaaaagcaagacaa 20923297  T
Q  303 aattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgcgacccattttgtataacttgttttcctagacgccggtag 402  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20923298 aattaaaggaaagagtaacagtttaaacgcataaatttaaaggaaatgtaaaatgcattgcgacccattttgtataacttgtttccctagacgccggtag 20923397  T
Q  403 tttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttgattttagtagggtagtccaagaattagcatgaccctttataggcctca 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20923398 tttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg-ttttagtaggatagtccaagaattagcatgaccctttataggcctca 20923496  T
Q  503 ttcctccttatataactcgtagaaaaactactaaaagttttgaaagttcccttgttggtttctatgttgccccaattacagttattgtttcctttcagta 602  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20923497 ttcctcctgatataactcgtagaaaaactactaaaagttttgaaagttcccttgttggtttctatgttgccccaattacagttattgtttccttttagta 20923596  T
Q  603 ttttttgaaattttgagaattggccggatcatgagatttatgttcagtttttcttgtttctttcttttagtcatt-nnnnnnncctttgtggtaactaga 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  20923597 ttttttgaaattttgagaattggccggatcatgagatttatgttcagtttttcttgtttctttcttttagtcattaaaaaaaacctttgtggtaactaga 20923696  T
Q  702 aaaggaaattagctattaaatatttggatggattataaatttagttattatgattcagatatgagtttaagtttt 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923697 aaaggaaattagctattaaatatttggatggattataaatttagttattatgattcagatatgagtttaagtttt 20923771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 14942965 - 14943048
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14942965 agattgcaattaaaagcaagacaaaattaaaggaaagggtaaaagtttaaacgcataaatttaaaggaaatgtaaaatgaattg 14943048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 15370558 - 15370641
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  15370558 agattgcaattaaaagcaagacaaaattaaaggaaagggtaaaagtttaaacgcataaatttaaaggaaatgtaaaatgaattg 15370641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 17881456 - 17881303
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaat-- 216  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||| ||      
T  17881456 ttgtttactggtgttttcggtaaactacgggctagttatgattattacaagcgagaccgaactagaaatctcaggacatgttgtgcaaaggttttgataa 17881357  T
Q  217 cgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatg 271  Q
      || | |||||| |||||||  |||| ||||| |||||||||||||||||||||    
T  17881356 aaaaaacagtttg-aaaaaggttacgaaatgcactcaggttacttagagagcatg 17881303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 10310065 - 10309987
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10310065 cattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 10309987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 17881259 - 17881175
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||| || ||||||||||||||||||||||    
T  17881259 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaagtttaaacacataaacttgaaggaaatgtaaaatgcattgc 17881175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 12331027 - 12331104
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12331027 cattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgcgacccatttt 12331104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 267
Target Start/End: Original strand, 12330711 - 12330859
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcg 218  Q
    ||||| || |||||||| |||||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||  |||  |||||||| |||| ||||    
T  12330711 tgtttgcctgtgttttcagaaaactacgggctagttctgattatcacaagcgagaccgaactagagatcttaggagcatgttgtgcaaagattttgatcg 12330810  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagag 267  Q
    || | || ||  |||| ||||| |||||||| |||||||||||||||||    
T  12330811 aaaagaggtttgaaaagggccatgagatgcactcaggttacttagagag 12330859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 14961235 - 14961320
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| |||||||    
T  14961235 cattatgtataactcgtttccctagacgccggtagtttgagtgttttagaa-ttctataaataatttgcgacccattttccggcttg 14961320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 15390707 - 15390792
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| |||||||    
T  15390707 cattatgtataactcgtttccctagacgccggtagtttgagtgttttagaa-ttctataaataatttgcgacccattttccggcttg 15390792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 17132610 - 17132695
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||| ||||||    
T  17132610 cattctgtataacttgtttccctagacgccggtagtttgagtgttgtagaattt-tgtatatgatttgcgacccactttttggcttg 17132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 265
Target Start/End: Complemental strand, 9560801 - 9560668
Alignment:
Q  133 tttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctc-aggaaatgacgtgcaaaggttttaatcgaagatagtttgaa 231  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||||||| | ||||| |||  |||  ||||||||||||| |||||| | || ||  |    
T  9560801 tttcggcaaactacaagctagttctgattatcacaagcgagaccgaactagagatctcaagggcatgttgtgcaaaggttttgatcgaaaaaaggtttga 9560702  T
Q  232 aaaaggccacgagatgcagtcaggttacttagag 265  Q
    |||||||||  ||||||| |||||||||||||||    
T  9560701 aaaaggccagcagatgcactcaggttacttagag 9560668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 17115281 - 17115128
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||| || ||||| ||||   ||  ||||||||||||| |  |    
T  17115281 ttgtttaccggtgttttcggcaaactacgggctagttctgattattacaagcggaaccgaaatagaaatcccaggtcttgttgtgcaaaggttttga-gg 17115183  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || | |||||| | |||||||| || ||||| ||||||||| ||||||||| ||||    
T  17115182 aaaacagtttg-agaaaggccatgaaatgcactcaggttacctagagagcaagacg 17115128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 14943081 - 14943159
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| |||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14943081 cattctgtataactcgtttccctagatgttggtagtttgagtgttgtagaatttctataaatgatttacgacccatttt 14943159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 15370674 - 15370752
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| |||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15370674 cattctgtataactcgtttccctagatgttggtagtttgagtgttgtagaatttctataaatgatttacgacccatttt 15370752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 7965589 - 7965658
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatc 188  Q
    ||||||||| |||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  7965589 ttgtttaccagtgttttcggcaaactacgggctagttcagattattacaaacgagaccgaactaaaaatc 7965658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 10310184 - 10310103
Alignment:
Q  281 attgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    ||||||||||||||||| | |||||||||| |||| |||| ||||||||||||| || |||||||||||||||| |||||||    
T  10310184 attgcaagtaaaagcaacataaaattaaagaaaagggtaaaagtttaaacgcatcaacttaaaggaaatgtaaattgcattg 10310103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 14960946 - 14961072
Alignment:
Q  150 ctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg---aagatagtttgaaaaaaggccacgagat 246  Q
    ||||||||||||||||||||||||| ||||||| |||||||| | |  || ||||||||||||| ||||   || | ||||||||||| |||||| ||||    
T  14960946 ctagttctgattattacaagcgagatcgaactagaaatctcaag-accgatgtgcaaaggtttttatcggaaaaaagagtttgaaaaagggccacaagat 14961044  T
Q  247 gcagtcaggttacttagagagcatgacg 274  Q
    ||| ||||||| ||||||||||| ||||    
T  14961045 gcactcaggttgcttagagagcaggacg 14961072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 15390418 - 15390544
Alignment:
Q  150 ctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg---aagatagtttgaaaaaaggccacgagat 246  Q
    ||||||||||||||||||||||||| ||||||| |||||||| | |  || ||||||||||||| ||||   || | ||||||||||| |||||| ||||    
T  15390418 ctagttctgattattacaagcgagatcgaactagaaatctcaag-accgatgtgcaaaggtttttatcggaaaaaagagtttgaaaaagggccacaagat 15390516  T
Q  247 gcagtcaggttacttagagagcatgacg 274  Q
    ||| ||||||| ||||||||||| ||||    
T  15390517 gcactcaggttgcttagagagcaggacg 15390544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 11064223 - 11064294
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgac 439  Q
    |||| ||||||||| |||| ||||  || |||||||||||||||||||||||||||||||||||||||||||    
T  11064223 cattatgtataactcgtttccctatgcgtcggtagtttgagtgttgtagaatttctataaatgatttgcgac 11064294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 9560470 - 9560416
Alignment:
Q  399 gtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  9560470 gtagtttgagtgttgtagaatt-ctataaatgatttgcgacccattttccggcttg 9560416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 10310323 - 10310233
Alignment:
Q  178 aactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    ||||| ||||||||||| |||  ||| ||||||||| |||||| || |||||||||| |||||||| ||||| |||||||||||||||||||    
T  10310323 aactagaaatctcaggacatgttgtgaaaaggttttgatcgaaaatggtttgaaaaa-ggccacgaaatgcactcaggttacttagagagca 10310233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 15125213 - 15125278
Alignment:
Q  376 ataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgaccca 442  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||| || |||||||||||||||    
T  15125213 ataacttgtttccctagacgccgttagtttgagtgttgtagaa-ttctgtatatgatttgcgaccca 15125278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 17132313 - 17132438
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaag-atagtttgaaaaaaggccacgagatg 247  Q
    ||||||| ||||||||||||||| || | ||||| |||||||| ||   |  ||||||||||||| ||||||  | |||||||||||| ||||||| |||    
T  17132313 gctagttttgattattacaagcgcgaactaactagaaatctcaagacc-gttgtgcaaaggtttttatcgaaacagagtttgaaaaaatgccacgaaatg 17132411  T
Q  248 cagtcaggttacttagagagcatgacg 274  Q
    || ||||||| ||||||||||||||||    
T  17132412 cactcaggttgcttagagagcatgacg 17132438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 17140218 - 17140291
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgaccca 442  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||||||||| | || ||||||||| |||||    
T  17140218 cattttttataactcgtttccctagacgccggtagtttgagtgttgtagaattt-tgtatatgatttgcaaccca 17140291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 18098634 - 18098498
Alignment:
Q  131 gttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcgaagata-gttt 228  Q
    ||||| || |||||||| | ||||| ||||||||||||||||||| |||||| | |||||||||  |||  ||||| ||||||| |||||| | | ||||    
T  18098634 gtttttggcaaactacgggttagttatgattattacaagcgagactgaactagagatctcaggagcatgttgtgcataggttttgatcgaaaaaaggttt 18098535  T
Q  229 gaaaaaaggccacgagatgcagtcaggttacttagag 265  Q
      |||| |||||| ||||||| |||||||||||||||    
T  18098534 tgaaaatggccacaagatgcactcaggttacttagag 18098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 17881109 - 17881060
Alignment:
Q  397 cggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  17881109 cggtagtttgagtgttttagagtttctataaatgatttgcgacctatttt 17881060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 21668548 - 21668620
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    |||||| || ||||||| || |||||||  |||||||||||||||||||||||||||| ||||| | ||||||    
T  21668548 ttgtttgcctgtgtttttggcaaactacatgctagttctgattattacaagcgagaccaaactagagatctca 21668620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 15124918 - 15125049
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatag---tttgaaaaaaggccacgaga 245  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||   |  |||||||||||||  |  | || |    |||||||||||||||||| |    
T  15124918 gctagttctgattattacaagcgagatcgaactagaaatctcaagacc-gttgtgcaaaggtttttttataggaaaaggttttgaaaaaaggccacgaaa 15125016  T
Q  246 tgcagtcaggttacttagagagcatgacgagtt 278  Q
    |||| ||||||| ||||| ||||| ||||||||    
T  15125017 tgcactcaggttgcttagtgagcaggacgagtt 15125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 7404540 - 7404459
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggct 452  Q
    |||| ||||||| | ||||||||||||  ||||||||| |||||||||||| |||| || ||||||||||||||  |||||||||    
T  7404540 cattctgtataattcgttttcctagac--cggtagtttcagtgttgtagaa-ttctgtatatgatttgcgaccctcttttcggct 7404459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 17114995 - 17114964
Alignment:
Q  415 agaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||||||||||||||||||||||||||    
T  17114995 agaatttctataaatgatttgcgacccatttt 17114964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 17115060 - 17115021
Alignment:
Q  324 tttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  17115060 tttaaacgcataaacttaaaggaaaggtaaaatgcattgc 17115021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 18098435 - 18098357
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||||| |||| ||||| | |||||||||||||||||  | |||| ||||||||||||| |||||| |||| |||||||    
T  18098435 tataactcgtttccctaggcaccggtagtttgagtgtttcaaaatt-ctataaatgattttcgaccctttttccggcttg 18098357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 7404836 - 7404794
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    ||||||||||||||||||||  |||||||||||| ||||||||    
T  7404836 gctagttctgattattacaatggagaccgaactagaaatctca 7404794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 25576435 - 25576589
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||| ||||    
T  25576435 ttgtttaccggtgttttctgcaaactacgggctaattctgattattacaagcgagaccgaactagaaatctcaggacatgctgtgcaaaggttttgatcg 25576534  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || |  ||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  25576535 aaaacggtttg-aaaaaggccacgagatgcactcaggttacttagagagcaggacg 25576589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 23780422 - 23780576
Alignment:
Q  123 ttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaaga 222  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||  ||||||||||||| |||||| |    
T  23780422 ttaccgctgttttcggcaaactacgggctagttctgattattacaagcgagaccgaactggaaatctcaggacatgttgtgcaaaggttttgatcgaaaa 23780521  T
Q  223 tagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
      ||||| ||||||||||| | ||||| |||| |||||||||||| | ||||||||    
T  23780522 cggtttg-aaaaaggccacaaaatgcactcagattacttagagagtaggacgagtt 23780576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 28144236 - 28144379
Alignment:
Q  124 taccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagat 223  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||  ||| || |||  ||||||||||||| | |||| |     
T  28144236 taccggtgttttcggcaaactacgagttagttctgattattacaagcgagaccgaaccaaaaaattcaagacatgttgtgcaaaggttttga-cgaaaac 28144334  T
Q  224 agtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    | |||| ||||||||||||| ||||| |||||||||||||||||||    
T  28144335 aatttg-aaaaaggccacgaaatgcactcaggttacttagagagca 28144379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 27861357 - 27861208
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||| | |||||||||| |||||||  |||||||||||||||| |||||| |||||||||| ||||| ||||| |||  ||||||||||||| |  |    
T  27861357 ttgtttaactgtgttttcggcaaactacaggctagttctgattattccaagcgggaccgaactagaaatcccaggacatgttgtgcaaaggttttga-gg 27861259  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    || | ||||| |||||||||||||| ||||| |||||||||||||||||||    
T  27861258 aaaacagtttaaaaaaaggccacgaaatgcactcaggttacttagagagca 27861208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 13821702 - 13821843
Alignment:
Q  130 tgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgc-aaaggttttaatcgaagata-gt 226  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||  |||  |||| ||||||||| |||||| | | ||    
T  13821702 tgttttcggaaaactacgggctagttctgattattacaagcgagaccgaactagagatctcaggagcatgttgtgcaaaaggttttgatcgaaaaaaggt 13821801  T
Q  227 ttgaaaaaaggccacgagatgcagtcaggttacttagagagc 268  Q
    ||  ||||||| ||||||||||| ||||||||||||||||||    
T  13821802 tttgaaaaaggtcacgagatgcactcaggttacttagagagc 13821843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 27190206 - 27190122
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||||||||||||||||    
T  27190206 agattgcaagtaaaagcaagacaaaattaaaggaaagggtaaaagtttaaatgcataaacttaaatgaaatgtaaaatgcattgc 27190122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 27840020 - 27839936
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||||||||||||||||    
T  27840020 agattgcaagtaaaagcaagacaaaattaaaggaaagggtaaaagtttaaatgcataaacttaaatgaaatgtaaaatgcattgc 27839936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 22801346 - 22801500
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||| || |||||| |||| ||   ||||||||||||| | ||    
T  22801346 ttgtttacctgtgttttcggcaaactacgggctagttctgattattacaagtgagaccgaattagaaatcttaggacatattgtgcaaaggttttgaccg 22801445  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || |  ||||| ||||| ||||| ||||||| ||||||||| ||||||||| ||||    
T  22801446 aaaacggtttg-aaaaatgccacaagatgcactcaggttacatagagagcaggacg 22801500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 23780611 - 23780694
Alignment:
Q  280 gattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  23780611 gattgcaagtaaaagcaagataaaattaacggaaagggtaaaagtttaaacgcataaacttaaaggaaatgtaaaatgcattgc 23780694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 27598136 - 27597978
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatc 217  Q
    |||||| || ||||||| || |||||||  ||||||||||||||||||||| |||||||||||| | |||||||||  |||  ||||||||||||| |||    
T  27598136 ttgtttgcctgtgtttttggcaaactacaggctagttctgattattacaagtgagaccgaactagagatctcaggagcatgttgtgcaaaggttttgatc 27598037  T
Q  218 gaagata-gtttgaaaaaag-gccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    ||| | | |||| ||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  27598036 gaaaaaaggttttaaaaaagagccacgagatgcactcaggttacttagagagcaggacg 27597978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 28141642 - 28141498
Alignment:
Q  128 ggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtt 227  Q
    ||||||||||| |||||||||| ||||||||||||||||||| | || ||||| |||||| |||||| |||  ||||||||||||| | |||| | ||||    
T  28141642 ggtgttttcggcaaactacgagttagttctgattattacaagtgggatcgaaccaaaaatttcaggacatgttgtgcaaaggttttga-cgaaaacagtt 28141544  T
Q  228 tgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || ||||||||||| | ||||| ||||||||||||||||||| ||||    
T  28141543 tg-aaaaaggccacaaaatgcactcaggttacttagagagcaagacg 28141498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 27190079 - 27189999
Alignment:
Q  374 gtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  27190079 gtataactcgtttccctagacgtcggtagtttgagtgttgtagaatttttataaatgatttgcgacccatttttcgacttg 27189999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 27839893 - 27839813
Alignment:
Q  374 gtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  27839893 gtataactcgtttccctagacgtcggtagtttgagtgttgtagaatttttataaatgatttgcgacccatttttcgacttg 27839813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 13822010 - 13822095
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  13822010 cattttgtataactcgtttccctagacgtcggtagtttgagtgttgtagaa-ttctataaatgatttgcgatccattttccggcttg 13822095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 27190402 - 27190243
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    ||||||| ||||||||||| |||||| | |||||||| |||||| ||  |||||| ||||||| |||||| |||| |||  ||||||| ||||| ||  |    
T  27190402 tgtttactggtgttttcggcaaactatgggctagttcagattataacgtgcgagatcgaactagaaatcttaggatatgttgtgcaaatgttttgataaa 27190303  T
Q  220 agatagtttgaaaaaa-ggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | || |||| |||||| |||||||||||||| ||||||||| ||||||||| ||||||||    
T  27190302 aaatggtttaaaaaaagggccacgagatgcactcaggttacatagagagcaggacgagtt 27190243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 27840216 - 27840057
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    ||||||| ||||||||||| |||||| | |||||||| |||||| ||  |||||| ||||||| |||||| |||| |||  ||||||| ||||| ||  |    
T  27840216 tgtttactggtgttttcggcaaactatgggctagttcagattataacgtgcgagatcgaactagaaatcttaggatatgttgtgcaaatgttttgataaa 27840117  T
Q  220 agatagtttgaaaaaa-ggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | || |||| |||||| |||||||||||||| ||||||||| ||||||||| ||||||||    
T  27840116 aaatggtttaaaaaaagggccacgagatgcactcaggttacatagagagcaggacgagtt 27840057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 22802970 - 22803047
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22802970 cattctgtataaattgtttccttagacgccggtagtttgagtgttgtagaattt-tataaatgatttgcgacccatttt 22803047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 27597815 - 27597730
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  27597815 cattctgtataactcgtttccttagacgccggtagtttgagtgttgtagaa-ttctataaatgatttacgacccattttccggcttg 27597730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 11323495 - 11323624
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaaga-tagtttgaaaaaaggccacgagatg 247  Q
    ||||| |||||||||||||||  ||| ||||||| |||||||| ||| ||  ||||||||||||| |||||| | |||||| |||||||| ||||| |||    
T  11323495 gctagctctgattattacaagttagatcgaactagaaatctcaagaa-tgctgtgcaaaggtttttatcgaaaaatagtttaaaaaaaggtcacgaaatg 11323593  T
Q  248 cagtcaggttacttagagagcatgacgagtt 278  Q
    || ||||||| ||||||||||| ||||||||    
T  11323594 cactcaggttgcttagagagcaggacgagtt 11323624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 23780731 - 23780809
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  23780731 cattatgtataactcgtttccctagacgttggtagtttgagtgttgtagaatttctataaatgatttgcaaaccatttt 23780809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 25576630 - 25576713
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||| ||||||||| ||||| ||||||| || |||||||| ||||||| |||||||||||| ||||||||||||    
T  25576630 agattgcaagtaaaaacaagacaaagttaaaagaaagagaaaaagtttaaa-gcataaacttaaaggaaatgaaaaatgcattgc 25576713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 22801540 - 22801623
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    ||||| ||||||||||||||| ||||||||||||||  |||| |||||||| ||||||| ||||| | ||||||||||||||||    
T  22801540 agatttcaagtaaaagcaagataaaattaaaggaaaaggtaaaagtttaaatgcataaacttaaaaggaatgtaaaatgcattg 22801623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 25597587 - 25597656
Alignment:
Q  371 tttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacc 440  Q
    ||||||||||| |||| | ||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  25597587 tttgtataactcgtttccgtagacacaggtagtttgagtgttgtagagtttctataaatgatttgcgacc 25597656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 11323783 - 11323856
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgaccca 442  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||| || | || |||||||||||||||    
T  11323783 cattctgtataactcgttttcctagacgccggtagtttgagtgttgaagaa-ttatgtatatgatttgcgaccca 11323856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 20478652 - 20478494
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaa-atgacgtgcaaaggttttaatcg 218  Q
    ||||| || ||||||| || |||||||  | ||||||||||||||||||   ||||||||||| | |||| ||||  |||  ||||||||||||| ||||    
T  20478652 tgtttgccagtgttttaggcaaactacaggttagttctgattattacaattcagaccgaactagagatcttaggagcatgttgtgcaaaggttttgatcg 20478553  T
Q  219 aagatag--tttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacga 275  Q
    || | ||  |||||||||   |||||||||||| |||||||||||||||| || |||||    
T  20478552 aaaaaagggtttgaaaaagatccacgagatgcactcaggttacttagagaccaggacga 20478494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 25576750 - 25576827
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||| ||| |||| |||| |||||| ||||||||||||||||||||||| || |||||||||| |||||||||    
T  25576750 cattatgtattactcgtttccctaaacgccgctagtttgagtgttgtagaatttcaat-aatgatttgcaacccatttt 25576827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 25568819 - 25568699
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg-aagatagtttgaaaaaaggccacgagatg 247  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| | |  |  ||||||||||||| |||| || | ||||||| |||||||||| | |||    
T  25568819 gctagttctgattattacaatcgagatcgaactagaaatctcaag-accgttgtgcaaaggtttttatcgaaaaagagtttgagaaaaggccacaaaatg 25568721  T
Q  248 cagtcaggttacttagagagca 269  Q
    || ||||||| |||| ||||||    
T  25568720 cactcaggttgcttacagagca 25568699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 25597487 - 25597536
Alignment:
Q  281 attgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaac 330  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  25597487 attgcaagtaaaggtaagacaaaattaaaggaaagagtaaaagtttaaac 25597536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 28140153 - 28140106
Alignment:
Q  399 gtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  28140153 gtagtttgagtattgtagaatttctataaatgatttgtgacccgtttt 28140106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 20478331 - 20478255
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||| | ||||||||||||||||||||||||| || | || |||||||||||||||||||    
T  20478331 cattctgtataactcgtttccctcg-cgccggtagtttgagtgttgtagaa-ttatgtatatgatttgcgacccatttt 20478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 31404098 - 31404046
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||| || ||||||| ||||||||| |||| ||||||||||||||||||    
T  31404098 cgccggtacttcgagtgttttagaatttcaataagtgatttgcgacccatttt 31404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 25597372 - 25597436
Alignment:
Q  201 gtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagaga 266  Q
    ||||||||||||| |||||| | |||||| |||| |||||||||||||| |||  |||||||||||    
T  25597372 gtgcaaaggttttgatcgaaaacagtttg-aaaagggccacgagatgcactcattttacttagaga 25597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 12810342 - 12810192
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||| ||      
T  12810342 ttgtttaccggtgttttcggcaaactacgggctagttctgattattacaagcgagaccgaactaaaaatatcaggacatgttgtgcaaaggttttgataa 12810243  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    || |  |||||||||| ||| |||||||||| |||||||||||||||||||    
T  12810242 aaaacggtttgaaaaagggcaacgagatgcactcaggttacttagagagca 12810192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 14633108 - 14632954
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| || |||  ||||||||||||| ||||    
T  14633108 ttgtttaaaggtgttttcggaaaactacgggctagttctgattattacaagcgagaccaaactagaaatctcatgacatgttgtgcaaaggttttgatcg 14633009  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || |  ||||| ||||||||||| ||||| | ||||||||||||||||||| ||||    
T  14633008 aaaacggtttg-aaaaaggccacaagatgtactcaggttacttagagagcaagacg 14632954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 11889843 - 11889695
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||||| |||||||||||| |||||||| | |||||||||||||||||||  ||||||||||| ||||||||||| |||  ||| ||||||||| |||||    
T  11889843 tgtttatcggtgttttcggcaaactacgggttagttctgattattacaagtaagaccgaactagaaatctcaggacatgttgtgtaaaggttttgatcga 11889744  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    | |  ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  11889743 aaacggtttg-aaaaaggccacgaaatgcactcaggttacttagagagca 11889695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 18558445 - 18558372
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18558445 tgtataacttgtttccctagacaccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 18558372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 12810146 - 12810062
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||||||    
T  12810146 agattgcaagtaaaagcaagacaaaattaaagtaaaggataaaagtttaaacgcataaacttaaaggaaatgtaaaatgcattgc 12810062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 14632913 - 14632829
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||    
T  14632913 agattgcaagtaaaagcaagataaaattaaaggaaagagtaaaagcttaaacgcataaacttaaaggaaatttaaaatgcattgc 14632829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 10070337 - 10070451
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| |||  ||||||||||||| |||||    
T  10070337 tgtttatcggtgttttcggcaaacaacgagctagttatgattattacaagcgagaccgaactagaaatcttaggacatgttgtgcaaaggttttgatcga 10070436  T
Q  220 agatagtttgaaaaa 234  Q
    | |  ||||||||||    
T  10070437 aaacggtttgaaaaa 10070451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 10070509 - 10070593
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||| ||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  10070509 agattgtaagtaaaagtaagataaaattaaaggaaagggtaaaagtttaaacgcataaatttaaaggaaatgtaaaattcattgc 10070593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 11889648 - 11889564
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||| |||||||| |||||||||||    
T  11889648 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaagtttaaacgcataaacttaagggaaatgttaaatgcattgc 11889564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 14632785 - 14632714
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14632785 tataactcgtttccctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacctatttt 14632714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 12810025 - 12809947
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12810025 cattctgtataactcgtttccccagacgccggtagtttgagtgttgtagaatttctataaatggtttgcgacccatttt 12809947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 11888238 - 11888160
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  11888238 cattctgtataactcgtttccctagacgccagtagtttgactgttgtagaatttctataaatgatttgtgacccatttt 11888160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 10070630 - 10070708
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| |||||||||||||| |  |  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  10070630 cattatgtataacttgtttcctcatgcgccgatagtttgagtgttgcagaatttctataaatgatttgcgacccatttt 10070708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 18558570 - 18558488
Alignment:
Q  281 attgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||| ||||| || | |||| || | ||||||||| |||||| |||||||||||||||||||||||||    
T  18558570 attgcaagtaaaagcaagataaaataaaggaaaagggtgaaagtttaaacacataaacttaaaggaaatgtaaaatgcattgc 18558488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 4697559 - 4697612
Alignment:
Q  393 acgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||  |||||||||| |||||||||||||| ||||||||||| ||||||    
T  4697559 acgccggtgctttgagtgttttagaatttctataagtgatttgcgactcatttt 4697612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 23242059 - 23242217
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||| |||  ||||||||||||| ||||    
T  23242059 ttgtttaccggtgtttttggcaaactacgggcttgttctgattattacaagcaagaccgaactagaaatctcaggacatgttgtgcaaaggttttgatcg 23242158  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || |  ||||| ||||||||| ||||||||| |||||||||||| |||||| ||||||||    
T  23242159 aaaacggtttg-aaaaaggcctcgagatgcactcaggttacttaaagagcaggacgagtt 23242217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 12149464 - 12149381
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12149464 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaaaagtttaaacgcataaa-ttaaaggaaatgtaaaatgcattgc 12149381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 21301672 - 21301543
Alignment:
Q  144 tacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacga 243  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||  || |||||||||| ||  || |  ||||| |||||||||||||    
T  21301672 tacgggctagttctgattattacaagcgagaccgaactagaaatctcaggacatgttgtacaaaggttttgataaaaaacggtttg-aaaaaggccacga 21301574  T
Q  244 gatgcagtcaggttacttagagagcatgacg 274  Q
    |||||| ||||||||||||||||||| ||||    
T  21301573 gatgcactcaggttacttagagagcaggacg 21301543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 24093389 - 24093305
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||    
T  24093389 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaagtataaacgcataaacttaaaggaaatgtaaaatgcattgc 24093305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 17983426 - 17983511
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  17983426 cattatgtataacttgtttccctagacgccggtagtttgagtgttgtagaatttc-ataaatgatttgcgacccgttttccggcttg 17983511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 17983304 - 17983389
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaatt-aaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  17983304 agatttcaagtaaaagcaagacaaaatttaaaggaaagagtaaaagtttaaacgcataaactttaaggaaatgtaaaatgcattgc 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 9006691 - 9006838
Alignment:
Q  132 ttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaa-atgacgtgcaaaggttttaatcgaagatagtttga 230  Q
    |||||||  ||||||||| ||||||||||||||||||||||||| |||||| | ||||||| |  |||  ||||||||||||| | |||| |  |||| |    
T  9006691 ttttcggctaactacgagttagttctgattattacaagcgagactgaactagagatctcagaagcatgttgtgcaaaggttttgaacgaaaaaggtttta 9006790  T
Q  231 aaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
     |||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  9006791 gaaaaggccacgagatgcactcaggttgcttagagagcaggacgagtt 9006838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 17983120 - 17983266
Alignment:
Q  131 gttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttga 230  Q
    |||||||| |||||| | ||||||| |||| ||||||| |||||| ||| || ||||||||||| |||  ||||||||||||| |||||| |  |||||     
T  17983120 gttttcggcaaactatgggctagttatgataattacaaacgagactgaagtagaaatctcaggacatgttgtgcaaaggttttgatcgaaaacggtttg- 17983218  T
Q  231 aaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    ||||||||||||||||||| ||| ||||||||||||||| || |||||    
T  17983219 aaaaaggccacgagatgcactcaagttacttagagagcaggatgagtt 17983266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 24093582 - 24093426
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||||||  ||||||| | ||||||||| | ||||||||||||||||| ||||| |||||||| |||||||| || |||  ||| ||||||||| |||||    
T  24093582 tgtttactagtgtttttgaaaaactacgggttagttctgattattaca-gcgaggccgaactataaatctcaagacatgttgtgaaaaggttttgatcga 24093484  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | || |||||||||| || ||||| ||||| |||||||||||||||| || ||||||||    
T  24093483 aaatggtttgaaaaa-ggtcacgaaatgcactcaggttacttagagatcaggacgagtt 24093426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 9007000 - 9007072
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9007000 tgtataactcgtttccctagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgcgacccatttt 9007072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 129 - 278
Target Start/End: Original strand, 23817915 - 23818067
Alignment:
Q  129 gtgttttcggaaaactacgagctagttctgattattacaa--gcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcgaagatag 225  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||||||||||| | |||||||||  |||  ||||||||||||| |||  | | ||    
T  23817915 gtgttttcggcaaactacgggctagttctgattattacaagcgcgagaccgaactagagatctcaggagcatgttgtgcaaaggttttgatcacaaaaag 23818014  T
Q  226 tttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
     || |||||   |||||||||||| ||||||||||||||||||| ||||||||    
T  23818015 gtttaaaaagaaccacgagatgcactcaggttacttagagagcaggacgagtt 23818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 21285191 - 21285111
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgca 359  Q
    |||||||  |||||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  21285191 agattgcttgtaaaatcaagacaaaattaaaggaaagagtaaaagtttaaacgaataaacttaaaggaaatgtaaaatgca 21285111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 21301952 - 21302036
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| | |||||||||||||||||| ||||||    
T  21301952 agattgcaagtaaaagcaagataaaattataggaaagggtaaaagtttaaacgcatagaattaaaggaaatgtaaaatacattgc 21302036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 15927809 - 15927688
Alignment:
Q  151 tagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggtttt--aatcgaagatagtttgaaaaaa-ggccacgagatg 247  Q
    |||||||| ||||||||||||||||||||||| | ||||||||| | |  |||||||||||||   |||||| | |||||||||||| ||||||||||||    
T  15927809 tagttctgtttattacaagcgagaccgaactagagatctcaggacacgttgtgcaaaggtttttctatcgaaaagagtttgaaaaaagggccacgagatg 15927710  T
Q  248 cagtcaggttacttagagagca 269  Q
    || ||||||| |||||||||||    
T  15927709 cactcaggttgcttagagagca 15927688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 23242242 - 23242326
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaagg-aaatgtaaaatgcattg 362  Q
    ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||||    
T  23242242 agattgcaagtaaaaacaagaaaaaatcaaaggaaagagtaaaagtttaaacgcataaacttaaaggaaaatttaaaatgcattg 23242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 15927530 - 15927453
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  15927530 cattctgtataactcgtttccctagacgcgggtagtttgagtgttgtagaa-ttcaataaatgatttgcgacccatttt 15927453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 24093252 - 24093190
Alignment:
Q  384 ttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24093252 ttttcctatgcgtcggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 24093190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 12149318 - 12149261
Alignment:
Q  397 cggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  12149318 cggtagtttgagtgttgtaaaatttctataaatgatttgcgacccatttttcgacttg 12149261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 12149605 - 12149505
Alignment:
Q  173 gaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatga 272  Q
    |||||||||| |||| |||||| |||  ||||||||||||| ||||||    |||||||||| |||||||||||||| ||||||||||||||||||| ||    
T  12149605 gaccgaactataaatttcaggacatgttgtgcaaaggttttgatcgaaagcggtttgaaaaa-ggccacgagatgcactcaggttacttagagagcaaga 12149507  T
Q  273 cg 274  Q
    ||    
T  12149506 cg 12149505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 278
Target Start/End: Complemental strand, 921514 - 921363
Alignment:
Q  129 gtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcg-aagatagt 226  Q
    |||||||| | |||||||| |||||||||||||||||||||| |||||||| || | ||||| |||  |||  |||||||||||||  ||| || |  ||    
T  921514 gtgttttcagcaaactacgggctagttctgattattacaagcaagaccgaagtagagatctcgggagcatgttgtgcaaaggttttggtcgaaaaagggt 921415  T
Q  227 ttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    ||||||||  | ||| ||||||| |||||||| |||||||||| ||||||||    
T  921414 ttgaaaaagagtcacaagatgcactcaggttatttagagagcaggacgagtt 921363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 21302105 - 21302151
Alignment:
Q  400 tagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  21302105 tagtttgagtgttgtagaatttctataaatgatttgggacccatttt 21302151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 22814918 - 22815043
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggtttta-atcgaagatagtttgaaaaaaggccacgagatg 247  Q
    ||||||||||||||||||||||||||  |||||| |||||||| ||   |  |||||||||||||  || | | | |||||||||||||||||||| |||    
T  22814918 gctagttctgattattacaagcgagattgaactagaaatctcaagacc-gttgtgcaaaggttttttataggaaaaagtttgaaaaaaggccacgaaatg 22815016  T
Q  248 cagtcaggttacttagagagcatgacg 274  Q
    || ||||||| ||||||||||| ||||    
T  22815017 cactcaggttgcttagagagcaggacg 22815043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 24477843 - 24477758
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| || ||||| || |||||| ||| |||||||    
T  24477843 cattttgtataactcgtttccctagacgctggtagtttgagtgttgtagaa-ttctgtatatgatctgtgacccactttccggcttg 24477758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 22263766 - 22263897
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggtttt--aatcg-aagatagtttgaaaaaaggccacgaga 245  Q
    |||||||||||| |||||||||||||||||| || |||||||| | | ||  |||||||||||||   |||| || | ||||||||||||||||||||      
T  22263766 gctagttctgatcattacaagcgagaccgaattagaaatctcaag-actgttgtgcaaaggtttttctatcgaaaaagagtttgaaaaaaggccacgaag 22263864  T
Q  246 tgcagtcaggttacttagagagcatgacgagtt 278  Q
    |||| ||||||| ||||||||| | ||||||||    
T  22263865 tgcactcaggtttcttagagagaaggacgagtt 22263897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 9006874 - 9006958
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||| | ||| ||||||| ||  |||| ||||||||| |||||| |||||||||| |||||||| |||||    
T  9006874 agattgcaagtaaaagcaatataaagttaaagggaaaggtaaaagtttaaacacataaacttaaaggaaaggtaaaatgtattgc 9006958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 23818224 - 23818305
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggta--gtttgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    |||| ||||||||| |||| |||||||| |||||  |||||||||||||||||||  ||| ||||||||||||||||||||||    
T  23818224 cattatgtataactcgtttccctagacgtcggtatagtttgagtgttgtagaatta-tattaatgatttgcgacccatttttc 23818305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 13110299 - 13110351
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||| || |||||||||||||||||||||| |||||||||||| |||||    
T  13110299 cgccggtacttcgagtgttgtagaatttctataagtgatttgcgacctatttt 13110351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 27123637 - 27123594
Alignment:
Q  405 tgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  27123637 tgagtgttgtagaatttctataattgatttgcgactcatttttc 27123594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 921199 - 921122
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| |||| || ||||||||||||||||||||||| || | || |||||||| ||||||||||    
T  921199 cattatgtataactcgtttccctaaacaccggtagtttgagtgttgtagaa-ttatgtatatgatttgagacccatttt 921122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 16600659 - 16600713
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    |||||||| || |||||||||||||||||||||| |||||||| |||| ||||||    
T  16600659 cgccggtacttcgagtgttgtagaatttctataagtgatttgcaacccgtttttc 16600713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 9286390 - 9286340
Alignment:
Q  396 ccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||| || |||||||||||||||||||||  ||||||||||||| ||||    
T  9286390 ccggtacttcgagtgttgtagaatttctatatgtgatttgcgacccgtttt 9286340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 24478132 - 24478090
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||    
T  24478132 gctagttctgatttttacaagcgagatcgaacgaaaaatctca 24478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 421
Target Start/End: Complemental strand, 22739106 - 22739073
Alignment:
Q  388 cctagacgccggtagtttgagtgttgtagaattt 421  Q
    ||||||||||||| ||||||||||||||||||||    
T  22739106 cctagacgccggtggtttgagtgttgtagaattt 22739073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 16227049 - 16226901
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||  ||||||| ||||| ||  |    
T  16227049 tgtttaccggtgttttcggaaaactacgggctagttctgattattacaaacgagaccgaactagaaatctcaggacatgttgtgcaaatgttttgataaa 16226950  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    | |  ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  16226949 aaacggtttg-aaaaaggccacgaaatgcactcaggttacttagagagca 16226901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 13908471 - 13908626
Alignment:
Q  122 tttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaag 221  Q
    ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||| |||  |||| |||||||| ||||||     
T  13908471 tttacaggtgttttcggcaaactacgggctagatctgattattacaagcgggaccgaactagaaatctcaggacatgtagtgcgaaggttttgatcgaaa 13908570  T
Q  222 atagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | |||||| ||||||||||| | ||||| |||||||||||| |||||| ||||||||    
T  13908571 acagtttg-aaaaaggccacaacatgcactcaggttacttacagagcaggacgagtt 13908626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 16224256 - 16224173
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  16224256 agattgtaagtaaaagcaagacaaaattaaaggaaagagtaaaagtttaaacgcataaacttaaaggaaatgtaaaatgcattg 16224173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 22928246 - 22928403
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||  |||||||||||||  |||    
T  22928246 ttgtttaccggtgttttcgacaaactacgggctagttctgattattacaagcgagaacgaactagaaatctcaggacatgttgtgcaaaggttttgttcg 22928345  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || |  ||||| ||||||||||||| | | | ||| ||||||||||||||| ||||||||    
T  22928346 aaaacggtttg-aaaaaggccacgaaacgtactca-gttacttagagagcaggacgagtt 22928403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 16224449 - 16224293
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    ||||||||||| ||| ||| |||||||| ||||||| |||||||||||||||| ||||||||| |||| ||| || |||  ||||||||||||| |||||    
T  16224449 tgtttaccggtattt-cggcaaactacgtgctagttttgattattacaagcgataccgaactagaaatttcaagacatgttgtgcaaaggttttgatcga 16224351  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | |  ||||| ||||||||||||||| ||| ||| |||||||||||| || ||||||||    
T  16224350 aaacggtttg-aaaaaggccacgagaggcactcatgttacttagagaccaggacgagtt 16224293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 13409899 - 13409976
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13409899 cattttgtataactcgtttccctagacgctggtagtttgagtgttgtagaa-ttctataaatgatttgcgacccatttt 13409976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 22928561 - 22928639
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  22928561 cattatgtataactcgtttccctagacgccggtagcttgagtgttgtagaatttctataaatgatttgtgacccatttt 22928639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 22928440 - 22928524
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||  |||| |||||||| ||||||| |||||| |||| |||||||||||||    
T  22928440 agattgcaagtaaaagcaagataaaattaaaggaaatggtaaaagtttaaatgcataaacttaaagcaaatttaaaatgcattgc 22928524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 16226735 - 16226657
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16226735 cattctgtataactcgtttccctatgcgctggtagtttgagtgttgtagaatttctataaatgatttgtgacccatttt 16226657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 16226855 - 16226772
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||| | ||||||| |||| ||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||    
T  16226855 agattgtaggtaaaaggaagataaaattaaaggaaagggtaaaagtttaaacgcataaacttaaagg-aatgtaaaatgcattgc 16226772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 16224134 - 16224080
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttc 422  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16224134 cattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaatttc 16224080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 363
Target Start/End: Original strand, 13908672 - 13908744
Alignment:
Q  288 gtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||| |||||||||||||||||||||   |||||||||| ||| ||  ||||||||||||||||||||||||    
T  13908672 gtaaaagctagacaaaattaaaggaaagag---tagtttaaacacatgaacctaaaggaaatgtaaaatgcattgc 13908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 15759673 - 15759729
Alignment:
Q  389 ctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||    
T  15759673 ctagacgccggtacttctagtgtt-tagaatttctataaatgatttgcgacccatttt 15759729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 13908786 - 13908838
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctat 425  Q
    ||||||| | |||| |||||||||||||||||||| |||||||||||||||||    
T  13908786 tgtataagtggtttccctagacgccggtagtttgaatgttgtagaatttctat 13908838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 16925325 - 16925368
Alignment:
Q  226 tttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  16925325 tttgaaaaaaggccacgaaatgcactcaggttgcttagagagca 16925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 16925549 - 16925619
Alignment:
Q  383 gttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||||||||||||||||||||  ||| || ||||||||||||||  ||| |||||||    
T  16925549 gtttccctagacgctggtagtttgagtgttgtagaa-atctgtatatgatttgcgaccctctttccggcttg 16925619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 20194547 - 20194706
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||  ||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||||    
T  20194547 ttgtttactagtgttttcggaaaactacaggctagttctaat-attacaagcgagaccgaactaaaaatctcaggacatgttgtgcaaaggttttgatcg 20194645  T
Q  219 aagatagtttgaaaaaa-ggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || | |||||||||||| |||||||| ||||| | ||||||||||||||||| || |||||    
T  20194646 aaaacagtttgaaaaaagggccacgaaatgcacttaggttacttagagagcaagatgagtt 20194706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 22088570 - 22088729
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||  ||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||||    
T  22088570 ttgtttactagtgttttcggaaaactacaggctagttctaat-attacaagcgagaccgaactaaaaatctcaggacatgttgtgcaaaggttttgatcg 22088668  T
Q  219 aagatagtttgaaaaaa-ggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || | |||||||||||| |||||||| ||||| | ||||||||||||||||| || |||||    
T  22088669 aaaacagtttgaaaaaagggccacgaaatgcacttaggttacttagagagcaagatgagtt 22088729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 17863618 - 17863472
Alignment:
Q  122 tttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaag 221  Q
    |||||| ||||||| || ||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||   |||||||||||| ||||||     
T  17863618 tttacctgtgtttttggcaaattacgggctagttctgattattacaagcgataccgaactagaaatctcaggacatgttttgcaaaggttttgatcgaaa 17863519  T
Q  222 atagtttgaaaaaaggccacgagatgcagtcaggttacttagagagca 269  Q
    || ||||| |||||||||| || ||||| |||||||||||||||||||    
T  17863518 atggtttg-aaaaaggccatgaaatgcactcaggttacttagagagca 17863472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 12410300 - 12410458
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgag-ctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||||||||||| | |||||||  | |||||||| |||||||||||| |||||||| ||||||||||| || |||  ||||||||||||| ||||    
T  12410300 tgtttaccggtgttttcagcaaactacctggctagttctaattattacaagcaagaccgaattaaaaatctcacgacatgttgtgcaaaggttttgatcg 12410399  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || | |||||| ||||||| ||||| ||||| | ||||||||||||||||| ||||||||    
T  12410400 aaaacagtttg-aaaaaggtcacgaaatgcactgaggttacttagagagcaggacgagtt 12410458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 7391281 - 7391197
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| | |||||||||||||||||||||||||    
T  7391281 agattgcaagtaaaagcaagacaaaattaaaggaaagggtaaaattttaaacgcatacacttaaaggaaatgtaaaatgcattgc 7391197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 21375827 - 21375978
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||| |||||||||| |||||||| || |||||||||| ||  ||| |||||||||||| |||||||| || |||  ||||||||||||| || |    
T  21375827 ttgtttacctgtgttttcggcaaactacgggccagttctgattgttgaaagtgagaccgaactagaaatctcaagacatgttgtgcaaaggttttgatag 21375926  T
Q  219 aagatagtttgaaaaaa-ggccacgagatgcagtcaggttacttagagagca 269  Q
    || |  ||||||||||| ||||| |||||||| |||||||||||||||||||    
T  21375927 aaaaatgtttgaaaaaagggccatgagatgcactcaggttacttagagagca 21375978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 18560441 - 18560358
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||    
T  18560441 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaagtttaaacgcataaacttaaaggaaatgt-aaatgcattgc 18560358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 7391155 - 7391082
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7391155 tgtataactcgtttccctagacgctggtagtttgagtgttgtagaatttctataaatgacttgcgacccatttt 7391082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 12410495 - 12410579
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||||| |||||| |||||||||||| |||||    
T  12410495 agattgcaagtaaaagcaagataaaattaaatgaaagggtaaaagtttaaacgcataaacttaaagaaaatgtaaaatgtattgc 12410579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 446
Target Start/End: Original strand, 25945918 - 25945989
Alignment:
Q  374 gtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25945918 gtataactcgtttccctagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgcgacccatttt 25945989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 11306799 - 11306714
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||||||    
T  11306799 cattctgtataactcgtttccctagacgccggtagtttgagtgttgtagaa-ttctttatatgatttgcgacccacttttcggcttg 11306714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 25915456 - 25915534
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| ||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25915456 cattctgtataactcgttttcctatacgtcagtagtttgagtgttgaagaatttctataaatgatttgcgacccatttt 25915534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 20194742 - 20194826
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| ||||||    
T  20194742 agattgcaagtaaaagcaagataaaattaaaggtaagggtaaaagtttaaacacataaacttaaaggaaatgtagaattcattgc 20194826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 22088765 - 22088849
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| ||||||    
T  22088765 agattgcaagtaaaagcaagataaaattaaaggtaagggtaaaagtttaaacacataaacttaaaggaaatgtagaattcattgc 22088849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 11988503 - 11988588
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||    
T  11988503 cattctgtataactcgtttccttagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgtggcccattttccggcttg 11988588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 31137685 - 31137525
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcg 218  Q
    ||||| || |||||||| | |||||||||| ||||||||||| ||||||||||||||| |||| | |||||||||  | |  ||||||||||||| || |    
T  31137685 tgtttgcctgtgttttcagcaaactacgaggtagttctgattgttacaagcgagaccggactagagatctcaggagcacgttgtgcaaaggttttgattg 31137586  T
Q  219 aagata-----gtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || | |     ||||||||||  ||||||||||||| |||| |||||||||||||||||||    
T  31137585 aaaaaaaaaaggtttgaaaaagagccacgagatgcactcagattacttagagagcatgacg 31137525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 21376023 - 21376106
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattg 362  Q
    ||||| ||||||||||||||| ||| ||||||||||  |||| |||||||||||||||| ||||| | ||||||||||||||||    
T  21376023 agattacaagtaaaagcaagataaagttaaaggaaaaggtaaaagtttaaacgcataaacttaaaaggaatgtaaaatgcattg 21376106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 23010815 - 23010694
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggtttt--aatcgaagatagtttgaaaaaaggccacgaga 245  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||  |||   ||||||||||||   |||||| |||||||| |||||||||||||      
T  23010815 gctagttctgattattacaagcgagaccaaactagaaatctcaagaccatg--ttgcaaaggtttttgtatcgaaaatagtttgtaaaaaggccacgaag 23010718  T
Q  246 tgcagtcaggttacttagagagca 269  Q
    |||| ||||||| |||||||||||    
T  23010717 tgcactcaggttgcttagagagca 23010694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 7391465 - 7391318
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||||           ||||| | ||||||||||| |||  | ||||||||||| |||||    
T  7391465 tgtttaccgctgttttcgacaaactacgggctagttctgattatt-----------cgaacaagaaatctcaggacatgttgcgcaaaggttttgatcga 7391377  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    | |  |||||||||| ||||||| |||||| | ||||||||||||||||| ||||||||    
T  7391376 aaacggtttgaaaaagggccacgggatgcacttaggttacttagagagcaggacgagtt 7391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 25945790 - 25945874
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||| | ||| ||||||||||  |||| ||||||||| |||||| |||||||| | ||||||||||||||    
T  25945790 agattgcaagtaaaagcaatataaagttaaaggaaaaggtaagagtttaaacacataaacttaaaggagaggtaaaatgcattgc 25945874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 12418363 - 12418448
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| |||||||| || ||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  12418363 cattctgtataactcgtttccctagacgtcgttagtttgagtgttgtagaa-ttctgtatatgatttgcgacccactttccggcttg 12418448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 12421283 - 12421198
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| |||||||| || ||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  12421283 cattctgtataactcgtttccctagacgtcgttagtttgagtgttgtagaa-ttctgtatatgatttgcgacccactttccggcttg 12421198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 17863326 - 17863248
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| |||||||||  ||||| ||  || |||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  17863326 cattctgtataactctttttcatatgcgtcggtagtttgagtgttgtagaatttctataaatgatgtgcgagccatttt 17863248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 267
Target Start/End: Original strand, 25945605 - 25945743
Alignment:
Q  130 tgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctc-aggaaatgacgtgcaaaggttttaatcgaagatagttt 228  Q
    ||||||||| |||||||  |||||||||||||||||||||| ||||||||||| | ||||| |||  |||  |||||| |||||| | |||  |  ||||    
T  25945605 tgttttcggcaaactacaggctagttctgattattacaagcaagaccgaactagagatctcaagggcatgttgtgcaatggttttgaacgagaaaggttt 25945704  T
Q  229 gaaaaaaggccacgagatgcagtcaggttacttagagag 267  Q
     | |||||||||||||||||| ||| ||| |||||||||    
T  25945705 tagaaaaggccacgagatgcactcaagttgcttagagag 25945743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 34501005 - 34501133
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatc-gaagatagtttgaaaaaaggccacgagatg 247  Q
    |||||||||||||||||||||||||| ||| ||| |||||||| | | ||  ||||||||||||| ||| ||| | ||||| |||||||||||||| | |    
T  34501005 gctagttctgattattacaagcgagatcgatctagaaatctcaag-actgttgtgcaaaggtttttatctgaaaagagttt-aaaaaaggccacgaaagg 34501102  T
Q  248 cagtcaggttacttagagagcatgacgagtt 278  Q
    || ||||||| ||||||||| | ||||||||    
T  34501103 cactcaggttgcttagagagtaggacgagtt 34501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 18560605 - 18560477
Alignment:
Q  151 tagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaa-ggccacgagatgca 249  Q
    ||||| |||||||||||||| |||  |||||| |||| | |||| |||  ||||||||||||| |||||  |  ||||||||||| ||||| ||||||||    
T  18560605 tagttatgattattacaagcaagatagaactagaaattttaggacatgttgtgcaaaggttttgatcgataacggtttgaaaaaagggccatgagatgca 18560506  T
Q  250 gtcaggttacttagagagcatgacgagtt 278  Q
     |||  ||| |||||||||||||||||||    
T  18560505 ctcaaattatttagagagcatgacgagtt 18560477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 20192007 - 20191900
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgc 248  Q
    ||||||||| |||||||||||| |||  |||||| |||||||| ||  |   ||||||||||||| |||||| | |||||||||||||||||||| ||||    
T  20192007 gctagttctaattattacaagccagattgaactagaaatctcaagaccttt-gtgcaaaggtttttatcgaaaagagtttgaaaaaaggccacgaaatgc 20191909  T
Q  249 agtcaggtt 257  Q
    | |||||||    
T  20191908 actcaggtt 20191900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 22143984 - 22144091
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgc 248  Q
    ||||||||| |||||||||||| |||  |||||| |||||||| ||  |   ||||||||||||| |||||| | |||||||||||||||||||| ||||    
T  22143984 gctagttctaattattacaagccagattgaactagaaatctcaagaccttt-gtgcaaaggtttttatcgaaaagagtttgaaaaaaggccacgaaatgc 22144082  T
Q  249 agtcaggtt 257  Q
    | |||||||    
T  22144083 actcaggtt 22144091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 20228786 - 20228833
Alignment:
Q  226 tttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgac 273  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||    
T  20228786 tttgaaaaaaggccacgagatgcactcaggttgcctagagagcatgac 20228833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 22122770 - 22122817
Alignment:
Q  226 tttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgac 273  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||    
T  22122770 tttgaaaaaaggccacgagatgcactcaggttgcctagagagcatgac 22122817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 23590808 - 23590739
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcga 438  Q
    |||| ||||||||| |||| |||||||||  |||||||||||||||||||| |||| || |||||||||||    
T  23590808 cattctgtataactcgtttccctagacgctagtagtttgagtgttgtagaa-ttctgtatatgatttgcga 23590739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 16142653 - 16142685
Alignment:
Q  414 tagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||||||||||||||||||||||    
T  16142653 tagaatttctataaatgatttgcgacccatttt 16142685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 23010500 - 23010449
Alignment:
Q  388 cctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacc 440  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||| ||||    
T  23010500 cctagacgcctgtagtttgagtgttgtagaa-ttctatatatgatttgtgacc 23010449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 20194863 - 20194941
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| || |  |||||| ||| |||||| ||||||||||||||| |||||||  ||||||||| |||||    
T  20194863 cattatgtataactcgtgtctctagacaccgatagtttaagtgttgtagaatttttataaattgtttgcgacctatttt 20194941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 22088886 - 22088964
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| || |  |||||| ||| |||||| ||||||||||||||| |||||||  ||||||||| |||||    
T  22088886 cattatgtataactcgtgtctctagacaccgatagtttaagtgttgtagaatttttataaattgtttgcgacctatttt 22088964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 222396 - 222554
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||||| || |||  ||||||| ||||| ||||    
T  222396 ttgtttaccggtgttttcagcaaacaacgggctagttctgattattacaagcgagaccgaactagaaatctcaagacatgttgtgcaaatgttttgatcg 222495  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || |  ||||  ||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  222496 aaaacggttt-taaaaaggccacgagatgcactcaggttacttagagagaaggacgagtt 222554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 50446 - 50533
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttga 455  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||||| || |||||    
T  50446 cattttgtataacttgtttccctagacgccggtagtttgagtgttgtaaaaattttataaatgatttgcgacccattttccgacttga 50533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 50127 - 50284
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||  ||||||||||||| ||      
T  50127 ttgtttaccggtgtttttgacaaactacgggctagttctgattattacaagcgagaccgagctagaaatctcatgacatgttgtgcaaaggttttgataa 50226  T
Q  219 aagata--gtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || | |  | || |||||||||||||| ||||| |||||||||||||| |||| ||||    
T  50227 aaaaaaatggtttaaaaaaggccacgaaatgcactcaggttacttagaaagcaggacg 50284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 50325 - 50407
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcatt 361  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||    
T  50325 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaagtttaaacgcataaacttaaaggaaaggtaaaatgcatt 50407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 222590 - 222675
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaagg-aaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||    
T  222590 agattgcaagtaaaagcaagacaaaatcaaaggaaagagtaaaagtttaaacgcataaacttaaaggaaaaggtaaaatgcattgc 222675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 222719 - 222789
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||| |||| | ||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  222719 tataactcgtttccttagacaccgatagtttgagtgttgtagaa-ttcaataaatgatttgcgacccatttt 222789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 184184 - 184338
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| || |||  ||||||||||||| ||||    
T  184184 ttgtttaaaggtgttttcggaaaactacgggctagttctgattattacaagcgagaccaaactagaaatctcatgacatgttgtgcaaaggttttgatcg 184283  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    || |  ||||| ||||||||||| ||||| | ||||||||||||||||||| ||||    
T  184284 aaaacggtttg-aaaaaggccacaagatgtactcaggttacttagagagcaagacg 184338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 184379 - 184463
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||    
T  184379 agattgcaagtaaaagcaagataaaattaaaggaaagagtaaaagcttaaacgcataaacttaaaggaaatttaaaatgcattgc 184463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 184507 - 184578
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  184507 tataactcgtttccctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacctatttt 184578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 22010842 - 22010995
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||| ||| |    
T  22010842 tgtttatcggtgttttcgggaaactacgggctagttttgattattacaagcgagaccgaactagaaatctcaggacatgttgtgcaaaggttttgatcaa 22010941  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    | |  ||||| ||||||||||| | ||||| ||||||||||||||| ||| ||||    
T  22010942 aaacggtttg-aaaaaggccacaaaatgcactcaggttacttagagggcaggacg 22010995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 36197029 - 36196872
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||| |||||||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||| |||  ||||||||||||| |  |    
T  36197029 ttgtttatcggtgttttcggcatactacgggctagttctgattattacaagcgggaccgaactagaaatcacaggacatgttgtgcaaaggttttga-gg 36196931  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || | |  ||| ||||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  36196930 aaaacaacttg-aaaaaggccacgaaatgcactcaggttacttaaagagcaagacgagtt 36196872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 25769499 - 25769649
Alignment:
Q  123 ttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaaga 222  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||| | |||||||||| ||||| ||||| |||  || |||||||||| |   || |    
T  25769499 ttaccggtgttttcgacaaactacgggctagttctgattattacaagagggaccgaactagaaatcccaggacatgttgtccaaaggttttgagaaaaaa 25769598  T
Q  223 tagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
     |||||| ||||||||||||| |||||  |||||||||||||||||| ||||    
T  25769599 cagtttg-aaaaaggccacgaaatgcacgcaggttacttagagagcaagacg 25769649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 373 - 455
Target Start/End: Complemental strand, 22703646 - 22703564
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttga 455  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| || |||||    
T  22703646 tgtataacttgttttccaagacgccggtaatttgagtgttgaagaatttctataaatgatttgcgacccgttttccgacttga 22703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 22969807 - 22969659
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    |||| ||||||||||| || ||| |||| ||||||||||| |||||||||||||||||||||| | |||||| || ||   ||||||||||||| |||||    
T  22969807 tgttaaccggtgtttttggcaaattacgggctagttctgactattacaagcgagaccgaactagatatctcacgacat---gtgcaaaggttttgatcga 22969711  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatga 272  Q
    | |  ||||| |||||||||||||  |||| ||||||||| ||||||||||||    
T  22969710 aaacggtttg-aaaaaggccacgaagtgcactcaggttacctagagagcatga 22969659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 22969615 - 22969531
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||||||||| ||||||||||||||| |||| | ||||||| |||||| ||||||||||||| |||||||||||    
T  22969615 agattgcaagtaaaagcaagataaaattaaaggaaagggtaaaaatttaaacacataaacttaaaggaaatgttaaatgcattgc 22969531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 130 - 274
Target Start/End: Complemental strand, 24924379 - 24924231
Alignment:
Q  130 tgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcgaagata---g 225  Q
    ||||||||| |||||||| | |||||||||||||||||||||| ||||||||| | |||||||||  |||  ||||||| ||||| |||||| | |   |    
T  24924379 tgttttcggcaaactacgggttagttctgattattacaagcgaaaccgaactagagatctcaggagcatgttgtgcaaaagttttgatcgaaaaaaaggg 24924280  T
Q  226 tttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    |||||||||  | ||||| ||||| ||||||||||||||||||||||||    
T  24924279 tttgaaaaagagacacgatatgcactcaggttacttagagagcatgacg 24924231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 22011148 - 22011221
Alignment:
Q  373 tgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||| ||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22011148 tgtataacttgtttccctatgcaccggtagtttgaatgttgtagaatttctataaatgatttgcgacccatttt 22011221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 22806338 - 22806415
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccattt 445  Q
    |||| |||||||||  |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22806338 cattctgtataactcattttcctagacatcggtagtttgagtgttgtagaatttctttaaatgatttgcgacccattt 22806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 36196724 - 36196651
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36196724 tataactcgttttcctatgcaccggtagtttgagtgttgtagaatttctataaatgatttgcgacctatttttc 36196651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 25769799 - 25769870
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||| ||||  ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25769799 tataacttgtttccctatgcgccgatagtttgagtgttgtagaatttatataaatgatttgcgacccgtttt 25769870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 24924061 - 24923985
Alignment:
Q  377 taacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||| |||| ||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  24924061 taactcgtttccctagacgtaggtagtttgagtgttgtagaa-ttctataaatgattagcgacccattttccggcttg 24923985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 22969468 - 22969416
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  22969468 cgcccgtagtttgggtgttgtagaatttctataaatgatttgcgacccatttt 22969416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 17987547 - 17987632
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||| ||||| |||| || ||||||||||||||| ||| |||||||    
T  17987547 cattctgtataactcgtttccctagacgtcggtagtttgagtgttttagaa-ttctgtatatgatttgcgacccactttccggcttg 17987632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 23779145 - 23779078
Alignment:
Q  377 taacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccattt 445  Q
    ||||| |||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  23779145 taactcgtttccctagacgcccgtagtttgagtgttgtagaa-ttctatatatgatttgcgacctattt 23779078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 23866098 - 23866031
Alignment:
Q  377 taacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccattt 445  Q
    ||||| |||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  23866098 taactcgtttccctagacgcccgtagtttgagtgttgtagaa-ttctatatatgatttgcgacctattt 23866031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 17810852 - 17810801
Alignment:
Q  312 aaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  17810852 aaagggtaaaagtttaaacacataaatttaaaggaaatgtaaaatgcattgc 17810801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 16075632 - 16075717
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||||||| |||| |||||||||||||| || | || ||||||||||||||  ||| |||||||    
T  16075632 cattctgtataactcgtttccctagacgccgatagtatgagtgttgtagaa-ttatgtatatgatttgcgaccctctttccggcttg 16075717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 16470428 - 16470306
Alignment:
Q  145 acgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcgaagata-gtttgaaaaaaggccacg 242  Q
    |||| |||||||| |||||||||||||||||||||||| | ||||||| |  |||  ||| ||||||||| || ||| | | ||||  |||| |||||||    
T  16470428 acgaactagttcttattattacaagcgagaccgaactagagatctcagaatcatgttgtgtaaaggttttgattgaaaaaaggttttgaaaacggccacg 16470329  T
Q  243 agatgcagtcaggttacttagag 265  Q
    ||| ||| |||||||||||||||    
T  16470328 agaagcactcaggttacttagag 16470306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 20547204 - 20547258
Alignment:
Q  224 agtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    |||||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||    
T  20547204 agtttgaaaaaaggccacgaaatgcactcaggttgcttagaaagcaggacgagtt 20547258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 25769709 - 25769755
Alignment:
Q  317 gtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  25769709 gtaaaagtttaaacgcataaacttaaaggaaaggtaaaatgcattgc 25769755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 36196814 - 36196768
Alignment:
Q  317 gtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||    
T  36196814 gtaaaagtttaaacgcataaacttaaaggaaaggtaaaatgcattgc 36196768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 17811062 - 17810994
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatc 188  Q
    |||||||| ||||||| |  |||||||| ||||  |||||||||||||||||||| ||||||| |||||    
T  17811062 tgtttaccagtgtttttgataaactacgggctaactctgattattacaagcgagatcgaactagaaatc 17810994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 22011050 - 22011106
Alignment:
Q  307 aaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||| |||| || |||| |||||||| |||||||||||||||||||||||||    
T  22011050 aaagcaaagggtaaaagcttaagcgcataaacttaaaggaaatgtaaaatgcattgc 22011106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 16075336 - 16075378
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||    
T  16075336 gctagttctgattattacaagcgaaaccaaactagaaatctca 16075378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 23779449 - 23779411
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaat 187  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  23779449 gctagttctgattattacaagcgagatcgaactagaaat 23779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 23866402 - 23866364
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaat 187  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  23866402 gctagttctgattattacaagcgagatcgaactagaaat 23866364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 24878465 - 24878514
Alignment:
Q  397 cggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||| || |||||||||||||||||||||| ||||||| |||| |||||    
T  24878465 cggtaattcgagtgttgtagaatttctataagtgatttgagacctatttt 24878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 130 - 274
Target Start/End: Original strand, 25401498 - 25401645
Alignment:
Q  130 tgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcg--aagatagt 226  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||  |||  ||||||||||||| ||||  || || ||    
T  25401498 tgttttcggaaaactacgggctagttctgattattacaagcgataccgaactacagatctcaggagcatgttgtgcaaaggttttgatcgaaaaaatggt 25401597  T
Q  227 ttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| ||||    
T  25401598 ttgaaaaagagccacgagatgcactcaggttacttagagagcaggacg 25401645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 446
Target Start/End: Complemental strand, 22533765 - 22533687
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22533765 cattctgtataactcgtttccctagactccggtagtttgaatgttgtagaatttctataaatgatttgcgacccatttt 22533687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 454
Target Start/End: Original strand, 25401803 - 25401880
Alignment:
Q  376 ataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  25401803 ataacttgtttccctagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgtgacccattttccggcttg 25401880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 10159159 - 10159027
Alignment:
Q  140 aaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaa-atgacgtgcaaaggttttaatcgaagatag--tttgaaaaaag 236  Q
    |||| ||| ||||||||| ||| |||||||||||||||||||| | |||||||||  |||  |||||||||||||||||||| | ||  |||||||||      
T  10159159 aaaccacgggctagttctaattcttacaagcgagaccgaactagagatctcaggagtatgttgtgcaaaggttttaatcgaaaaaagggtttgaaaaaga 10159060  T
Q  237 gccacgagatgcagtcaggttacttagagagca 269  Q
    ||||||||||||| |||||||||||||||||||    
T  10159059 gccacgagatgcactcaggttacttagagagca 10159027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 22533885 - 22533802
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||    
T  22533885 agattgcaagtaaaaacaa-acaaaattaaaggaaagagtaaaagtttaaacgcacaaacttaaaggaaaagtaaaatgcattgc 22533802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 18523322 - 18523167
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatc 217  Q
    ||||||||  |||||||||| |||||||  |||| ||||||||||||||||||||| ||||||| |||||| ||||  |||  ||||||||||||  |||    
T  18523322 ttgtttacaagtgttttcggcaaactacaggctaattctgattattacaagcgagatcgaactagaaatcttaggagcatgttgtgcaaaggtttcgatc 18523223  T
Q  218 gaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    ||| |  ||||| |||||||| |||||||||| | || |||||||||||||| ||||    
T  18523222 gaaaaaggtttg-aaaaaggcgacgagatgcacttagtttacttagagagcaggacg 18523167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 4600980 - 4601065
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || |||| || || |||||||||||  |||||| ||||    
T  4600980 cattttgtataacttgtttccctagacgccggtagtttgagtgttgta-aaattctgtatataatttgcgaccctcttttcgacttg 4601065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 10158859 - 10158774
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| |||||| | ||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||    
T  10158859 cattctgtataactcgtttccctagaggacggtagtttgagtgttgtagaattt-tgtatatgatttgcgacccattttccggcttg 10158774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 20886344 - 20886470
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaa-ggccacgagatg 247  Q
    ||||||||||||| ||||||| |||||||||||| | ||||||| | | |  |||||||  |||| |||||| | |||||||||||| ||||||||||||    
T  20886344 gctagttctgattgttacaagtgagaccgaactagagatctcagaacacgttgtgcaaacatttttatcgaaaagagtttgaaaaaagggccacgagatg 20886443  T
Q  248 cagtcaggttacttagagagcatgacg 274  Q
    || ||||||| ||||||| ||| ||||    
T  20886444 cattcaggttgcttagagggcaagacg 20886470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 21291043 - 21290958
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| |||| ||||| |||||||||||||||||||| ||||||| |||||||| |||||| |||||||||||    
T  21291043 cattgtgtataactcgtttccctatacgccagtagtttgagtgttgtagaa-ttctatatatgatttgtgacccacttttcggcttg 21290958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 18523126 - 18523042
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||||||||| |||||||||||||||| |||| || |||||| ||||||  |||| | |||| ||||||||||||    
T  18523126 agattgcaagtaaaagcaaggcaaaattaaaggaaagggtaaaaggttaaacacataaacataaaaggaatgaaaaatgcattgc 18523042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 20886634 - 20886709
Alignment:
Q  372 ttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    |||||||||| |||| |||||||| ||||||||| |||||||||||| |||||||||||||||  ||||||||||||    
T  20886634 ttgtataactcgtttccctagacgtcggtagtttaagtgttgtagaa-ttctataaatgatttctgacccatttttc 20886709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 18522985 - 18522928
Alignment:
Q  388 cctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  18522985 cctagacaccggtagtttgagtgttgtagaattt-tataaatgatctgcgacccatttt 18522928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 18780640 - 18780725
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||| ||||||||||||||||||||||||||| |||| || ||||||||||||||  ||| |||||||    
T  18780640 cattctgtataactcgtttccctggacgccggtagtttgagtgttgtagaa-ttctgtatatgatttgcgaccctctttccggcttg 18780725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 33129006 - 33128921
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||| ||||||||||||||||||||||| || | || |||||||||||| || ||| |||||||    
T  33129006 cattctgtataactcgtttccctagacaccggtagtttgagtgttgtagaa-ttatgtatatgatttgcgactcactttccggcttg 33128921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 448
Target Start/End: Complemental strand, 36571709 - 36571667
Alignment:
Q  406 gagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  36571709 gagtgttgtagaatttctataagtgatttgcgacccatttttc 36571667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 20886510 - 20886592
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||| |||||||| | ||||||||||||||| |||| ||||||| | |||||| || ||||||| ||||||||||||||    
T  20886510 agattgcaagcaaaagcaatataaaattaaaggaaag-gtaaaagtttaagcacataaaatt-aaggaaaggtaaaatgcattgc 20886592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 13202130 - 13202085
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgac 439  Q
    |||||||| || |||||||||||||||||||||| |||||||||||    
T  13202130 cgccggtatttcgagtgttgtagaatttctataagtgatttgcgac 13202085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 25400435 - 25400553
Alignment:
Q  151 tagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggttttaatcg-aagatagtttgaaaaaaggccacgagatgc 248  Q
    |||||||||||||||||||||||| ||||||| |||||| | ||  ||   |||||||| |||| |||| || | ||||||| |||||||||| | ||||    
T  25400435 tagttctgattattacaagcgagatcgaactagaaatcttaagaccat--tgtgcaaagatttttatcgaaaaagagtttgagaaaaggccacaaaatgc 25400532  T
Q  249 agtcaggttacttagagagca 269  Q
    | ||||||| |||||||||||    
T  25400533 actcaggttgcttagagagca 25400553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 22533969 - 22533925
Alignment:
Q  231 aaaaaggccacgagatgcagtcaggttacttagagagcatgacga 275  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  22533969 aaaaaggtcacgagatgcactcaggttacttagagagcaggacga 22533925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 20146777 - 20146819
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    |||||||||||||||||||||||||| ||||||  ||||||||    
T  20146777 gctagttctgattattacaagcgagatcgaacttgaaatctca 20146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 21291341 - 21291299
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctca 191  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  21291341 gctagttctgattattacaatcgagatcgaactagaaatctca 21291299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 267
Target Start/End: Complemental strand, 20849 - 20703
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcga 219  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||| ||||| | |||||| |||| |||  ||| ||||||||| |||||    
T  20849 tgtttaccggtgttttcggcaaactacgggctagttcttattattccaagcgagatcgaacaagaaatcttaggacatgttgtgaaaaggttttgatcga 20750  T
Q  220 agatagtttgaaaaaaggccacgagatgcagtcaggttacttagagag 267  Q
    | |  ||||| ||||||| ||||| ||||| |||||||||||||||||    
T  20749 aaacggtttg-aaaaaggacacgaaatgcactcaggttacttagagag 20703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 20654 - 20571
Alignment:
Q  280 gattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||||||||||||| |||||||||| |||| || | |||||||||||||| | |||||||||||||||||||||||||    
T  20654 gattgcaagtaaaagcaagataaaattaaagaaaagggtgaaagtttaaacgcatatacttaaaggaaatgtaaaatgcattgc 20571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 1346 - 1431
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  1346 cattctgtataacttatttccctagacgccggtagtttgagtgttgtagaa-ttctataaatgatttgcgacctattttccggcttg 1431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 1225 - 1309
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||||||||| |||||||| | ||| ||||| ||||  |||| ||||||||| |||||| |||||||||| ||||||||||||||    
T  1225 agattgcaagcaaaagcaatataaagttaaatgaaaaggtaaaagtttaaacacataaacttaaaggaaaggtaaaatgcattgc 1309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 376739 - 376899
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||||||||||||||| || |||||| | ||||||||||||| |||||||||||||||||||| ||||||||| | |||  ||||||||||||  ||      
T  376739 ttgtttaccggtgtttttggcaaactatgggctagttctgatttttacaagcgagaccgaactagaaatctcagaacatgttgtgcaaaggtttcgataa 376838  T
Q  219 aagata--gtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
    || | |  ||||| ||||||||||||| |||||   ||||||||||||||| | ||||||||    
T  376839 aaaaaacggtttg-aaaaaggccacgaaatgcacctaggttacttagagagaaggacgagtt 376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 377083 - 377135
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  377083 cgccggtagtttgagtgttgtaaaatttctataaatgatttgcaacccatttt 377135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 357841 - 357789
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatt 420  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  357841 cattctgtataacttgtttccctagacgtcggtagtttgagtgttgtagaatt 357789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 370165 - 370102
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggtttt 213  Q
    |||||||||||||||||||||||||| ||||||| |||||||| | ||||  |||||||||||||    
T  370165 gctagttctgattattacaagcgagatcgaactagaaatctcaag-aatgttgtgcaaaggtttt 370102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 38087 - 38246
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcagga-aatgacgtgcaaaggtttt-aat 216  Q
    |||||| || ||| |||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||  |||  |||||||| |||| | |    
T  38087 ttgtttgcctgtgctttcggcaaactacgggctagttctgattattacaaacgagaccgaactagaaatctcaggagcatgttgtgcaaagattttgatt 38186  T
Q  217 cgaagata--gtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    |||| | |  |||| | |||  ||||||||||||| ||||||||||||||||||| ||||    
T  38187 cgaaaaaagggtttaataaagagccacgagatgcactcaggttacttagagagcaggacg 38246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 38352 - 38409
Alignment:
Q  388 cctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38352 cctagacgtcggtagtttgagtgttgtagaa-ttctataaatgatttgcgacccatttt 38409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 16982 - 17143
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctca-ggaaatgacgtgcaaaggttttaatcg 218  Q
    ||||| || |||||||||| |||||||| |||||||||||||||||||||| | | ||||||| | |||||| ||  |||  ||||||| ||||| || |    
T  16982 tgtttgcctgtgttttcggcaaactacgggctagttctgattattacaagcaaaatcgaactagagatctcatgggcatgttgtgcaaatgttttgattg 17081  T
Q  219 --aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacgagtt 278  Q
      || || ||||||||||  ||||||||||||| ||||||||||||||||| | ||||||||    
T  17082 aaaaaatggtttgaaaaagagccacgagatgcactcaggttacttagagagtaggacgagtt 17143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 17301 - 17386
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| ||||||||| |||| ||||||||||  ||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||    
T  17301 cattctgtataactcgtttccctagacgccaatagtttgagtgttgtagaa-ttctatatatgagttgtgacccattttccggcttg 17386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 18013 - 18157
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||||| || ||||||| ||||  || || |||  ||||||||||||| |  |    
T  18013 ttgtttaccggtgttttcggcaaactacaggctagttctgattattacaagcgggatcgaactagaaattccacgacatgttgtgcaaaggttttga-gg 18111  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagag 265  Q
    || | |||||| ||||| |||| || ||||| |||||||||||||||    
T  18112 aaaacagtttg-aaaaatgccatgaaatgcactcaggttacttagag 18157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 25905 - 26049
Alignment:
Q  119 ttgtttaccggtgttttcggaaaactacgagctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcg 218  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||||| || ||||||| ||||  || || |||  ||||||||||||| |  |    
T  25905 ttgtttaccggtgttttcggcaaactacaggctagttctgattattacaagcgggatcgaactagaaattccacgacatgttgtgcaaaggttttga-gg 26003  T
Q  219 aagatagtttgaaaaaaggccacgagatgcagtcaggttacttagag 265  Q
    || | |||||| ||||| |||| || ||||| |||||||||||||||    
T  26004 aaaacagtttg-aaaaatgccatgaaatgcactcaggttacttagag 26049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 18309 - 18381
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacc 440  Q
    |||| ||| ||||| |||| ||||  ||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  18309 cattctgtctaactcgtttccctatgcgccggtagtttgagtgatgtataatttctataaataatttgcgacc 18381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 26201 - 26273
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacc 440  Q
    |||| ||| ||||| |||| ||||  ||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  26201 cattctgtctaactcgtttccctatgcgccggtagtttgagtgatgtataatttctataaataatttgcgacc 26273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 18226 - 18272
Alignment:
Q  317 gtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||| ||||||||||| |||||||||| ||||||||||||||    
T  18226 gtaaaagttaaaacgcataaacttaaaggaaaggtaaaatgcattgc 18272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 26118 - 26164
Alignment:
Q  317 gtaatagtttaaacgcataaatttaaaggaaatgtaaaatgcattgc 363  Q
    |||| |||| ||||||||||| |||||||||| ||||||||||||||    
T  26118 gtaaaagttaaaacgcataaacttaaaggaaaggtaaaatgcattgc 26164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 446
Target Start/End: Original strand, 29338 - 29416
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    |||| ||||||||| |||||||||  || ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  29338 cattatgtataactcgttttcctatgcgtcggtagttttaatgttgtagaatttctataaatgatttgcgacccatttt 29416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 363
Target Start/End: Original strand, 29216 - 29301
Alignment:
Q  279 agattgcaagtaaaagcaagacaaaattaaaggaaagagtaatagtttaaacgcataaa-tttaaaggaaatgtaaaatgcattgc 363  Q
    ||||||||||| ||||||||| ||||||||||||||| |||| ||||||||| |||||| || |||| ||||||||||||||||||    
T  29216 agattgcaagtgaaagcaagataaaattaaaggaaagggtaaaagtttaaacacataaacttaaaagaaaatgtaaaatgcattgc 29301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 29087 - 29175
Alignment:
Q  184 aaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgcagtcaggttacttagagagcatgacg 274  Q
    ||||||||||| |||| || |||||||||| |||||| |  |||||||||  |||||| | ||||| ||||||||||||||||||| ||||    
T  29087 aaatctcaggacatgatgttcaaaggttttgatcgaaaacggtttgaaaa--ggccacaaaatgcactcaggttacttagagagcaagacg 29175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 29037 - 29086
Alignment:
Q  120 tgtttaccggtgttttcggaaaactacgagctagttctgattattacaag 169  Q
    ||||||||||||||||||| |||||||  | || ||||||||||||||||    
T  29037 tgtttaccggtgttttcggcaaactacaggttaattctgattattacaag 29086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 37218 - 37148
Alignment:
Q  377 taacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttc 448  Q
    ||||| |||| ||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  37218 taactcgtttccctagacgtaggtagtttgagtgttgtagaa-ttctataaatgattagcgacccatttttc 37148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 269
Target Start/End: Original strand, 31567 - 31686
Alignment:
Q  149 gctagttctgattattacaagcgagaccgaactaaaaatctcaggaaatgacgtgcaaaggttttaatcgaagatagtttgaaaaaaggccacgagatgc 248  Q
    ||||||| |||||||||||||||||| ||| ||| |||||||| ||   |  |||||||| |||||   ||| | |||||||||||||||||||| ||||    
T  31567 gctagttatgattattacaagcgagatcgagctagaaatctcaagacc-gttgtgcaaagcttttatcggaaaagagtttgaaaaaaggccacgaaatgc 31665  T
Q  249 agtcaggttacttagagagca 269  Q
    | ||||||| |||||||||||    
T  31666 actcaggtttcttagagagca 31686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 454
Target Start/End: Complemental strand, 14736 - 14678
Alignment:
Q  395 gccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||    
T  14736 gccggtagtttgagggttgtagaatt-ctataaatgatttgcgaccaattttccggcttg 14678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 8668 - 8746
Alignment:
Q  375 tataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    ||||||| |||| |||||||| ||||||||| |||||||||| | |||| || ||||||||||||||| ||| |||||||    
T  8668 tataactcgtttccctagacgtcggtagtttaagtgttgtag-agttctgtatatgatttgcgacccactttccggcttg 8746  T

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Target: scaffold0502 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 12305 - 12220
Alignment:
Q  368 cattttgtataacttgttttcctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttttcggcttg 454  Q
    |||| |||||||||  ||| |||||||| | ||||||| ||||||||||||||| | || ||||||||||||||| ||| |||||||    
T  12305 cattctgtataactcatttccctagacgtcagtagtttaagtgttgtagaattt-tgtatatgatttgcgacccaatttccggcttg 12220  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 26931 - 26875
Alignment:
Q  389 ctagacgccggtagtttgagtgttgtagaatttctataaatgatttgcgacccatttt 446  Q
    ||||||| ||||| || ||||| | |||||||||||||||||||||||||||||||||    
T  26931 ctagacgacggtacttcgagtgct-tagaatttctataaatgatttgcgacccatttt 26875  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 374190 - 374144
Alignment:
Q  394 cgccggtagtttgagtgttgtagaatttctataaatgatttgcgacc 440  Q
    |||| ||| |||||||||||||| |||||||||| ||||||||||||    
T  374190 cgcctgtactttgagtgttgtagcatttctataagtgatttgcgacc 374144  T

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